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The map label for this gene is desA3 [H]

Identifier: 78049608

GI number: 78049608

Start: 4652357

End: 4653478

Strand: Reverse

Name: desA3 [H]

Synonym: XCV4052

Alternate gene names: 78049608

Gene position: 4653478-4652357 (Counterclockwise)

Preceding gene: 78049609

Following gene: 78049605

Centisome position: 89.86

GC content: 64.62

Gene sequence:

>1122_bases
ATGAGCCGAGTCCATAACCGTGCCCTGTCCGCTGCCGAACTGCAGTCTTTCGGCGACGAACTCGATGCCATCCGCGCGCG
CGTGCTGAGCCAGGTGGGCGCCGCCGATGCGCGCTACATCCGCCGCATCGTGGCCGCCGTGCGCTGGACCGGCGTGGCCG
GTCGTGCGCTGCTGTTCCTGGGTGCGTTCGTGCACAGCGTGCTGGTTCCGGCATGGATCGCCGGCGTGCTGCTGCTGGCG
TTGTCCAAGATCCTGGAGAACATGGAGCTGGGCCATAACGTCATGCACGGCCAGTACGACTGGATGGGCGACCCGCAGCT
CAACGGCAACACCTACGAGTGGGACATCGTTGCCACCGGCGACAACTGGCGCAAGACGCACAACTTCAAGCACCACACCT
ACACCAACGTGCGCGGCATGGACGACGACATCGGCTACGGCCTGCTGCGCATCTTCCCCGAGCAGCGCTGGCGCCCGTTC
TACCTGCTGCAGCCCTTCATTGCGGTGGTGTTCGCGCTGCTGTTCGAATGGGGCGTGGCGATCCAGGACCTGCGCCTGGG
CCGTTGGTTCGCCGGCAAGATGAAGGCGGCCGAACTGCGTGCCTCGTTCCTGCCGGTCGGCCGCAAGATGGGCCGCCAGA
TGCTCAAGGACTACATCGTGTTTCCGCTGCTGGCCGGCCCGTTCTTCCTGACGGTGTTGCTGGGCAACCTGGCGGCCAAC
GTGCTGCGTAGCATCTGGACCTTCGTGATCATCTTCTGCGGCCACTTCACGGCCGATGCGGAAGTGTTTCCGAAGGAATC
CATCCGCAACGAATCGCGTGGCCACTGGTATCTGCGTCAGCTGCGTGGTTCGTCCAACCTGACCGGCGGCAAGCTGATGA
ACGTGCTGTCGGGTAACCTGAGCCACCAGATCGAGCATCACTTCTATCCGGACCTGCCGGCCAACCGCTATGCGCAGATC
GCTGTCGAAGTGAAGCAGGTCTGTGTGCGCTACGGCCAGCACTACAACACCGGCTCGCTGCCGCGCCAGTTCGGCCAGGT
GATGTGGCGAATCGTGCGCCATGCCTTCCCGAGCCGGCCCAAGCCGGTGCGGCAGAGCAGCGCTGCATTGCAGGGCGCGT
GA

Upstream 100 bases:

>100_bases
CCTGCTCACCGGTGAACGCAGTAACGAACCCACCGCACAGGTGCGCCTGTGCATTAGTGCGCCAAGCACTGACCTGATCC
TGGATCTGTAAGGAATCTTC

Downstream 100 bases:

>100_bases
TCGGATTGCGCAACGCATGATCGACATCGAAAGGCCGCCAATGGCGGCCTTTTTGTTGCCGGGTTCATTGTGTCGCGCTG
CGTGCCTGTGCGTAGTAGGC

Product: putative linoleoyl-CoA desaturase

Products: NA

Alternate protein names: Delta(9)-desaturase; Stearoyl-CoA desaturase [H]

Number of amino acids: Translated: 373; Mature: 372

Protein sequence:

>373_residues
MSRVHNRALSAAELQSFGDELDAIRARVLSQVGAADARYIRRIVAAVRWTGVAGRALLFLGAFVHSVLVPAWIAGVLLLA
LSKILENMELGHNVMHGQYDWMGDPQLNGNTYEWDIVATGDNWRKTHNFKHHTYTNVRGMDDDIGYGLLRIFPEQRWRPF
YLLQPFIAVVFALLFEWGVAIQDLRLGRWFAGKMKAAELRASFLPVGRKMGRQMLKDYIVFPLLAGPFFLTVLLGNLAAN
VLRSIWTFVIIFCGHFTADAEVFPKESIRNESRGHWYLRQLRGSSNLTGGKLMNVLSGNLSHQIEHHFYPDLPANRYAQI
AVEVKQVCVRYGQHYNTGSLPRQFGQVMWRIVRHAFPSRPKPVRQSSAALQGA

Sequences:

>Translated_373_residues
MSRVHNRALSAAELQSFGDELDAIRARVLSQVGAADARYIRRIVAAVRWTGVAGRALLFLGAFVHSVLVPAWIAGVLLLA
LSKILENMELGHNVMHGQYDWMGDPQLNGNTYEWDIVATGDNWRKTHNFKHHTYTNVRGMDDDIGYGLLRIFPEQRWRPF
YLLQPFIAVVFALLFEWGVAIQDLRLGRWFAGKMKAAELRASFLPVGRKMGRQMLKDYIVFPLLAGPFFLTVLLGNLAAN
VLRSIWTFVIIFCGHFTADAEVFPKESIRNESRGHWYLRQLRGSSNLTGGKLMNVLSGNLSHQIEHHFYPDLPANRYAQI
AVEVKQVCVRYGQHYNTGSLPRQFGQVMWRIVRHAFPSRPKPVRQSSAALQGA
>Mature_372_residues
SRVHNRALSAAELQSFGDELDAIRARVLSQVGAADARYIRRIVAAVRWTGVAGRALLFLGAFVHSVLVPAWIAGVLLLAL
SKILENMELGHNVMHGQYDWMGDPQLNGNTYEWDIVATGDNWRKTHNFKHHTYTNVRGMDDDIGYGLLRIFPEQRWRPFY
LLQPFIAVVFALLFEWGVAIQDLRLGRWFAGKMKAAELRASFLPVGRKMGRQMLKDYIVFPLLAGPFFLTVLLGNLAANV
LRSIWTFVIIFCGHFTADAEVFPKESIRNESRGHWYLRQLRGSSNLTGGKLMNVLSGNLSHQIEHHFYPDLPANRYAQIA
VEVKQVCVRYGQHYNTGSLPRQFGQVMWRIVRHAFPSRPKPVRQSSAALQGA

Specific function: Desaturates stearoyl-CoA to form oleoyl-CoA [H]

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable). Note=Has been shown to be membrane-associated but no reliable trans-membrane regions are predicted by bioinformatics tools [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fatty acid desaturase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: NA

Molecular weight: Translated: 42327; Mature: 42195

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRVHNRALSAAELQSFGDELDAIRARVLSQVGAADARYIRRIVAAVRWTGVAGRALLFL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHH
GAFVHSVLVPAWIAGVLLLALSKILENMELGHNVMHGQYDWMGDPQLNGNTYEWDIVATG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCEEEEEEEECC
DNWRKTHNFKHHTYTNVRGMDDDIGYGLLRIFPEQRWRPFYLLQPFIAVVFALLFEWGVA
CCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHCHH
IQDLRLGRWFAGKMKAAELRASFLPVGRKMGRQMLKDYIVFPLLAGPFFLTVLLGNLAAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRSIWTFVIIFCGHFTADAEVFPKESIRNESRGHWYLRQLRGSSNLTGGKLMNVLSGNL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCH
SHQIEHHFYPDLPANRYAQIAVEVKQVCVRYGQHYNTGSLPRQFGQVMWRIVRHAFPSRP
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
KPVRQSSAALQGA
CCHHHHHHHCCCC
>Mature Secondary Structure 
SRVHNRALSAAELQSFGDELDAIRARVLSQVGAADARYIRRIVAAVRWTGVAGRALLFL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHH
GAFVHSVLVPAWIAGVLLLALSKILENMELGHNVMHGQYDWMGDPQLNGNTYEWDIVATG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCEEEEEEEECC
DNWRKTHNFKHHTYTNVRGMDDDIGYGLLRIFPEQRWRPFYLLQPFIAVVFALLFEWGVA
CCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHCHH
IQDLRLGRWFAGKMKAAELRASFLPVGRKMGRQMLKDYIVFPLLAGPFFLTVLLGNLAAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRSIWTFVIIFCGHFTADAEVFPKESIRNESRGHWYLRQLRGSSNLTGGKLMNVLSGNL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCH
SHQIEHHFYPDLPANRYAQIAVEVKQVCVRYGQHYNTGSLPRQFGQVMWRIVRHAFPSRP
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
KPVRQSSAALQGA
CCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]