| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is nagJ [H]
Identifier: 78049599
GI number: 78049599
Start: 4644296
End: 4646281
Strand: Reverse
Name: nagJ [H]
Synonym: XCV4043
Alternate gene names: 78049599
Gene position: 4646281-4644296 (Counterclockwise)
Preceding gene: 78049600
Following gene: 78049597
Centisome position: 89.72
GC content: 66.87
Gene sequence:
>1986_bases ATGAAGCCACGCAACAGTACGCCGGGCGTGCGCCTGCTTTCGGTATTGGTGGCGTTGGGCCTGGCTGCTCCGGCGTTGGC ACAGGCCGTGACCGAACCGGTCACCCAGCCGGCGATCTATCCGACGCCGGTCTCGATCACGCTGGATGGCGCAACCGTGA CCTTGGGCCGCTCGGTGGTGCTGGTGGTCGCCCCTGGCGCGGACAAGGCCACGGTGGCGCTGGTGCGCCGCATTCTCGAC AGCGCCGGCGTCACCAAGATTGCGACCGCCACACGCCTGCCTGCCGCGCTGGACCGCCCGCACATCGTGCTCGGCACCGG CGATGCGGCAGTGGTGCGCGATGCGCTGACGCGCAGCAAGGCGACCCAGGACACCCATAAGGAAGGCTACACGTTGGCCA GCGTCGCGCTCGATCGCGGCAGCCTGATCACGCTGGCCGGCCACGACGACGATGGCCTGTTCCATGCGGCGCAGACGCTG CGGCAGCTGGTCGAGCGGCCGGCCATCCCGACGTTGACGATCCAGGATTACCCGGCCATGCCGATCCGCGGCACCATCGA AGGCTTCTACGGCGCGCCGTGGTCGATGAGCGATCGCAGCAAGCACATCGATTTCCTCGCCCGCACCAAGGCCAACACCT TCATCTATAGCCCCAAGGACGACCCTTACGCGCGCGATCGCTGGCGCGAGCCGTACCCGAGGGCGACCTTGAAGGCGCTT GGCCAGCTGGCCGCTACCGCCAAGCGCAATCACGTCGATTTCGTCTATGCGATTTCGCCTGGCCCCACCGTGTGCTTCTC CGATCCGGCCGATGCCAAGGCCTTGTTGCGCAAGTTCGATGCGTTCCGTGCGCTGGGCGTGCGCAGCTTCTACGTGGCGC TGGACGATATCGAATACACCAAGTGGAATTGCGAACGCGACAAGACCACCTTTGGCGAGTCCGGCGCGCAGGCGGCCGGT ATCGCGCAGTCGCATCTGCTCAATCTGGTGCAGGCCGATCTGGTCGCGCGCCACGATGCGGCCGCTGAACTCATCATGGT GCCGACCGAGTACTACGACGCCAAAGAGAGCCCGTACAAGGAAGCCTTGCGCAAGCATCTTGACCCGAAGATCGTGGTGC AGTGGACCGGCACCGATGTGGTGCCGCCGGCTATTTCCATTCCCGATGCGCGCGCGGCCACCAAGGCGTTCGGTCGCAAG ACGCTGTTGTGGGACAACTACCCGGTCAACGATTTCGAAACGTCGGCCGGGCGCCTGCTGATGGCGCCGTATGCGCGGCG CGAGGCGGGTCTGTCGGCCGAGTTGTCGGGCATCGTCTCCAACCCGATGAACCAGGAAGCGCCCAGCCGCGTCGCGGTGA TGGGTGTGACCGCGTTCGCCTGGAACGACAAAGACTACGACGCGCAACGCACCTGGCATGCGGCGGCGCGCGATCTGGCC GGCGGCGATGCGCGCGTGGCTGCGGCCTTGCTGACCTTCTTCGACACCCAGCATCTGGCGCCAACCTTTGGCAGCCAGCC GTGGCAGGAACAGGCTCCACGCTTGAAGGCCGTGCTCGATCATGTGCGCGAGGCAATCGCGCTTGGCGATGCGGCAACGC GCACGGAGGCGATTGCCGAACTGGCACGCGCTGCCGACGAACTGGCTGCGGCACCGCAGATCATCCGCGACGGCGTCGCC GACAAGGGCTTTGCCGAGCAATCGCGTCCCTGGCTGGAGGCAATGGAGGATTGGGGCCAGGCCCTGCAGAAGACGGCAGC CGGGCTGGATGCGGCAAATCGCGGCCACACGCAGGCGCCGGCCTTGTTTGCCGAGGCGGCTGCGATCGCCGCCGTCGCAA GCCAGATCCCAACGATTCCCGGCGCCACGCGCTTCGGCGGCCCGGTCAAGCTCGCTGACGGCGTGCTCGACCGCTTCATC GCGCAAGCGCCGCGCTTGATCGCCTATCGCGTGCCGGCGGTTGCCGACTCGGCAGCAGCAAAGTGA
Upstream 100 bases:
>100_bases AGCCTAGCGCTGGCCAGAATGGAAATCCCGGCCGCGCTTGTCGCCGCCGCCCGACTTGCCTACTCTAGGGCGTAGTACCA TTCCAATACCGGAGTTCGAG
Downstream 100 bases:
>100_bases TGGGGGAGTGCAATAACACAGCGACGCGCATCGGGAATTGCTCGCGTCGCTGTGCCTGCAAATGCGGGAGCGCCATTGCC ACTGCATCGCAGCACCCGGC
Product: putative secreted protein
Products: NA
Alternate protein names: Beta-N-acetylhexosaminidase; Beta-hexosaminidase; GH84; Hexosaminidase B; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 661; Mature: 661
Protein sequence:
>661_residues MKPRNSTPGVRLLSVLVALGLAAPALAQAVTEPVTQPAIYPTPVSITLDGATVTLGRSVVLVVAPGADKATVALVRRILD SAGVTKIATATRLPAALDRPHIVLGTGDAAVVRDALTRSKATQDTHKEGYTLASVALDRGSLITLAGHDDDGLFHAAQTL RQLVERPAIPTLTIQDYPAMPIRGTIEGFYGAPWSMSDRSKHIDFLARTKANTFIYSPKDDPYARDRWREPYPRATLKAL GQLAATAKRNHVDFVYAISPGPTVCFSDPADAKALLRKFDAFRALGVRSFYVALDDIEYTKWNCERDKTTFGESGAQAAG IAQSHLLNLVQADLVARHDAAAELIMVPTEYYDAKESPYKEALRKHLDPKIVVQWTGTDVVPPAISIPDARAATKAFGRK TLLWDNYPVNDFETSAGRLLMAPYARREAGLSAELSGIVSNPMNQEAPSRVAVMGVTAFAWNDKDYDAQRTWHAAARDLA GGDARVAAALLTFFDTQHLAPTFGSQPWQEQAPRLKAVLDHVREAIALGDAATRTEAIAELARAADELAAAPQIIRDGVA DKGFAEQSRPWLEAMEDWGQALQKTAAGLDAANRGHTQAPALFAEAAAIAAVASQIPTIPGATRFGGPVKLADGVLDRFI AQAPRLIAYRVPAVADSAAAK
Sequences:
>Translated_661_residues MKPRNSTPGVRLLSVLVALGLAAPALAQAVTEPVTQPAIYPTPVSITLDGATVTLGRSVVLVVAPGADKATVALVRRILD SAGVTKIATATRLPAALDRPHIVLGTGDAAVVRDALTRSKATQDTHKEGYTLASVALDRGSLITLAGHDDDGLFHAAQTL RQLVERPAIPTLTIQDYPAMPIRGTIEGFYGAPWSMSDRSKHIDFLARTKANTFIYSPKDDPYARDRWREPYPRATLKAL GQLAATAKRNHVDFVYAISPGPTVCFSDPADAKALLRKFDAFRALGVRSFYVALDDIEYTKWNCERDKTTFGESGAQAAG IAQSHLLNLVQADLVARHDAAAELIMVPTEYYDAKESPYKEALRKHLDPKIVVQWTGTDVVPPAISIPDARAATKAFGRK TLLWDNYPVNDFETSAGRLLMAPYARREAGLSAELSGIVSNPMNQEAPSRVAVMGVTAFAWNDKDYDAQRTWHAAARDLA GGDARVAAALLTFFDTQHLAPTFGSQPWQEQAPRLKAVLDHVREAIALGDAATRTEAIAELARAADELAAAPQIIRDGVA DKGFAEQSRPWLEAMEDWGQALQKTAAGLDAANRGHTQAPALFAEAAAIAAVASQIPTIPGATRFGGPVKLADGVLDRFI AQAPRLIAYRVPAVADSAAAK >Mature_661_residues MKPRNSTPGVRLLSVLVALGLAAPALAQAVTEPVTQPAIYPTPVSITLDGATVTLGRSVVLVVAPGADKATVALVRRILD SAGVTKIATATRLPAALDRPHIVLGTGDAAVVRDALTRSKATQDTHKEGYTLASVALDRGSLITLAGHDDDGLFHAAQTL RQLVERPAIPTLTIQDYPAMPIRGTIEGFYGAPWSMSDRSKHIDFLARTKANTFIYSPKDDPYARDRWREPYPRATLKAL GQLAATAKRNHVDFVYAISPGPTVCFSDPADAKALLRKFDAFRALGVRSFYVALDDIEYTKWNCERDKTTFGESGAQAAG IAQSHLLNLVQADLVARHDAAAELIMVPTEYYDAKESPYKEALRKHLDPKIVVQWTGTDVVPPAISIPDARAATKAFGRK TLLWDNYPVNDFETSAGRLLMAPYARREAGLSAELSGIVSNPMNQEAPSRVAVMGVTAFAWNDKDYDAQRTWHAAARDLA GGDARVAAALLTFFDTQHLAPTFGSQPWQEQAPRLKAVLDHVREAIALGDAATRTEAIAELARAADELAAAPQIIRDGVA DKGFAEQSRPWLEAMEDWGQALQKTAAGLDAANRGHTQAPALFAEAAAIAAVASQIPTIPGATRFGGPVKLADGVLDRFI AQAPRLIAYRVPAVADSAAAK
Specific function: Biological function unknown. Capable of hydrolyzing the glycosidic link of O-GlcNAcylated proteins [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
Organism=Homo sapiens, GI215490056, Length=312, Percent_Identity=31.0897435897436, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI11024698, Length=276, Percent_Identity=32.9710144927536, Blast_Score=155, Evalue=8e-38, Organism=Caenorhabditis elegans, GI193211002, Length=313, Percent_Identity=28.1150159744409, Blast_Score=142, Evalue=8e-34, Organism=Caenorhabditis elegans, GI193211004, Length=316, Percent_Identity=28.7974683544304, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI24648670, Length=297, Percent_Identity=29.2929292929293, Blast_Score=130, Evalue=2e-30,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR011496 - InterPro: IPR008965 - InterPro: IPR000421 - InterPro: IPR018452 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR008979 - InterPro: IPR017853 - InterPro: IPR013783 [H]
Pfam domain/function: PF00754 F5_F8_type_C; PF00041 fn3; PF02838 Glyco_hydro_20b; PF07555 NAGidase [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 70845; Mature: 70845
Theoretical pI: Translated: 7.47; Mature: 7.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPRNSTPGVRLLSVLVALGLAAPALAQAVTEPVTQPAIYPTPVSITLDGATVTLGRSVV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCEEE LVVAPGADKATVALVRRILDSAGVTKIATATRLPAALDRPHIVLGTGDAAVVRDALTRSK EEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCEEEEECCCHHHHHHHHHHHH ATQDTHKEGYTLASVALDRGSLITLAGHDDDGLFHAAQTLRQLVERPAIPTLTIQDYPAM CCCHHHHCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC PIRGTIEGFYGAPWSMSDRSKHIDFLARTKANTFIYSPKDDPYARDRWREPYPRATLKAL CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCCCHHHHHHH GQLAATAKRNHVDFVYAISPGPTVCFSDPADAKALLRKFDAFRALGVRSFYVALDDIEYT HHHHHHHHCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHCHHEEEEEEECCEEC KWNCERDKTTFGESGAQAAGIAQSHLLNLVQADLVARHDAAAELIMVPTEYYDAKESPYK CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCHHH EALRKHLDPKIVVQWTGTDVVPPAISIPDARAATKAFGRKTLLWDNYPVNDFETSAGRLL HHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCCEE MAPYARREAGLSAELSGIVSNPMNQEAPSRVAVMGVTAFAWNDKDYDAQRTWHAAARDLA ECCHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCC GGDARVAAALLTFFDTQHLAPTFGSQPWQEQAPRLKAVLDHVREAIALGDAATRTEAIAE CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LARAADELAAAPQIIRDGVADKGFAEQSRPWLEAMEDWGQALQKTAAGLDAANRGHTQAP HHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH ALFAEAAAIAAVASQIPTIPGATRFGGPVKLADGVLDRFIAQAPRLIAYRVPAVADSAAA HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC K C >Mature Secondary Structure MKPRNSTPGVRLLSVLVALGLAAPALAQAVTEPVTQPAIYPTPVSITLDGATVTLGRSVV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEECCEEE LVVAPGADKATVALVRRILDSAGVTKIATATRLPAALDRPHIVLGTGDAAVVRDALTRSK EEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHCCCCEEEEECCCHHHHHHHHHHHH ATQDTHKEGYTLASVALDRGSLITLAGHDDDGLFHAAQTLRQLVERPAIPTLTIQDYPAM CCCHHHHCCCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC PIRGTIEGFYGAPWSMSDRSKHIDFLARTKANTFIYSPKDDPYARDRWREPYPRATLKAL CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHCCCCCCHHHHHHH GQLAATAKRNHVDFVYAISPGPTVCFSDPADAKALLRKFDAFRALGVRSFYVALDDIEYT HHHHHHHHCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHCHHEEEEEEECCEEC KWNCERDKTTFGESGAQAAGIAQSHLLNLVQADLVARHDAAAELIMVPTEYYDAKESPYK CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHCCCCCCHHH EALRKHLDPKIVVQWTGTDVVPPAISIPDARAATKAFGRKTLLWDNYPVNDFETSAGRLL HHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCCCEE MAPYARREAGLSAELSGIVSNPMNQEAPSRVAVMGVTAFAWNDKDYDAQRTWHAAARDLA ECCHHHHHCCCCHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCC GGDARVAAALLTFFDTQHLAPTFGSQPWQEQAPRLKAVLDHVREAIALGDAATRTEAIAE CCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH LARAADELAAAPQIIRDGVADKGFAEQSRPWLEAMEDWGQALQKTAAGLDAANRGHTQAP HHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH ALFAEAAAIAAVASQIPTIPGATRFGGPVKLADGVLDRFIAQAPRLIAYRVPAVADSAAA HHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC K C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA