Click here to switch to the map view.

The map label for this gene is yhjC [H]

Identifier: 78049452

GI number: 78049452

Start: 4480553

End: 4481476

Strand: Reverse

Name: yhjC [H]

Synonym: XCV3896

Alternate gene names: 78049452

Gene position: 4481476-4480553 (Counterclockwise)

Preceding gene: 78049457

Following gene: 78049451

Centisome position: 86.54

GC content: 63.85

Gene sequence:

>924_bases
ATGGATCACCTGCAGGCAATCCGTGCCTTTGCGCGCGTTGTGGAAACCGGTGGGTTCAACCGTGCGGCGGAATCGCTGCA
GATGCCCAATGCCACGCTGAGCAAGTCGATCAGCGCGCTGGAAAAACATCTGGGAGTCAAATTGCTTGAACGCAGCACGC
GCCGCGTGCGTGTCAGCAACGACGGCGCTGCGTATTACGCGCGCGTGCGGCACCTGCTCACGGAGCTGGACGACGTGGAA
GCCACGTTGGGGCGTGCCCAGGGCAGCCCCAAGGGCCGGCTTCGTGTAGATACGGGCGGCTCGACGGCGTGCGGATTGTT
GATACCCGCATTGCCGGAGTTCTGTGCGCGCTATCCGGATATCCAGCTGCAGCTCGGCGTCACCGATCGCACGGTGGATG
TCATCGGCGAAAACATCGACTGCGCGATCCGCAGCACGGCGGACGACGGCGCGCTGATATCGCGCAAGATCGGCAGCCTT
GCCTGGACCACCTGCGCGAGTCCTGACTATCTCGTACGCTACGGTGTCCCGACCCACCCGGAACAGCTGAAAAGCCTGGC
GTTTCCCGTGGTGGGCTACTTCTCCGCGCATAGCGGCAAAGCGCCGCCGCTGCATTTCCTGGACGATGGCGCGCCGCTGG
AGATCGTTCCCAACTGCAGCGTGATGGTCAACGAGAGCAACGCGCATCTGGCGACCGGATTGGCCGGGCTCGGGCTGATC
CACACGCTCGATTTCATGGTGCGGCCGGCCATCGAACGCGGCGCGCTGGTGCCGGTCCTGCAGGACTGGCGCCCGGCGCC
ATTGGATGTCTTCATCGCCTATGCGCCCAGCCGACAGTTGAGCACCAAGGTGCGTGTGTTTATCGAGTGGGTGAGCGAAA
TCTATGCCCGGATCGGGCGGACACATTCGGTGGTCGAGCGCTGA

Upstream 100 bases:

>100_bases
TTGCAGGCAGTCTATTAACCTCGCTGCGGCGATAAATCGGCTTATCGTTGATTCTTTATTTCCCTGAGGGAATAATCCGG
CGCTCTAGACGGAGCGATCA

Downstream 100 bases:

>100_bases
CGAACGCAACCTGTGGCGTTCACGCGATGTGCGGCGTTTGCTTCCGGGCGTTGTGGCATCGCATCGGCCCGGGGCCGGTT
CGCTTTTGCGCCGTGCTCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MDHLQAIRAFARVVETGGFNRAAESLQMPNATLSKSISALEKHLGVKLLERSTRRVRVSNDGAAYYARVRHLLTELDDVE
ATLGRAQGSPKGRLRVDTGGSTACGLLIPALPEFCARYPDIQLQLGVTDRTVDVIGENIDCAIRSTADDGALISRKIGSL
AWTTCASPDYLVRYGVPTHPEQLKSLAFPVVGYFSAHSGKAPPLHFLDDGAPLEIVPNCSVMVNESNAHLATGLAGLGLI
HTLDFMVRPAIERGALVPVLQDWRPAPLDVFIAYAPSRQLSTKVRVFIEWVSEIYARIGRTHSVVER

Sequences:

>Translated_307_residues
MDHLQAIRAFARVVETGGFNRAAESLQMPNATLSKSISALEKHLGVKLLERSTRRVRVSNDGAAYYARVRHLLTELDDVE
ATLGRAQGSPKGRLRVDTGGSTACGLLIPALPEFCARYPDIQLQLGVTDRTVDVIGENIDCAIRSTADDGALISRKIGSL
AWTTCASPDYLVRYGVPTHPEQLKSLAFPVVGYFSAHSGKAPPLHFLDDGAPLEIVPNCSVMVNESNAHLATGLAGLGLI
HTLDFMVRPAIERGALVPVLQDWRPAPLDVFIAYAPSRQLSTKVRVFIEWVSEIYARIGRTHSVVER
>Mature_307_residues
MDHLQAIRAFARVVETGGFNRAAESLQMPNATLSKSISALEKHLGVKLLERSTRRVRVSNDGAAYYARVRHLLTELDDVE
ATLGRAQGSPKGRLRVDTGGSTACGLLIPALPEFCARYPDIQLQLGVTDRTVDVIGENIDCAIRSTADDGALISRKIGSL
AWTTCASPDYLVRYGVPTHPEQLKSLAFPVVGYFSAHSGKAPPLHFLDDGAPLEIVPNCSVMVNESNAHLATGLAGLGLI
HTLDFMVRPAIERGALVPVLQDWRPAPLDVFIAYAPSRQLSTKVRVFIEWVSEIYARIGRTHSVVER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=35.6902356902357, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1786401, Length=286, Percent_Identity=32.5174825174825, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1789639, Length=301, Percent_Identity=29.5681063122924, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=29.757785467128, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=29.8013245033113, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=27.5618374558304, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=25, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789173, Length=140, Percent_Identity=33.5714285714286, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI157672245, Length=119, Percent_Identity=33.6134453781513, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787879, Length=152, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787601, Length=134, Percent_Identity=26.865671641791, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788748, Length=136, Percent_Identity=32.3529411764706, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33417; Mature: 33417

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHLQAIRAFARVVETGGFNRAAESLQMPNATLSKSISALEKHLGVKLLERSTRRVRVSN
CCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
DGAAYYARVRHLLTELDDVEATLGRAQGSPKGRLRVDTGGSTACGLLIPALPEFCARYPD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
IQLQLGVTDRTVDVIGENIDCAIRSTADDGALISRKIGSLAWTTCASPDYLVRYGVPTHP
EEEEECCCCCCHHHHCCCCCEEEECCCCCCHHHHHHHCCHHEEECCCCCCEEECCCCCCH
EQLKSLAFPVVGYFSAHSGKAPPLHFLDDGAPLEIVPNCSVMVNESNAHLATGLAGLGLI
HHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEECCCEEEEECCCCHHHHHHHHHHHH
HTLDFMVRPAIERGALVPVLQDWRPAPLDVFIAYAPSRQLSTKVRVFIEWVSEIYARIGR
HHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
THSVVER
HHHHHCC
>Mature Secondary Structure
MDHLQAIRAFARVVETGGFNRAAESLQMPNATLSKSISALEKHLGVKLLERSTRRVRVSN
CCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
DGAAYYARVRHLLTELDDVEATLGRAQGSPKGRLRVDTGGSTACGLLIPALPEFCARYPD
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
IQLQLGVTDRTVDVIGENIDCAIRSTADDGALISRKIGSLAWTTCASPDYLVRYGVPTHP
EEEEECCCCCCHHHHCCCCCEEEECCCCCCHHHHHHHCCHHEEECCCCCCEEECCCCCCH
EQLKSLAFPVVGYFSAHSGKAPPLHFLDDGAPLEIVPNCSVMVNESNAHLATGLAGLGLI
HHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCEEEECCCEEEEECCCCHHHHHHHHHHHH
HTLDFMVRPAIERGALVPVLQDWRPAPLDVFIAYAPSRQLSTKVRVFIEWVSEIYARIGR
HHHHHHHHHHHHCCCCCHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
THSVVER
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]