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The map label for this gene is nodB [H]

Identifier: 78049181

GI number: 78049181

Start: 4171126

End: 4171917

Strand: Reverse

Name: nodB [H]

Synonym: XCV3625

Alternate gene names: 78049181

Gene position: 4171917-4171126 (Counterclockwise)

Preceding gene: 78049184

Following gene: 78049177

Centisome position: 80.56

GC content: 70.83

Gene sequence:

>792_bases
ATGGCATCATTGGGCATGACCACGCCGGAAACGCTGTATCGCACCCCTTCGCGCCCCTACCGCTGGGTGGGCCTATTGGC
CCTCTCGCAGGCAGCGGTGGCACTGCTGTGGTGGCATCTGGGCTGGGCCTGGGGGCTGCCTGCGCTGCTGCTGTCGCACG
CGCTGTTCGTGGTGCCGGTGTTCCTGCCGCGCGCGCGGCTGTATGCGCCGGTGCTGGCGCGGCTACCCGGTCGCGCGCCG
CATGTCTGGTTGACCATCGACGATGGCCCGTCCGACGACACCCCAGCCATCCTCGACCTGCTGGATGCTTACGACGCCAA
GGCAACGTTCTTCCTGGTCGGCGCGCGTGCCGAGCAGCGGCCCGAGCTGGTGCGCGACATGGTGCGGCGCGGGCATGGCA
TCGGCAACCACAGCCACACCCATCCGCAAGCCTGGTTCTGGGCGCTGGGGCCGCGCCGGATGGCGCAGGAAATCGGCCAG
GCGCAGCGCGTGCTGGCGTGCATTACCGGCCAGGCGCCACGGCTGTACCGCTCGGTGGTCGGCATGACCAACCCTTTCGT
CGCCTCGCCGCTGCGCGCGCACGGGCTGACCCGGGTGGCCTGGAGCGCGCGCGGCTTCGACGGCGTGCAATGCGAGCCGG
ACACCACCATCGCCCGCATCGTGCGCGACCTGCAACCCGGCGCCATCGTGCTGCTGCATGAAGGCGCTGCGCACGGCCAC
AACCTCACCATCCTGCGCGGCGTGCTGGAGGCGATGCAGGCGCGCGGGTTGGTGGGGCGGCGGCCGGATTAA

Upstream 100 bases:

>100_bases
GGCTGGATTGCAGCAGCGTATCGATACGGGAACGCAGGGCGGGATCGAGAGACATGGCAGCACTTGGGTGGCAGCGTGGA
GACCGGGCATTCTACGCCGC

Downstream 100 bases:

>100_bases
GCGCGACGGACAAAACAATTGCAGTCGCCGCCTGGCGGGCGCTGCCGGTGTTGGCGCGGCATGCGCCGCCCAGACATGAC
AGTTCCTTCCCCGCTTCGAC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 263; Mature: 262

Protein sequence:

>263_residues
MASLGMTTPETLYRTPSRPYRWVGLLALSQAAVALLWWHLGWAWGLPALLLSHALFVVPVFLPRARLYAPVLARLPGRAP
HVWLTIDDGPSDDTPAILDLLDAYDAKATFFLVGARAEQRPELVRDMVRRGHGIGNHSHTHPQAWFWALGPRRMAQEIGQ
AQRVLACITGQAPRLYRSVVGMTNPFVASPLRAHGLTRVAWSARGFDGVQCEPDTTIARIVRDLQPGAIVLLHEGAAHGH
NLTILRGVLEAMQARGLVGRRPD

Sequences:

>Translated_263_residues
MASLGMTTPETLYRTPSRPYRWVGLLALSQAAVALLWWHLGWAWGLPALLLSHALFVVPVFLPRARLYAPVLARLPGRAP
HVWLTIDDGPSDDTPAILDLLDAYDAKATFFLVGARAEQRPELVRDMVRRGHGIGNHSHTHPQAWFWALGPRRMAQEIGQ
AQRVLACITGQAPRLYRSVVGMTNPFVASPLRAHGLTRVAWSARGFDGVQCEPDTTIARIVRDLQPGAIVLLHEGAAHGH
NLTILRGVLEAMQARGLVGRRPD
>Mature_262_residues
ASLGMTTPETLYRTPSRPYRWVGLLALSQAAVALLWWHLGWAWGLPALLLSHALFVVPVFLPRARLYAPVLARLPGRAPH
VWLTIDDGPSDDTPAILDLLDAYDAKATFFLVGARAEQRPELVRDMVRRGHGIGNHSHTHPQAWFWALGPRRMAQEIGQA
QRVLACITGQAPRLYRSVVGMTNPFVASPLRAHGLTRVAWSARGFDGVQCEPDTTIARIVRDLQPGAIVLLHEGAAHGHN
LTILRGVLEAMQARGLVGRRPD

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28972; Mature: 28841

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLGMTTPETLYRTPSRPYRWVGLLALSQAAVALLWWHLGWAWGLPALLLSHALFVVPV
CCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLPRARLYAPVLARLPGRAPHVWLTIDDGPSDDTPAILDLLDAYDAKATFFLVGARAEQR
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCC
PELVRDMVRRGHGIGNHSHTHPQAWFWALGPRRMAQEIGQAQRVLACITGQAPRLYRSVV
HHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GMTNPFVASPLRAHGLTRVAWSARGFDGVQCEPDTTIARIVRDLQPGAIVLLHEGAAHGH
CCCCCHHHCCHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC
NLTILRGVLEAMQARGLVGRRPD
CHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ASLGMTTPETLYRTPSRPYRWVGLLALSQAAVALLWWHLGWAWGLPALLLSHALFVVPV
CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLPRARLYAPVLARLPGRAPHVWLTIDDGPSDDTPAILDLLDAYDAKATFFLVGARAEQR
HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCC
PELVRDMVRRGHGIGNHSHTHPQAWFWALGPRRMAQEIGQAQRVLACITGQAPRLYRSVV
HHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
GMTNPFVASPLRAHGLTRVAWSARGFDGVQCEPDTTIARIVRDLQPGAIVLLHEGAAHGH
CCCCCHHHCCHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC
NLTILRGVLEAMQARGLVGRRPD
CHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]