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The map label for this gene is yncD [C]

Identifier: 78049098

GI number: 78049098

Start: 4056753

End: 4059047

Strand: Reverse

Name: yncD [C]

Synonym: XCV3542

Alternate gene names: 78049098

Gene position: 4059047-4056753 (Counterclockwise)

Preceding gene: 78049100

Following gene: 78049097

Centisome position: 78.38

GC content: 62.96

Gene sequence:

>2295_bases
ATGCCAAAGTGCTCGAACACCGATCGATTGGCGGCCTCGGTCGCCGACATCCTCGCCACCACCCGCCCGCGCCGCGCGCT
GGCATCAATGACCTTGCTGCTGGCCGGCGCGCAGAGCTTGCCTGCGCTGGCGCAAGACGCACGCACGCTGGATGCGGTCA
GCGTGGTGGGCACCGGCTCCACGCGCACCACCGCGTCCATCTCGGCGGACGAGATCCAGGCGCAGGTGCCAGGGGTGGCG
CCGCAGCAGCTGTTGGCCAGCCTGCCCGGCGTGAACGTGCAGACCTCCGACCCGTTCGGGCTGTATGAATTCGGTGATTC
GATGACCATCCGCGGGTTTTCCGCCAACCAGATCGGCGTGACCTTGGACGGCATTCCGATCGAAACCTTCGACACCCGCG
AAGGCGGGCCGATTACGCGCTACGTCTCCAGCGAAAACCTGCTCGATGTGACGGTGTCCGCCGGTTCGGGCGATGTCACC
CAGCCTTCCTACCATGCACTGGGCGGTGCGATCCGCTACACCAGCCTGCCACCGAAGGGCGGCGACAGCTGGAGCGGCAA
TCTCACCCAGACGATTGGTTCGGACGATCTGGTGCGCAGCTTCGTGCGCCTGGATACGCCGAATTGGTGGGAAGGCGGCC
CCAGCGCGTATCTGTCCGCCTCGCGCACGCAAGGCGGGGTGTGGGACATGGAGCCGGCCACGCAGAAGAGCGATCACTTC
GAAGCCAACATTCGCCAGGCCTGGGACGCTGGCAGCCTGACGCTGGGATGGATCTACAACAACCGCAAGGACTACGACGT
GCAGTCGTACAACTCCGACGGTTCGGTGGCGTGGGATCTGCATGAGCGCATCACCGGCAACCCGGAAGTGGATGCCGAGC
ATTACAGCGAATGGCAGAACGGGCGACGCGACTCGCTGCTCAGCCTGCACGGCGATTTCCTGTTCAACGATGCAATCGGC
TTCACCTTTACCGGCTATTACGAGAACAAGCATGGGTATGGCATCGGCGGCACTCCGCCGAGCACGGCAGCAGGCCTGTA
CAACGATGCCATCGCCGGCACGCCGGGGCGCACCGACATCGCCATCAACGACCCGCAGATCGTCGATGCCACCGGCACTG
TCACCCACGTCGGTGCGATGACGCGGCGCGAAGAAATCATGGGGGGCGATCGCTATGGCCTCACCACGGCGGTGTCATGG
GAGACCGAGCACAACAAATTCGAAGTCGGTGCGTGGTACGAAAACTACGACTTCGATCAGGTGCGTCCGTTGTACAACCT
GGACCCGGCCACCGGCGCATTGCTCAAGGGCGCGCTGCCGATCGTCATCTACTACGACAACCACTTCTCCACCGAAGTGA
AGCAGCTCTACATCAAGGACACGCTGCGCCTGCTCGACGACCGCTTGACGATGGAGTTCGGTGCCAAGGGGCTGGATGTC
AAACGCGACTACAACGGCATCGCCAATCTGGATGATTTCAATGTCGGCGTGCGCCGCGATGTCACCATCAAGAACAGCGA
CTGGTTCCAGCCCCAGGTCGGCGCCAGCTTCCAGCTTGCCGAGGGCGTGCAGGTGTTCGCCAACTATGCGGAAAACTTCA
GCTCGGCGCCGCGGCTGGCGCTGACCTCGGGTGCGTTCAACCCCGATATCGCACCGGAAGAGTCCACCAACATCGATATC
GGCATCCGCGCCGAATCCACGCAGTGGAGCGGCTACATCGCCGCCTACAAGATCGATTACGAGAGCCGCATCATCGCGCT
GACCGACCCGGACCCGCTGGTGGTGGCGCCCACCGTCTACGCCAACGTCGGCGACGTGCAGACCTATGGCGCGGAAATCT
CCGGCATGTGGAAGCCGGCGCCAGGCTGGCGGCTGGGCGCATCGCTGACCTGGAACAACTCCGAGTTCCAGGACAACTAT
TTCGGCCCGGTCAGCGGCAACCTGGTGCAGGTGAAAGGCAACGAGGTGCCGGATGCGCCGAAGGTGATGTTCAGCGTCAA
CGGCGGTTGGGAAGGCACACATTTGTTTGCCAACCTCGATGCCAAATACACCGGCAAGCGCTACGGCGATACGCTCAATA
CCGATCGGGTAGATGCCACCCTCATCGTCAACGGCAGCGTCGGGTACCAGGGCGAAGACGGCGGGTTTCTTGCCGGTGGC
CGGCTGCAGTTGTCGGTCTACAACCTGTTCGACAAGGACGATGCGATCGGGGCGGTATTTCCCAACGAAAGCTCGGGCTC
GTATCAGTTGATCGCACCACGGCAGCTGTTCGCCAGCCTGACCTACACATTCTGA

Upstream 100 bases:

>100_bases
GCGCTGGTTATGGTCACTGCACGCCGCATCCGCGGTATCAGCCGGTCTCGGGGGAGCGCCCGGTCACTCAGCACGCCACA
CGTCTCCAGGGGTTGATTGC

Downstream 100 bases:

>100_bases
AGTGCAGCCGCGGCCGGCAGGGTTGCCGGTCGCGTGCGTTGGTCCACGACATGCAGGGGACGTGCGTTGATGCAAGGCAA
TCACACGGGAGCGATGACGC

Product: TonB-dependent outer membrane receptor

Products: NA

Alternate protein names: NB-Dependent Outer Membrane Receptor; NB-Dependent Receptor Domain Protein; Nb-Dependent Receptor; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Protein; Nb-Dependent Outer Membrane Receptor Protein; Outer Membrane Protein; NB-Dependent Receptor Plug; Outer Membrane Receptor Protein; NB Dependent Receptor Protein; Outer Membrane Heme Receptor; NB-Dependent Siderophore Receptor

Number of amino acids: Translated: 764; Mature: 763

Protein sequence:

>764_residues
MPKCSNTDRLAASVADILATTRPRRALASMTLLLAGAQSLPALAQDARTLDAVSVVGTGSTRTTASISADEIQAQVPGVA
PQQLLASLPGVNVQTSDPFGLYEFGDSMTIRGFSANQIGVTLDGIPIETFDTREGGPITRYVSSENLLDVTVSAGSGDVT
QPSYHALGGAIRYTSLPPKGGDSWSGNLTQTIGSDDLVRSFVRLDTPNWWEGGPSAYLSASRTQGGVWDMEPATQKSDHF
EANIRQAWDAGSLTLGWIYNNRKDYDVQSYNSDGSVAWDLHERITGNPEVDAEHYSEWQNGRRDSLLSLHGDFLFNDAIG
FTFTGYYENKHGYGIGGTPPSTAAGLYNDAIAGTPGRTDIAINDPQIVDATGTVTHVGAMTRREEIMGGDRYGLTTAVSW
ETEHNKFEVGAWYENYDFDQVRPLYNLDPATGALLKGALPIVIYYDNHFSTEVKQLYIKDTLRLLDDRLTMEFGAKGLDV
KRDYNGIANLDDFNVGVRRDVTIKNSDWFQPQVGASFQLAEGVQVFANYAENFSSAPRLALTSGAFNPDIAPEESTNIDI
GIRAESTQWSGYIAAYKIDYESRIIALTDPDPLVVAPTVYANVGDVQTYGAEISGMWKPAPGWRLGASLTWNNSEFQDNY
FGPVSGNLVQVKGNEVPDAPKVMFSVNGGWEGTHLFANLDAKYTGKRYGDTLNTDRVDATLIVNGSVGYQGEDGGFLAGG
RLQLSVYNLFDKDDAIGAVFPNESSGSYQLIAPRQLFASLTYTF

Sequences:

>Translated_764_residues
MPKCSNTDRLAASVADILATTRPRRALASMTLLLAGAQSLPALAQDARTLDAVSVVGTGSTRTTASISADEIQAQVPGVA
PQQLLASLPGVNVQTSDPFGLYEFGDSMTIRGFSANQIGVTLDGIPIETFDTREGGPITRYVSSENLLDVTVSAGSGDVT
QPSYHALGGAIRYTSLPPKGGDSWSGNLTQTIGSDDLVRSFVRLDTPNWWEGGPSAYLSASRTQGGVWDMEPATQKSDHF
EANIRQAWDAGSLTLGWIYNNRKDYDVQSYNSDGSVAWDLHERITGNPEVDAEHYSEWQNGRRDSLLSLHGDFLFNDAIG
FTFTGYYENKHGYGIGGTPPSTAAGLYNDAIAGTPGRTDIAINDPQIVDATGTVTHVGAMTRREEIMGGDRYGLTTAVSW
ETEHNKFEVGAWYENYDFDQVRPLYNLDPATGALLKGALPIVIYYDNHFSTEVKQLYIKDTLRLLDDRLTMEFGAKGLDV
KRDYNGIANLDDFNVGVRRDVTIKNSDWFQPQVGASFQLAEGVQVFANYAENFSSAPRLALTSGAFNPDIAPEESTNIDI
GIRAESTQWSGYIAAYKIDYESRIIALTDPDPLVVAPTVYANVGDVQTYGAEISGMWKPAPGWRLGASLTWNNSEFQDNY
FGPVSGNLVQVKGNEVPDAPKVMFSVNGGWEGTHLFANLDAKYTGKRYGDTLNTDRVDATLIVNGSVGYQGEDGGFLAGG
RLQLSVYNLFDKDDAIGAVFPNESSGSYQLIAPRQLFASLTYTF
>Mature_763_residues
PKCSNTDRLAASVADILATTRPRRALASMTLLLAGAQSLPALAQDARTLDAVSVVGTGSTRTTASISADEIQAQVPGVAP
QQLLASLPGVNVQTSDPFGLYEFGDSMTIRGFSANQIGVTLDGIPIETFDTREGGPITRYVSSENLLDVTVSAGSGDVTQ
PSYHALGGAIRYTSLPPKGGDSWSGNLTQTIGSDDLVRSFVRLDTPNWWEGGPSAYLSASRTQGGVWDMEPATQKSDHFE
ANIRQAWDAGSLTLGWIYNNRKDYDVQSYNSDGSVAWDLHERITGNPEVDAEHYSEWQNGRRDSLLSLHGDFLFNDAIGF
TFTGYYENKHGYGIGGTPPSTAAGLYNDAIAGTPGRTDIAINDPQIVDATGTVTHVGAMTRREEIMGGDRYGLTTAVSWE
TEHNKFEVGAWYENYDFDQVRPLYNLDPATGALLKGALPIVIYYDNHFSTEVKQLYIKDTLRLLDDRLTMEFGAKGLDVK
RDYNGIANLDDFNVGVRRDVTIKNSDWFQPQVGASFQLAEGVQVFANYAENFSSAPRLALTSGAFNPDIAPEESTNIDIG
IRAESTQWSGYIAAYKIDYESRIIALTDPDPLVVAPTVYANVGDVQTYGAEISGMWKPAPGWRLGASLTWNNSEFQDNYF
GPVSGNLVQVKGNEVPDAPKVMFSVNGGWEGTHLFANLDAKYTGKRYGDTLNTDRVDATLIVNGSVGYQGEDGGFLAGGR
LQLSVYNLFDKDDAIGAVFPNESSGSYQLIAPRQLFASLTYTF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 82919; Mature: 82788

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKCSNTDRLAASVADILATTRPRRALASMTLLLAGAQSLPALAQDARTLDAVSVVGTGS
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEEEEEECCC
TRTTASISADEIQAQVPGVAPQQLLASLPGVNVQTSDPFGLYEFGDSMTIRGFSANQIGV
CCEEEECCHHHHHHHCCCCCHHHHHHHCCCCCEECCCCCCCEECCCCEEEEECCCCEEEE
TLDGIPIETFDTREGGPITRYVSSENLLDVTVSAGSGDVTQPSYHALGGAIRYTSLPPKG
EECCEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCHHHCCCEEEECCCCCCC
GDSWSGNLTQTIGSDDLVRSFVRLDTPNWWEGGPSAYLSASRTQGGVWDMEPATQKSDHF
CCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCCCH
EANIRQAWDAGSLTLGWIYNNRKDYDVQSYNSDGSVAWDLHERITGNPEVDAEHYSEWQN
HHHHHHCCCCCCEEEEEEECCCCCCCCEEECCCCCEEEEEHHHCCCCCCCCHHHHHHHHC
GRRDSLLSLHGDFLFNDAIGFTFTGYYENKHGYGIGGTPPSTAAGLYNDAIAGTPGRTDI
CCCCCEEEECCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEE
AINDPQIVDATGTVTHVGAMTRREEIMGGDRYGLTTAVSWETEHNKFEVGAWYENYDFDQ
EECCCEEEECCCCEEHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCHHH
VRPLYNLDPATGALLKGALPIVIYYDNHFSTEVKQLYIKDTLRLLDDRLTMEFGAKGLDV
CCCCCCCCCCHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
KRDYNGIANLDDFNVGVRRDVTIKNSDWFQPQVGASFQLAEGVQVFANYAENFSSAPRLA
ECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCEE
LTSGAFNPDIAPEESTNIDIGIRAESTQWSGYIAAYKIDYESRIIALTDPDPLVVAPTVY
EECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCEEEEEECCCCEEECCEEE
ANVGDVQTYGAEISGMWKPAPGWRLGASLTWNNSEFQDNYFGPVSGNLVQVKGNEVPDAP
ECCCCCEECCCCCCCCCCCCCCCEECCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC
KVMFSVNGGWEGTHLFANLDAKYTGKRYGDTLNTDRVDATLIVNGSVGYQGEDGGFLAGG
EEEEEECCCCCCEEEEEECCCCCCCHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEECC
RLQLSVYNLFDKDDAIGAVFPNESSGSYQLIAPRQLFASLTYTF
EEEEEEEEECCCCCCEEEECCCCCCCCEEEEEHHHHHHHHCCCC
>Mature Secondary Structure 
PKCSNTDRLAASVADILATTRPRRALASMTLLLAGAQSLPALAQDARTLDAVSVVGTGS
CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEEEEEECCC
TRTTASISADEIQAQVPGVAPQQLLASLPGVNVQTSDPFGLYEFGDSMTIRGFSANQIGV
CCEEEECCHHHHHHHCCCCCHHHHHHHCCCCCEECCCCCCCEECCCCEEEEECCCCEEEE
TLDGIPIETFDTREGGPITRYVSSENLLDVTVSAGSGDVTQPSYHALGGAIRYTSLPPKG
EECCEEEEEECCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCHHHCCCEEEECCCCCCC
GDSWSGNLTQTIGSDDLVRSFVRLDTPNWWEGGPSAYLSASRTQGGVWDMEPATQKSDHF
CCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCEECCCCCCCCCCCH
EANIRQAWDAGSLTLGWIYNNRKDYDVQSYNSDGSVAWDLHERITGNPEVDAEHYSEWQN
HHHHHHCCCCCCEEEEEEECCCCCCCCEEECCCCCEEEEEHHHCCCCCCCCHHHHHHHHC
GRRDSLLSLHGDFLFNDAIGFTFTGYYENKHGYGIGGTPPSTAAGLYNDAIAGTPGRTDI
CCCCCEEEECCCEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCCCEE
AINDPQIVDATGTVTHVGAMTRREEIMGGDRYGLTTAVSWETEHNKFEVGAWYENYDFDQ
EECCCEEEECCCCEEHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCHHH
VRPLYNLDPATGALLKGALPIVIYYDNHFSTEVKQLYIKDTLRLLDDRLTMEFGAKGLDV
CCCCCCCCCCHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
KRDYNGIANLDDFNVGVRRDVTIKNSDWFQPQVGASFQLAEGVQVFANYAENFSSAPRLA
ECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCEE
LTSGAFNPDIAPEESTNIDIGIRAESTQWSGYIAAYKIDYESRIIALTDPDPLVVAPTVY
EECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCEEEEEECCCCEEECCEEE
ANVGDVQTYGAEISGMWKPAPGWRLGASLTWNNSEFQDNYFGPVSGNLVQVKGNEVPDAP
ECCCCCEECCCCCCCCCCCCCCCEECCEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC
KVMFSVNGGWEGTHLFANLDAKYTGKRYGDTLNTDRVDATLIVNGSVGYQGEDGGFLAGG
EEEEEECCCCCCEEEEEECCCCCCCHHCCCCCCCCCCEEEEEEECCCCCCCCCCCEEECC
RLQLSVYNLFDKDDAIGAVFPNESSGSYQLIAPRQLFASLTYTF
EEEEEEEEECCCCCCEEEECCCCCCCCEEEEEHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA