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The map label for this gene is yncD [C]

Identifier: 78049007

GI number: 78049007

Start: 3953808

End: 3955868

Strand: Reverse

Name: yncD [C]

Synonym: XCV3451

Alternate gene names: 78049007

Gene position: 3955868-3953808 (Counterclockwise)

Preceding gene: 78049008

Following gene: 78049006

Centisome position: 76.39

GC content: 66.38

Gene sequence:

>2061_bases
GTGCGGCCGTGCAGTCACGGCGAAGGGTTGGTCATGCGTTTGCGGTTGTTGAAAGCGATGTGGTATGCGCCGTCGTTGGC
GCTGGTGTGGGAGCCTGCATGCGATGTGCAGGCGCAAGACGCGGCACTCACGCTGGGCAAGGTGCAGGTGAGCGAACATG
CGCAGCGCAGCCCGAGCACGGCGCGCGTGCTGAGCTCGGTGGATGTGATTGGCGGCGAGCTGCTGCACGATCAACATGTG
GACTACAGCTGGGAACTGCTGATGCGCGCGCCCGGGGTGCAGGTCACCCAATTCCGCATGGGCACCGATGCGGGGCGCTT
TTCGTTCCGCGGATTCAATGGCGAGGGGCGCATCAATGCGGTGAAGCTGCTGATCGACGGCATCCCCAGCAACGATAACG
CCGGCGCCATGCCGTACCTGGACGCAGTGTTTCCGCAGGACATCAGCGCCATCGAGATCGTGCGCGGCACCAACGACGCG
CGCTATGGCCTGAATGCGATTGCCGGCAGCGTGGACGTGCTCACCCGTACCGGCGGCAACGACGGCCGCTTGAGCGTGAC
GGCCGGCAGCTTCGATGCGCGCGAGGTGCAACTGAGCAAAGGTTTCGAACAGGGCGCCTGGAGCCAGAACTACGTGCTGG
CCTGGCGCGACTCGGACGGGTATCGCGATCATGCCGACGCACGCAAGCGCAGCGTGGCGGGCAAGTGGTTCTACACCGAC
CCGGACGGCGCATTCCGCGCGGGGCTCACCACGCGGTACTACGACAACCATGCCTTGGAAGCCGGCTATCTGGATGCCGC
CACCGCGCGTGCGGCGCCGCGCAGTTCGCCGGACTATGCGCAGAACGACCGAAGCGAGCGTCGTCTGCGCCAGACTGCGT
TGCATGCGGACGGTGCGCTCGGTGAGCAGGCGCAATGGAGCGCCAAGGCCTACCAGAACGACTACCGCAACCAACGCTGG
GTGCGGTTTTCTGCGGCCGGGCTGCAGCAGGAACGCGATACCGACGAAACCCATCGCGGGCTGCTGCTGCGTAGCAACTG
GCAGCCGGACTGGGGTGCGCTGCAGGCCAACCTGGAAGCCGGGGTGGATGCGCAGTGGCAGGACAACCAATCGCAACGGT
ATCGCACGGTGGCCCGTGTGCGCGGGGCACAGCTGCGCGATTGGGACTACGACCTGCGCACGCGTGGCGCGTATGTGCAG
GCGGTGCTGACCCCCATTGCGCGCCTGCAGCTGGTGCCGGGGTATCGCATCGATCGTGTCGATGGACAGCTGCACGACGT
GCTGGCCGGCAGCGTTGCGCCGGTCTACGACTACGGCACCATCAAGCAACCCAAGTTCAGTGCGAGCTACCGCGTGGGCG
AGCAGAGCAGCGTGTATGCGAACTGGGGGCGCACCTTCCAGATCGGCAGCGGCGATGGCGCCTACCGTCGCCAGCCCGGC
AACCTGGGTCCGTCGATCAACGATGGCTGGGAGACCGGCTTCAAGTTCGCACCGTCGTCCCTGCTGGACGGGCGCCTGGC
GTATTGGGAGCAGCGCGCATCCGGCGAGGTGGCGACCGTTCTCGGCGTCAATGGCGTGGTAGGCATCGGCGATGTGGCCA
ATGTCGGCCGTACGCTGCGGCGCGGCTGGGATGCGCAGCTCAACCTGCAGCCGGCCGAGCATTGGCGTGCATGGGTTTCG
TATTCGCGGCAGAAGGCCAGCATCGCCACACCCGATCCGAGCGCCCCGGCCACGCGCGGCAAGGAGATCGAAAACGTGCC
GCACTGGTTGGCCACCGCCGGGTTGGAGTGGCAGGTCAGTTCGTCGGTGCAGGTGAGCGCCTGGGGCAACGCACAAGGCG
ATTACTACCTGGAACGCACCAACACGTTGGGCCGCACCGGTGGCTACGCCTTGCTCAACCTGGGCGCGCGCTGGGCGGTG
GACGCGCGCAATGCGCTCAGCCTGCAGCTACGCAATGTCACCGATCGCGCGTATGTGTACGCCTGGTACGACAGCGGCAG
CTCCGGTTACTCGCCCGGCGATGGACGTGCGTTGTCGGTGTCGTGGGATTGGAGCTTCTGA

Upstream 100 bases:

>100_bases
GTACGCGCCTGAGGTTGTCGGCGCCCTGCCGGGCAGTGCGGGCGACTCGCTTCTTATCGAGTGATGCCGATGTGCGCCGC
GATGGTGGCAGCGCACGGCT

Downstream 100 bases:

>100_bases
TGCATGCAACGATTGACCACGGTGGCGTGGACGAGTCGCGCCAAACCAGCCGCTGGCGCTTCTATCGCGCGGTGTGGCGC
TGGCATTTTTATGCCGGGCT

Product: TonB-dependent outer membrane receptor (C-terminal fragment)

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Outer Membrane Receptor Protein; NB-Dependent Receptor Domain Protein; NB-Dependent Outer Membrane Receptor; NB-Receptor Protein; Outer Membrane Receptor Protein; NB-Dependent Receptor YncD; NB-Dependent Receptor Plug Domain-Containing; Nb-Dependent Receptor; Outer Membrane Receptor Proteins Mostly Fe Transport; NB-Dependent Receptor For Iron Transport; NB-Dependent Siderophore Receptor Protein

Number of amino acids: Translated: 686; Mature: 686

Protein sequence:

>686_residues
MRPCSHGEGLVMRLRLLKAMWYAPSLALVWEPACDVQAQDAALTLGKVQVSEHAQRSPSTARVLSSVDVIGGELLHDQHV
DYSWELLMRAPGVQVTQFRMGTDAGRFSFRGFNGEGRINAVKLLIDGIPSNDNAGAMPYLDAVFPQDISAIEIVRGTNDA
RYGLNAIAGSVDVLTRTGGNDGRLSVTAGSFDAREVQLSKGFEQGAWSQNYVLAWRDSDGYRDHADARKRSVAGKWFYTD
PDGAFRAGLTTRYYDNHALEAGYLDAATARAAPRSSPDYAQNDRSERRLRQTALHADGALGEQAQWSAKAYQNDYRNQRW
VRFSAAGLQQERDTDETHRGLLLRSNWQPDWGALQANLEAGVDAQWQDNQSQRYRTVARVRGAQLRDWDYDLRTRGAYVQ
AVLTPIARLQLVPGYRIDRVDGQLHDVLAGSVAPVYDYGTIKQPKFSASYRVGEQSSVYANWGRTFQIGSGDGAYRRQPG
NLGPSINDGWETGFKFAPSSLLDGRLAYWEQRASGEVATVLGVNGVVGIGDVANVGRTLRRGWDAQLNLQPAEHWRAWVS
YSRQKASIATPDPSAPATRGKEIENVPHWLATAGLEWQVSSSVQVSAWGNAQGDYYLERTNTLGRTGGYALLNLGARWAV
DARNALSLQLRNVTDRAYVYAWYDSGSSGYSPGDGRALSVSWDWSF

Sequences:

>Translated_686_residues
MRPCSHGEGLVMRLRLLKAMWYAPSLALVWEPACDVQAQDAALTLGKVQVSEHAQRSPSTARVLSSVDVIGGELLHDQHV
DYSWELLMRAPGVQVTQFRMGTDAGRFSFRGFNGEGRINAVKLLIDGIPSNDNAGAMPYLDAVFPQDISAIEIVRGTNDA
RYGLNAIAGSVDVLTRTGGNDGRLSVTAGSFDAREVQLSKGFEQGAWSQNYVLAWRDSDGYRDHADARKRSVAGKWFYTD
PDGAFRAGLTTRYYDNHALEAGYLDAATARAAPRSSPDYAQNDRSERRLRQTALHADGALGEQAQWSAKAYQNDYRNQRW
VRFSAAGLQQERDTDETHRGLLLRSNWQPDWGALQANLEAGVDAQWQDNQSQRYRTVARVRGAQLRDWDYDLRTRGAYVQ
AVLTPIARLQLVPGYRIDRVDGQLHDVLAGSVAPVYDYGTIKQPKFSASYRVGEQSSVYANWGRTFQIGSGDGAYRRQPG
NLGPSINDGWETGFKFAPSSLLDGRLAYWEQRASGEVATVLGVNGVVGIGDVANVGRTLRRGWDAQLNLQPAEHWRAWVS
YSRQKASIATPDPSAPATRGKEIENVPHWLATAGLEWQVSSSVQVSAWGNAQGDYYLERTNTLGRTGGYALLNLGARWAV
DARNALSLQLRNVTDRAYVYAWYDSGSSGYSPGDGRALSVSWDWSF
>Mature_686_residues
MRPCSHGEGLVMRLRLLKAMWYAPSLALVWEPACDVQAQDAALTLGKVQVSEHAQRSPSTARVLSSVDVIGGELLHDQHV
DYSWELLMRAPGVQVTQFRMGTDAGRFSFRGFNGEGRINAVKLLIDGIPSNDNAGAMPYLDAVFPQDISAIEIVRGTNDA
RYGLNAIAGSVDVLTRTGGNDGRLSVTAGSFDAREVQLSKGFEQGAWSQNYVLAWRDSDGYRDHADARKRSVAGKWFYTD
PDGAFRAGLTTRYYDNHALEAGYLDAATARAAPRSSPDYAQNDRSERRLRQTALHADGALGEQAQWSAKAYQNDYRNQRW
VRFSAAGLQQERDTDETHRGLLLRSNWQPDWGALQANLEAGVDAQWQDNQSQRYRTVARVRGAQLRDWDYDLRTRGAYVQ
AVLTPIARLQLVPGYRIDRVDGQLHDVLAGSVAPVYDYGTIKQPKFSASYRVGEQSSVYANWGRTFQIGSGDGAYRRQPG
NLGPSINDGWETGFKFAPSSLLDGRLAYWEQRASGEVATVLGVNGVVGIGDVANVGRTLRRGWDAQLNLQPAEHWRAWVS
YSRQKASIATPDPSAPATRGKEIENVPHWLATAGLEWQVSSSVQVSAWGNAQGDYYLERTNTLGRTGGYALLNLGARWAV
DARNALSLQLRNVTDRAYVYAWYDSGSSGYSPGDGRALSVSWDWSF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75806; Mature: 75806

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: PS01140 GLYCOSYL_HYDROL_F45

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPCSHGEGLVMRLRLLKAMWYAPSLALVWEPACDVQAQDAALTLGKVQVSEHAQRSPST
CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEHHHHHHCCCCH
ARVLSSVDVIGGELLHDQHVDYSWELLMRAPGVQVTQFRMGTDAGRFSFRGFNGEGRINA
HHHHHHHHHHCCHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCCEEE
VKLLIDGIPSNDNAGAMPYLDAVFPQDISAIEIVRGTNDARYGLNAIAGSVDVLTRTGGN
EEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCEEEEEECCCC
DGRLSVTAGSFDAREVQLSKGFEQGAWSQNYVLAWRDSDGYRDHADARKRSVAGKWFYTD
CCEEEEEECCCCCEEEHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEC
PDGAFRAGLTTRYYDNHALEAGYLDAATARAAPRSSPDYAQNDRSERRLRQTALHADGAL
CCCCEECCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCC
GEQAQWSAKAYQNDYRNQRWVRFSAAGLQQERDTDETHRGLLLRSNWQPDWGALQANLEA
CCCHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCCHHHCCEEEECCCCCCHHHEEECHHC
GVDAQWQDNQSQRYRTVARVRGAQLRDWDYDLRTRGAYVQAVLTPIARLQLVPGYRIDRV
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHEEECCCCEEECC
DGQLHDVLAGSVAPVYDYGTIKQPKFSASYRVGEQSSVYANWGRTFQIGSGDGAYRRQPG
CCHHHHHHHCCCCCEECCCCCCCCCCCCCEECCCCCCEEECCCCEEEECCCCCCCCCCCC
NLGPSINDGWETGFKFAPSSLLDGRLAYWEQRASGEVATVLGVNGVVGIGDVANVGRTLR
CCCCCCCCCHHCCCEECCHHHHCCHHHHHHHHCCCCEEEEEECCCCEECCHHHHHHHHHH
RGWDAQLNLQPAEHWRAWVSYSRQKASIATPDPSAPATRGKEIENVPHWLATAGLEWQVS
CCCCCEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHCCCEEEEC
SSVQVSAWGNAQGDYYLERTNTLGRTGGYALLNLGARWAVDARNALSLQLRNVTDRAYVY
CCEEEEECCCCCCCEEEEECCCCCCCCCEEEEECCCEEEECCCCEEEEEEECCCCCEEEE
AWYDSGSSGYSPGDGRALSVSWDWSF
EEEECCCCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MRPCSHGEGLVMRLRLLKAMWYAPSLALVWEPACDVQAQDAALTLGKVQVSEHAQRSPST
CCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEHHHHHHCCCCH
ARVLSSVDVIGGELLHDQHVDYSWELLMRAPGVQVTQFRMGTDAGRFSFRGFNGEGRINA
HHHHHHHHHHCCHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCEEEECCCCCCCEEE
VKLLIDGIPSNDNAGAMPYLDAVFPQDISAIEIVRGTNDARYGLNAIAGSVDVLTRTGGN
EEEEEECCCCCCCCCCCCHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCEEEEEECCCC
DGRLSVTAGSFDAREVQLSKGFEQGAWSQNYVLAWRDSDGYRDHADARKRSVAGKWFYTD
CCEEEEEECCCCCEEEHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEC
PDGAFRAGLTTRYYDNHALEAGYLDAATARAAPRSSPDYAQNDRSERRLRQTALHADGAL
CCCCEECCCEEEEECCCCCCCCCCCHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCC
GEQAQWSAKAYQNDYRNQRWVRFSAAGLQQERDTDETHRGLLLRSNWQPDWGALQANLEA
CCCHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCCHHHCCEEEECCCCCCHHHEEECHHC
GVDAQWQDNQSQRYRTVARVRGAQLRDWDYDLRTRGAYVQAVLTPIARLQLVPGYRIDRV
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHEEECCCCEEECC
DGQLHDVLAGSVAPVYDYGTIKQPKFSASYRVGEQSSVYANWGRTFQIGSGDGAYRRQPG
CCHHHHHHHCCCCCEECCCCCCCCCCCCCEECCCCCCEEECCCCEEEECCCCCCCCCCCC
NLGPSINDGWETGFKFAPSSLLDGRLAYWEQRASGEVATVLGVNGVVGIGDVANVGRTLR
CCCCCCCCCHHCCCEECCHHHHCCHHHHHHHHCCCCEEEEEECCCCEECCHHHHHHHHHH
RGWDAQLNLQPAEHWRAWVSYSRQKASIATPDPSAPATRGKEIENVPHWLATAGLEWQVS
CCCCCEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHCCCEEEEC
SSVQVSAWGNAQGDYYLERTNTLGRTGGYALLNLGARWAVDARNALSLQLRNVTDRAYVY
CCEEEEECCCCCCCEEEEECCCCCCCCCEEEEECCCEEEECCCCEEEEEEECCCCCEEEE
AWYDSGSSGYSPGDGRALSVSWDWSF
EEEECCCCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA