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The map label for this gene is xynB [H]

Identifier: 78048848

GI number: 78048848

Start: 3761802

End: 3762707

Strand: Reverse

Name: xynB [H]

Synonym: XCV3292

Alternate gene names: 78048848

Gene position: 3762707-3761802 (Counterclockwise)

Preceding gene: 78048849

Following gene: 78048844

Centisome position: 72.66

GC content: 64.79

Gene sequence:

>906_bases
ATGGCAGTTGCGCTGCTGCTTGTGCATGGGCTCGCACCGGCGCGCGCCTGGCAGCCAGCGCCTGGTCAGGTCGAAATACC
GCTTTGGCCGCGCGCGGTGCCTGATGCGGTGCGCCACCCGAAGCCCGAATCAGTGGGCACCGGCGAGGGGCGTTACCCAT
GGACCAAGGTCAGCGATGTCAGCCGCTCGACGATGACGGTATACAAGCCCAAGGCTCACAACACCGGCGCGGCGGTGCTG
GTGTTCCCGGGCGGTGGTTATCAAGTCCTGGCCATGGATCTGGAAGGGACCCAAATCTGCGACTGGCTGACCGCGCGCGG
TATCACCTGTGTGCTGTTGAAATACCGTGTACCGAACTCGGGGCCGACCTGGGTCAACGACCGCCGCTATTACCCGAAGG
TGCAAACAGCCCTGCAGGATGCCCAACGAGCGTTGGGGATGGTGCGCGAGCAGACGGACCAGTTAGCCGTGGATCCGCAC
AAGATCGGTGTGCTCGGCTTTTCTGCCGGTGGTCACCTGGTGGCCGCGATCAGTACGCATTTTGCAGCGCGCACGTATCT
GCCGGTGGATGCCGCCGATCGCGTGAGCTGTCGCCCGGATTTCGCCATTGCCGTGTATCCGGGCCATTTGTGGGCGCACG
AGGACGAGGATGACGCCACCCGCGATCCCACCCACCTGGACCTGCGCCCGGACATTCGCGTCGTCGCCGATACCCCGCCG
ACCTTCCTGTTGCAGGCGCAGGACGATCAGGTGGACGGCGTTTCGCAGGTGCTGGCGTACTACGTCGCGCTCAACCATGC
CGACGTGCCGGTGGAAATGCATGTGTACGCCCAGGGTGGCCATGCCTTCGGTCTGCGCGCCAAGGGGCTGCCGATTGCGC
GGTGGCCGCACTTGGTGGAAACCTAA

Upstream 100 bases:

>100_bases
GTGTCTCACGCGCGTCATTGGCGCATGAGTTCACGACGTGCTTTCTGTTTCTTCAACCCTTCAAGGTCCAATCGTGCAAA
TCAGGTCGTGTCATGGGTGG

Downstream 100 bases:

>100_bases
TTGCACACGATCGGCGTGCTTGATGCGACTGGCGCGCGCTGAGTGTGACTGTGCGCAAGCCTGCTGATCAGGCATCCCCA
TGTGTACGCAGCGCATACCG

Product: xylanase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MAVALLLVHGLAPARAWQPAPGQVEIPLWPRAVPDAVRHPKPESVGTGEGRYPWTKVSDVSRSTMTVYKPKAHNTGAAVL
VFPGGGYQVLAMDLEGTQICDWLTARGITCVLLKYRVPNSGPTWVNDRRYYPKVQTALQDAQRALGMVREQTDQLAVDPH
KIGVLGFSAGGHLVAAISTHFAARTYLPVDAADRVSCRPDFAIAVYPGHLWAHEDEDDATRDPTHLDLRPDIRVVADTPP
TFLLQAQDDQVDGVSQVLAYYVALNHADVPVEMHVYAQGGHAFGLRAKGLPIARWPHLVET

Sequences:

>Translated_301_residues
MAVALLLVHGLAPARAWQPAPGQVEIPLWPRAVPDAVRHPKPESVGTGEGRYPWTKVSDVSRSTMTVYKPKAHNTGAAVL
VFPGGGYQVLAMDLEGTQICDWLTARGITCVLLKYRVPNSGPTWVNDRRYYPKVQTALQDAQRALGMVREQTDQLAVDPH
KIGVLGFSAGGHLVAAISTHFAARTYLPVDAADRVSCRPDFAIAVYPGHLWAHEDEDDATRDPTHLDLRPDIRVVADTPP
TFLLQAQDDQVDGVSQVLAYYVALNHADVPVEMHVYAQGGHAFGLRAKGLPIARWPHLVET
>Mature_300_residues
AVALLLVHGLAPARAWQPAPGQVEIPLWPRAVPDAVRHPKPESVGTGEGRYPWTKVSDVSRSTMTVYKPKAHNTGAAVLV
FPGGGYQVLAMDLEGTQICDWLTARGITCVLLKYRVPNSGPTWVNDRRYYPKVQTALQDAQRALGMVREQTDQLAVDPHK
IGVLGFSAGGHLVAAISTHFAARTYLPVDAADRVSCRPDFAIAVYPGHLWAHEDEDDATRDPTHLDLRPDIRVVADTPPT
FLLQAQDDQVDGVSQVLAYYVALNHADVPVEMHVYAQGGHAFGLRAKGLPIARWPHLVET

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 32891; Mature: 32760

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVALLLVHGLAPARAWQPAPGQVEIPLWPRAVPDAVRHPKPESVGTGEGRYPWTKVSDV
CCEEEEEHHCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
SRSTMTVYKPKAHNTGAAVLVFPGGGYQVLAMDLEGTQICDWLTARGITCVLLKYRVPNS
CCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHCCEEEEEEEEECCCC
GPTWVNDRRYYPKVQTALQDAQRALGMVREQTDQLAVDPHKIGVLGFSAGGHLVAAISTH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCEEEEEEHHH
FAARTYLPVDAADRVSCRPDFAIAVYPGHLWAHEDEDDATRDPTHLDLRPDIRVVADTPP
HHEEEECCCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCEEECCCCEEEEECCCC
TFLLQAQDDQVDGVSQVLAYYVALNHADVPVEMHVYAQGGHAFGLRAKGLPIARWPHLVE
EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEECCCCHHCCCHHHC
T
C
>Mature Secondary Structure 
AVALLLVHGLAPARAWQPAPGQVEIPLWPRAVPDAVRHPKPESVGTGEGRYPWTKVSDV
CEEEEEHHCCCCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCC
SRSTMTVYKPKAHNTGAAVLVFPGGGYQVLAMDLEGTQICDWLTARGITCVLLKYRVPNS
CCCEEEEECCCCCCCCEEEEEECCCCEEEEEEECCCCHHHHHHHHCCEEEEEEEEECCCC
GPTWVNDRRYYPKVQTALQDAQRALGMVREQTDQLAVDPHKIGVLGFSAGGHLVAAISTH
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCEEEEEEHHH
FAARTYLPVDAADRVSCRPDFAIAVYPGHLWAHEDEDDATRDPTHLDLRPDIRVVADTPP
HHEEEECCCCCCCCCCCCCCEEEEEECCCEECCCCCCCCCCCCCEEECCCCEEEEECCCC
TFLLQAQDDQVDGVSQVLAYYVALNHADVPVEMHVYAQGGHAFGLRAKGLPIARWPHLVE
EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEECCCCHHCCCHHHC
T
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]