| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is blh [H]
Identifier: 78048001
GI number: 78048001
Start: 2778451
End: 2779317
Strand: Reverse
Name: blh [H]
Synonym: XCV2445
Alternate gene names: 78048001
Gene position: 2779317-2778451 (Counterclockwise)
Preceding gene: 78048004
Following gene: 78048000
Centisome position: 53.67
GC content: 63.55
Gene sequence:
>867_bases ATGAGCGCGCCGCACGTGGCGACATTCTTCGACCCGGTGACCTTTACCGCCAGCCACGTGGTCCGAGACCCTGGCTCGTC GGCCTGCGCCATCATCGACAGCGTGCTCGACTTCGACATGGCGTCAGGCCGAACTGCGACCGGTTCGGCTGAAGCGCTTG CGCACTACGTGCGTGACGAGGCGTTACAGGTGCAATGGCACCTCGAAACACACGCCCATGCCGACCACCTGTCGGCTGCG CCGTGGCTGCAGCAGCAGGTGGGCGGACAGCTCGCCATCGGCGAGCGCATCACGGCCGTGCAGCAGACCTTCGGCAACCT TTTCAACGCCGGCAAGGAATTCAGCCGGGACGGCAGCCAGTTCGATCATCTGTTCGCCGACGGCGCAGCATTCACGATCG GGCATCTGCACGCAGTGGCGCTGCATGTTCCCGGACATACGCCCGCGTGCATGGCTTACGTCATCGGCGATGCGCTGTTT TCAGGCGATACGTTGTTCATGCCGGACTACGGCACGGTGCGCTGCGATTTTCCGGGCGGCTCGGCACGCCAGCTCTATCG CTCCATCCAACGGCTGCTGAAACTGCCCGATGCCACGCGTGTCTTCGTCTGCCACGACTACAAGTCCGCAGGCCGGGCCC ATTTCGCATGGGAAACCACGATTGGCGCGCAACGCAGCGCGAATGTGCATCTGCATGCGGGCGTTTCCGAAGCGGACTTC GTGAAGATGCGCGAGACACGCGACGCCACGCTTCCCATGCCGCGCCTTCTGCTTCCATCGGTGCAAGTCAACATGCGCGC CGGTCATCTGCCCACGCCGGAAGACAACGGCGTGCGTTATCTGAAGCTGCCGTTGGACGTGCTATGA
Upstream 100 bases:
>100_bases TTCCTTACTCCTTCTCGACGCTGCCATCGTGAGTCATCCAACACGCGACACCTGCCCGGCAGCGGCCTGCGCTGTCGTGG AAGACACCCGCTCCGGTCGC
Downstream 100 bases:
>100_bases CGCTCCCGCACCTCGCCTGGTATTGGCCGCTGATTGGTGGGCTGATGATCGGCACCGCCTCTGGCGCGTATTTACTGCTG GTCGGCCGCATCGCCGGCAT
Product: putative metallo-beta-lactamase superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 288; Mature: 287
Protein sequence:
>288_residues MSAPHVATFFDPVTFTASHVVRDPGSSACAIIDSVLDFDMASGRTATGSAEALAHYVRDEALQVQWHLETHAHADHLSAA PWLQQQVGGQLAIGERITAVQQTFGNLFNAGKEFSRDGSQFDHLFADGAAFTIGHLHAVALHVPGHTPACMAYVIGDALF SGDTLFMPDYGTVRCDFPGGSARQLYRSIQRLLKLPDATRVFVCHDYKSAGRAHFAWETTIGAQRSANVHLHAGVSEADF VKMRETRDATLPMPRLLLPSVQVNMRAGHLPTPEDNGVRYLKLPLDVL
Sequences:
>Translated_288_residues MSAPHVATFFDPVTFTASHVVRDPGSSACAIIDSVLDFDMASGRTATGSAEALAHYVRDEALQVQWHLETHAHADHLSAA PWLQQQVGGQLAIGERITAVQQTFGNLFNAGKEFSRDGSQFDHLFADGAAFTIGHLHAVALHVPGHTPACMAYVIGDALF SGDTLFMPDYGTVRCDFPGGSARQLYRSIQRLLKLPDATRVFVCHDYKSAGRAHFAWETTIGAQRSANVHLHAGVSEADF VKMRETRDATLPMPRLLLPSVQVNMRAGHLPTPEDNGVRYLKLPLDVL >Mature_287_residues SAPHVATFFDPVTFTASHVVRDPGSSACAIIDSVLDFDMASGRTATGSAEALAHYVRDEALQVQWHLETHAHADHLSAAP WLQQQVGGQLAIGERITAVQQTFGNLFNAGKEFSRDGSQFDHLFADGAAFTIGHLHAVALHVPGHTPACMAYVIGDALFS GDTLFMPDYGTVRCDFPGGSARQLYRSIQRLLKLPDATRVFVCHDYKSAGRAHFAWETTIGAQRSANVHLHAGVSEADFV KMRETRDATLPMPRLLLPSVQVNMRAGHLPTPEDNGVRYLKLPLDVL
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-B beta-lactamase family [H]
Homologues:
Organism=Homo sapiens, GI41327741, Length=263, Percent_Identity=26.9961977186312, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538952, Length=271, Percent_Identity=24.3542435424354, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI221330176, Length=270, Percent_Identity=28.1481481481481, Blast_Score=104, Evalue=7e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005939 - InterPro: IPR001279 [H]
Pfam domain/function: PF04273 DUF442; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 31353; Mature: 31222
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPHVATFFDPVTFTASHVVRDPGSSACAIIDSVLDFDMASGRTATGSAEALAHYVRDE CCCCCCCHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC ALQVQWHLETHAHADHLSAAPWLQQQVGGQLAIGERITAVQQTFGNLFNAGKEFSRDGSQ EEEEEEEEECCCCCHHCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCHHHCCCCCH FDHLFADGAAFTIGHLHAVALHVPGHTPACMAYVIGDALFSGDTLFMPDYGTVRCDFPGG HHHHHHCCCEEEEECEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCC SARQLYRSIQRLLKLPDATRVFVCHDYKSAGRAHFAWETTIGAQRSANVHLHAGVSEADF HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEECCCCHHHH VKMRETRDATLPMPRLLLPSVQVNMRAGHLPTPEDNGVRYLKLPLDVL HHHHHCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCEEEEECCCCCC >Mature Secondary Structure SAPHVATFFDPVTFTASHVVRDPGSSACAIIDSVLDFDMASGRTATGSAEALAHYVRDE CCCCCCHHHCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC ALQVQWHLETHAHADHLSAAPWLQQQVGGQLAIGERITAVQQTFGNLFNAGKEFSRDGSQ EEEEEEEEECCCCCHHCCCCHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCHHHCCCCCH FDHLFADGAAFTIGHLHAVALHVPGHTPACMAYVIGDALFSGDTLFMPDYGTVRCDFPGG HHHHHHCCCEEEEECEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCEEEEECCCC SARQLYRSIQRLLKLPDATRVFVCHDYKSAGRAHFAWETTIGAQRSANVHLHAGVSEADF HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCEEEECCCCHHHH VKMRETRDATLPMPRLLLPSVQVNMRAGHLPTPEDNGVRYLKLPLDVL HHHHHCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11743193; 11743194 [H]