| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is 78047940
Identifier: 78047940
GI number: 78047940
Start: 2710765
End: 2712960
Strand: Reverse
Name: 78047940
Synonym: XCV2384
Alternate gene names: NA
Gene position: 2712960-2710765 (Counterclockwise)
Preceding gene: 78047941
Following gene: 78047939
Centisome position: 52.39
GC content: 62.75
Gene sequence:
>2196_bases ATGCTCGCAATGGCCAAGAGGCACCTTCTCGAATCCACACATCCTTCCGGCAGGAAGCGCCGCCTATTGATGCTTTCGGT CGCATTGGTGGGAGCGGTATTTTTGATATGGCTGGCGGTGGCCGTGTTCAACACGCGCACTTCCCGTGTCGCAGTGAATG ATGATGGTCTCCCGGTCAGCGGCGCGACCGAGTTGACCCCGCAGCAGCACCAGCTGGTTGAACAGGGCCGCTACGTCGCG CGCTTGGGCGATTGCGTTGCCTGCCATACGTCTGAGCCTTCCAAGCCCATGGCAGGTGGCCTTGCGCTGGAAACGCCTTT CGGCAAGCTCTATTCCACCAATATCACGCCGGACAAGGCCACGGGCATCGGCGGTTACAGCCTGGAGCAGTTTGACCGCG TCATGCGCCTTGGGGTGGCGGCCGATGGTCACAACCTGTATCCGGCCATGCCGTACCCGTCCTACGCGAAGATGACGCCG GACGACATGAAGGCGCTTTATGCCTACTTGATGCACGGCGTCACGCCCGTCGAACAAGCGAATCGGCCTTCGGATATGGG CTTTCCGTTCAACCAGCGCTGGGGGCTGGCGCTTTGGAACGCGGTGTTCCTGGAAGACGAACCCTTCCAGCCTGTGCAGG ACAAGAACGAGGTGTGGAACCGAGGGGCGTACCTCGTGCAGGGGCTAGGCCATTGCGGTGCCTGTCACACGCCTCGCGGC GTTGGCTTCCAGGAGAAGACCATGACCAGCGAGGGCTCCGCCGGCCACCTGTTCCTGGCCGGTGAAACCGTCGAAGGCTG GCGTGCTCTGAGCCTGCGCAACCTCTGGACCCCGGAGGAAACCGCCGAGATGCTCAAGACCGGACGCAACAAGCACGGCA CCGTCTCCGGCAACATGGTGGATGTGGTGCAGCACAGCACCCAGTACATGACCGACGACGACCTGATGGCCATCGGCATC TTTCTGAAATCGTTGCCGCCCGGCGAGGACGACCTACCCATGCAGCTCGCCCAGGGCCCGGAGTCTGGCATCCCACCGTA CCGGACTGGTGGCATGGCCAAACCCGGCGAAGTGCCCGGTGACATCTTCACTACGCGCGGTGGCCTTGGCTACCTGCAAT TCTGTGCCGACTGCCACCGCTCCAACGGCGATGGTGTACCCAATGCGTTCCCGTCGCTGGCCGGCAACAACACCCTGCAA TCGCAGGACCCGGCCACGCTGATCCACATCATGCTGACGGGCTGGCAGGCGCCGGTCACGCAAAGTCATGCACGGCCACT GACGATGCCTTCGTTCGCGCAGTTGAGCGACCAGGAGATCGCCGAAATCCTGAACTTCACACGCCGCGCCTGGGGACGGG CCGACGCTCATGAAATCAGAGCCAGCGAAGTAAGCCGCGCCCGCAAGCACCTTGACGCCACCGCCGACAATCACCGTCCG TTCGAGACACCGCGCCTGGCAGAGATGCTCAAGGAAAAGAACGCGGAGCAACTGGTGTTGGGGGCACGCCTGAACATCGA CACGGCGCGCATGCTGCCGAGCAATGTGGGCAACAAGCTCAACTGCGCCAGTTGCCACCTGAATGCCGGCACGGTGGCCG ACGGCTCGCCCTATGTCGGGGTCTCCGCGTTCTTCCCCAGCTACGCCTCGCGCGCAGGTCGCGTCATCACGCTGGAAGAG CGCATCAACGGATGCTTCCAGCGCTCGATGCACGGCAAGCCATTGCCCATCACCAGCGACGAGATGAAGGCGATGGTCGC CTACTTCGACTGGATGAAGCGAGAAACCAAGCCCGAAGACAAGGTGGAAGGCCGCGGCGTGGGCAAGGTCGATCAAACGC TCATCCCCAACACCGAGAACGGCAAGCGCATCTATGCCGCCCAGTGCGCGCTGTGCCACGGCGCGAACGGGGAAGGTGTC AGGAACGCCAAGGGCGAGATGGTCTATCCACCGCTGTGGGGCGGCGAGTCCTTCAACATCGGCGCCGGCATGGCCCGCAC CTACACAGCGGCGGCCTTCGTCAAGCGGAACATGCCCATCGCATTTGGCACCCATTTCCCACTCGGCCAAGGAGGGCTCA CTGACCAAGAGGCCGTGGACGTGGCCGAATATTTCACCCACATGGATCGCCCGGATTTTGCGCCCAAGGGTAAGGACTGG CCCAACGATAAGAAGCCCGCTGATGCGCGCTATTAA
Upstream 100 bases:
>100_bases GGGATTTATTTTTCAATATAAATCATAAACTTACCGATTGATTTAGATCAGTCAAACAAATTCGGCCAGCACCCATACTT CAGTCATTGGACGTCAATGG
Downstream 100 bases:
>100_bases GGGTGTTGATAGACATATGGGGCTGCACGCACCCTATGGGTCGCATGCAGTCGAAGGCATGCCACGCGCAGCAACCGAGA CCAGGGGAGAATCAGTCCGG
Product: putative cytochrome precursor
Products: NA
Alternate protein names: GA 2-DH cytochrome c subunit; GADH cytochrome c subunit [H]
Number of amino acids: Translated: 731; Mature: 731
Protein sequence:
>731_residues MLAMAKRHLLESTHPSGRKRRLLMLSVALVGAVFLIWLAVAVFNTRTSRVAVNDDGLPVSGATELTPQQHQLVEQGRYVA RLGDCVACHTSEPSKPMAGGLALETPFGKLYSTNITPDKATGIGGYSLEQFDRVMRLGVAADGHNLYPAMPYPSYAKMTP DDMKALYAYLMHGVTPVEQANRPSDMGFPFNQRWGLALWNAVFLEDEPFQPVQDKNEVWNRGAYLVQGLGHCGACHTPRG VGFQEKTMTSEGSAGHLFLAGETVEGWRALSLRNLWTPEETAEMLKTGRNKHGTVSGNMVDVVQHSTQYMTDDDLMAIGI FLKSLPPGEDDLPMQLAQGPESGIPPYRTGGMAKPGEVPGDIFTTRGGLGYLQFCADCHRSNGDGVPNAFPSLAGNNTLQ SQDPATLIHIMLTGWQAPVTQSHARPLTMPSFAQLSDQEIAEILNFTRRAWGRADAHEIRASEVSRARKHLDATADNHRP FETPRLAEMLKEKNAEQLVLGARLNIDTARMLPSNVGNKLNCASCHLNAGTVADGSPYVGVSAFFPSYASRAGRVITLEE RINGCFQRSMHGKPLPITSDEMKAMVAYFDWMKRETKPEDKVEGRGVGKVDQTLIPNTENGKRIYAAQCALCHGANGEGV RNAKGEMVYPPLWGGESFNIGAGMARTYTAAAFVKRNMPIAFGTHFPLGQGGLTDQEAVDVAEYFTHMDRPDFAPKGKDW PNDKKPADARY
Sequences:
>Translated_731_residues MLAMAKRHLLESTHPSGRKRRLLMLSVALVGAVFLIWLAVAVFNTRTSRVAVNDDGLPVSGATELTPQQHQLVEQGRYVA RLGDCVACHTSEPSKPMAGGLALETPFGKLYSTNITPDKATGIGGYSLEQFDRVMRLGVAADGHNLYPAMPYPSYAKMTP DDMKALYAYLMHGVTPVEQANRPSDMGFPFNQRWGLALWNAVFLEDEPFQPVQDKNEVWNRGAYLVQGLGHCGACHTPRG VGFQEKTMTSEGSAGHLFLAGETVEGWRALSLRNLWTPEETAEMLKTGRNKHGTVSGNMVDVVQHSTQYMTDDDLMAIGI FLKSLPPGEDDLPMQLAQGPESGIPPYRTGGMAKPGEVPGDIFTTRGGLGYLQFCADCHRSNGDGVPNAFPSLAGNNTLQ SQDPATLIHIMLTGWQAPVTQSHARPLTMPSFAQLSDQEIAEILNFTRRAWGRADAHEIRASEVSRARKHLDATADNHRP FETPRLAEMLKEKNAEQLVLGARLNIDTARMLPSNVGNKLNCASCHLNAGTVADGSPYVGVSAFFPSYASRAGRVITLEE RINGCFQRSMHGKPLPITSDEMKAMVAYFDWMKRETKPEDKVEGRGVGKVDQTLIPNTENGKRIYAAQCALCHGANGEGV RNAKGEMVYPPLWGGESFNIGAGMARTYTAAAFVKRNMPIAFGTHFPLGQGGLTDQEAVDVAEYFTHMDRPDFAPKGKDW PNDKKPADARY >Mature_731_residues MLAMAKRHLLESTHPSGRKRRLLMLSVALVGAVFLIWLAVAVFNTRTSRVAVNDDGLPVSGATELTPQQHQLVEQGRYVA RLGDCVACHTSEPSKPMAGGLALETPFGKLYSTNITPDKATGIGGYSLEQFDRVMRLGVAADGHNLYPAMPYPSYAKMTP DDMKALYAYLMHGVTPVEQANRPSDMGFPFNQRWGLALWNAVFLEDEPFQPVQDKNEVWNRGAYLVQGLGHCGACHTPRG VGFQEKTMTSEGSAGHLFLAGETVEGWRALSLRNLWTPEETAEMLKTGRNKHGTVSGNMVDVVQHSTQYMTDDDLMAIGI FLKSLPPGEDDLPMQLAQGPESGIPPYRTGGMAKPGEVPGDIFTTRGGLGYLQFCADCHRSNGDGVPNAFPSLAGNNTLQ SQDPATLIHIMLTGWQAPVTQSHARPLTMPSFAQLSDQEIAEILNFTRRAWGRADAHEIRASEVSRARKHLDATADNHRP FETPRLAEMLKEKNAEQLVLGARLNIDTARMLPSNVGNKLNCASCHLNAGTVADGSPYVGVSAFFPSYASRAGRVITLEE RINGCFQRSMHGKPLPITSDEMKAMVAYFDWMKRETKPEDKVEGRGVGKVDQTLIPNTENGKRIYAAQCALCHGANGEGV RNAKGEMVYPPLWGGESFNIGAGMARTYTAAAFVKRNMPIAFGTHFPLGQGGLTDQEAVDVAEYFTHMDRPDFAPKGKDW PNDKKPADARY
Specific function: Part of the heterotrimer that catalyzes the conversion of D-gluconate to 2-dehydro-D-gluconate [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Periplasmic side (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 3 cytochrome c domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009056 - InterPro: IPR003088 - InterPro: IPR008168 - InterPro: IPR014353 [H]
Pfam domain/function: PF00034 Cytochrom_C [H]
EC number: =1.1.99.3 [H]
Molecular weight: Translated: 79907; Mature: 79907
Theoretical pI: Translated: 7.00; Mature: 7.00
Prosite motif: PS51007 CYTC ; PS51008 MULTIHEME_CYTC L=rr
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLAMAKRHLLESTHPSGRKRRLLMLSVALVGAVFLIWLAVAVFNTRTSRVAVNDDGLPVS CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC GATELTPQQHQLVEQGRYVARLGDCVACHTSEPSKPMAGGLALETPFGKLYSTNITPDKA CCCCCCCHHHHHHHCCCHHHHHCCEEEECCCCCCCCCCCCEEEECCCCCEEECCCCCCCC TGIGGYSLEQFDRVMRLGVAADGHNLYPAMPYPSYAKMTPDDMKALYAYLMHGVTPVEQA CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHC NRPSDMGFPFNQRWGLALWNAVFLEDEPFQPVQDKNEVWNRGAYLVQGLGHCGACHTPRG CCCCCCCCCCCCCCCHHHHEEEEECCCCCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCCC VGFQEKTMTSEGSAGHLFLAGETVEGWRALSLRNLWTPEETAEMLKTGRNKHGTVSGNMV CCCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHH DVVQHSTQYMTDDDLMAIGIFLKSLPPGEDDLPMQLAQGPESGIPPYRTGGMAKPGEVPG HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC DIFTTRGGLGYLQFCADCHRSNGDGVPNAFPSLAGNNTLQSQDPATLIHIMLTGWQAPVT CCEECCCCCHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEECCCCCCCC QSHARPLTMPSFAQLSDQEIAEILNFTRRAWGRADAHEIRASEVSRARKHLDATADNHRP CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC FETPRLAEMLKEKNAEQLVLGARLNIDTARMLPSNVGNKLNCASCHLNAGTVADGSPYVG CCCHHHHHHHHHCCCCEEEEEEECCCCHHHHCHHHCCCCCEEEEEECCCCCCCCCCCCCC VSAFFPSYASRAGRVITLEERINGCFQRSMHGKPLPITSDEMKAMVAYFDWMKRETKPED HHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH KVEGRGVGKVDQTLIPNTENGKRIYAAQCALCHGANGEGVRNAKGEMVYPPLWGGESFNI HHCCCCCCCCCHHCCCCCCCCCEEEEEEEHHHCCCCCCCCCCCCCCEECCCCCCCCCCCC GAGMARTYTAAAFVKRNMPIAFGTHFPLGQGGLTDQEAVDVAEYFTHMDRPDFAPKGKDW CCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC PNDKKPADARY CCCCCCCCCCC >Mature Secondary Structure MLAMAKRHLLESTHPSGRKRRLLMLSVALVGAVFLIWLAVAVFNTRTSRVAVNDDGLPVS CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC GATELTPQQHQLVEQGRYVARLGDCVACHTSEPSKPMAGGLALETPFGKLYSTNITPDKA CCCCCCCHHHHHHHCCCHHHHHCCEEEECCCCCCCCCCCCEEEECCCCCEEECCCCCCCC TGIGGYSLEQFDRVMRLGVAADGHNLYPAMPYPSYAKMTPDDMKALYAYLMHGVTPVEQA CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHC NRPSDMGFPFNQRWGLALWNAVFLEDEPFQPVQDKNEVWNRGAYLVQGLGHCGACHTPRG CCCCCCCCCCCCCCCHHHHEEEEECCCCCCCCCCHHHHHHCCHHHHHHCCCCCCCCCCCC VGFQEKTMTSEGSAGHLFLAGETVEGWRALSLRNLWTPEETAEMLKTGRNKHGTVSGNMV CCCHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCHH DVVQHSTQYMTDDDLMAIGIFLKSLPPGEDDLPMQLAQGPESGIPPYRTGGMAKPGEVPG HHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCC DIFTTRGGLGYLQFCADCHRSNGDGVPNAFPSLAGNNTLQSQDPATLIHIMLTGWQAPVT CCEECCCCCHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCEEEEEEECCCCCCCC QSHARPLTMPSFAQLSDQEIAEILNFTRRAWGRADAHEIRASEVSRARKHLDATADNHRP CCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCC FETPRLAEMLKEKNAEQLVLGARLNIDTARMLPSNVGNKLNCASCHLNAGTVADGSPYVG CCCHHHHHHHHHCCCCEEEEEEECCCCHHHHCHHHCCCCCEEEEEECCCCCCCCCCCCCC VSAFFPSYASRAGRVITLEERINGCFQRSMHGKPLPITSDEMKAMVAYFDWMKRETKPED HHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCH KVEGRGVGKVDQTLIPNTENGKRIYAAQCALCHGANGEGVRNAKGEMVYPPLWGGESFNI HHCCCCCCCCCHHCCCCCCCCCEEEEEEEHHHCCCCCCCCCCCCCCEECCCCCCCCCCCC GAGMARTYTAAAFVKRNMPIAFGTHFPLGQGGLTDQEAVDVAEYFTHMDRPDFAPKGKDW CCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC PNDKKPADARY CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9352901 [H]