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The map label for this gene is yddR [H]

Identifier: 78047872

GI number: 78047872

Start: 2648324

End: 2649223

Strand: Reverse

Name: yddR [H]

Synonym: XCV2316

Alternate gene names: 78047872

Gene position: 2649223-2648324 (Counterclockwise)

Preceding gene: 78047873

Following gene: 78047871

Centisome position: 51.16

GC content: 56.78

Gene sequence:

>900_bases
ATGTCCATGAAAGAACTGATACGCAAATATGCAAGCCTGCTCATTGCGGGCTTTATCGCCGCAGGAGCTGCTGCCAGCGC
GTCCGCCGAATCGGCACCAGCGTCCAGTGCTGGAACGAAATCGTTTGTGCTGCAGCAGATAAGGAACGCGACGATCAAGA
TCGACTACGGCGACGTCAGGTTTCTGGTCGATCCGATGCTGGCGAAAAAAGGCTCATATCCCGCGGCACCGGGAAGCTTC
AACAGCGAAATCCGCAACCCTACCGTAGACCTTCCCATACCCCTTGAAAAAGTGATCGACGTGGATGCGGTAATCGTCAC
GCATCTGCACTTCGATCATTGGGACAACGAGGCCAAAGAACGCATCCCGAAAGACATGCCGATCTTTGCGCAGAACGATG
AGGATGCCAGGACGATCCGAGGCTCCGGCTTTCGGGACGTGCGCGTCTTGAATGAGGCAACCGAATTCAAGGGAGTCCGC
CTGATCAAGACAAGCGGCCAGCATGGCAGCGACGCTGCAATGGCCGTCCGCGGGAAACTTCTGGGCACGGTGTCTGGCGT
GGTCTTCCAGCGCCCAGGCTTCAAGTCGCTCTACGTGGCTGGCGATACCGTCTGGAATACCCACGTCCAGGACGCTCTCG
CCACATACCGCCCGGACGTCATCGTCCTGAACGCGGGCTATGTGCGATTCAACGATATCGATGGCGCCATCATCATGGGC
AAAGAGGATCTATATCGAGTGAATCAAGCCGCCCCTGGCGCTTATATCGTGGCGGTGCACTTGGAATCCCTGAACCATGC
GACGCAAAGCCGGCAGGAACTGAAGGATTACATCAAGGAGAAATCGCTCGACCCTCAGCGAGTCCTCGTTCCCGATGATG
GCGAAAGCTACAGCTTCTGA

Upstream 100 bases:

>100_bases
GCTTTCGTTCACTTTTTCGGCTTGGTGGGCCCGGCAAATATCCGGGCTCGCGGCTGTGCAATTCACTTCGCCAAGCCATT
ACTTCAGGAGAACCCTATCC

Downstream 100 bases:

>100_bases
ATGGCCCTTTCACCAGACCGACAGTGGTATCGGAGCAGTCCCGACCCTGGAGATACCCCCCGCATGAAACGACGTCATTT
TCTGATTGCCGCTGCGATGG

Product: putative secreted protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MSMKELIRKYASLLIAGFIAAGAAASASAESAPASSAGTKSFVLQQIRNATIKIDYGDVRFLVDPMLAKKGSYPAAPGSF
NSEIRNPTVDLPIPLEKVIDVDAVIVTHLHFDHWDNEAKERIPKDMPIFAQNDEDARTIRGSGFRDVRVLNEATEFKGVR
LIKTSGQHGSDAAMAVRGKLLGTVSGVVFQRPGFKSLYVAGDTVWNTHVQDALATYRPDVIVLNAGYVRFNDIDGAIIMG
KEDLYRVNQAAPGAYIVAVHLESLNHATQSRQELKDYIKEKSLDPQRVLVPDDGESYSF

Sequences:

>Translated_299_residues
MSMKELIRKYASLLIAGFIAAGAAASASAESAPASSAGTKSFVLQQIRNATIKIDYGDVRFLVDPMLAKKGSYPAAPGSF
NSEIRNPTVDLPIPLEKVIDVDAVIVTHLHFDHWDNEAKERIPKDMPIFAQNDEDARTIRGSGFRDVRVLNEATEFKGVR
LIKTSGQHGSDAAMAVRGKLLGTVSGVVFQRPGFKSLYVAGDTVWNTHVQDALATYRPDVIVLNAGYVRFNDIDGAIIMG
KEDLYRVNQAAPGAYIVAVHLESLNHATQSRQELKDYIKEKSLDPQRVLVPDDGESYSF
>Mature_298_residues
SMKELIRKYASLLIAGFIAAGAAASASAESAPASSAGTKSFVLQQIRNATIKIDYGDVRFLVDPMLAKKGSYPAAPGSFN
SEIRNPTVDLPIPLEKVIDVDAVIVTHLHFDHWDNEAKERIPKDMPIFAQNDEDARTIRGSGFRDVRVLNEATEFKGVRL
IKTSGQHGSDAAMAVRGKLLGTVSGVVFQRPGFKSLYVAGDTVWNTHVQDALATYRPDVIVLNAGYVRFNDIDGAIIMGK
EDLYRVNQAAPGAYIVAVHLESLNHATQSRQELKDYIKEKSLDPQRVLVPDDGESYSF

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 32707; Mature: 32576

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMKELIRKYASLLIAGFIAAGAAASASAESAPASSAGTKSFVLQQIRNATIKIDYGDVR
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCEE
FLVDPMLAKKGSYPAAPGSFNSEIRNPTVDLPIPLEKVIDVDAVIVTHLHFDHWDNEAKE
EECCHHHHCCCCCCCCCCCCCHHHCCCEECCCCCHHHHHCHHHEEEEEEECCCCCCHHHH
RIPKDMPIFAQNDEDARTIRGSGFRDVRVLNEATEFKGVRLIKTSGQHGSDAAMAVRGKL
HCCCCCCEEECCCCCHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHH
LGTVSGVVFQRPGFKSLYVAGDTVWNTHVQDALATYRPDVIVLNAGYVRFNDIDGAIIMG
HHHHHHHEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCEEEEECCCCEEEEC
KEDLYRVNQAAPGAYIVAVHLESLNHATQSRQELKDYIKEKSLDPQRVLVPDDGESYSF
CHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
SMKELIRKYASLLIAGFIAAGAAASASAESAPASSAGTKSFVLQQIRNATIKIDYGDVR
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCEE
FLVDPMLAKKGSYPAAPGSFNSEIRNPTVDLPIPLEKVIDVDAVIVTHLHFDHWDNEAKE
EECCHHHHCCCCCCCCCCCCCHHHCCCEECCCCCHHHHHCHHHEEEEEEECCCCCCHHHH
RIPKDMPIFAQNDEDARTIRGSGFRDVRVLNEATEFKGVRLIKTSGQHGSDAAMAVRGKL
HCCCCCCEEECCCCCHHHCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHH
LGTVSGVVFQRPGFKSLYVAGDTVWNTHVQDALATYRPDVIVLNAGYVRFNDIDGAIIMG
HHHHHHHEEECCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCEEEEECCCCEEEEC
KEDLYRVNQAAPGAYIVAVHLESLNHATQSRQELKDYIKEKSLDPQRVLVPDDGESYSF
CHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]