Click here to switch to the map view.

The map label for this gene is pelL [H]

Identifier: 78047834

GI number: 78047834

Start: 2610788

End: 2612110

Strand: Reverse

Name: pelL [H]

Synonym: XCV2278

Alternate gene names: 78047834

Gene position: 2612110-2610788 (Counterclockwise)

Preceding gene: 78047837

Following gene: 78047833

Centisome position: 50.44

GC content: 63.42

Gene sequence:

>1323_bases
ATGAACCTCTCTCTTCGCACCATCGTGGCGATCGCCGTTGCCGCCTGCGTGCCGCCGTGCACGGCCGTGGCCGCCGACTG
GTACATCGCGCCCACCGGCAACGACGGCAATCCCGGCACTCGCGCCGCCCCCTTTGCCAGCGTGATGGCTGCGCAGGCCG
CCGCGTCCAGTGGCGATACCGTCTACCTGCGCGGCGGCACCTATCGCCTGACCAGCGCCAACATCAGCGTGGTGCGGCAG
CCCTACGCCGTGGTCAACGAGATCACCAAGCCCGGCATCGCCTATGTCAACGTCGCCAACGAGCGGCCGGTGTTCGACTT
CTCTGCGGTGACGCCCACCGGCCTGCGCGTGGCCGCATTCCGGGTGGCCAGCAACAACTGCGTCTTTCGCGGATTCGAGG
TGGTGGGGGTGCGGATCACCATTGCAGACCGCCTGACCCAGTCCGAAGCATTCCGCGTTGACCGCGGCAACGGCAACCTG
TTCGAGAATTTGGCGATCCACGACGGCCAGGCGATCGGCTGGTACCTGGTTTCCGGCAGCGACAACCGGGTACACAACGT
CGATGCCTATAACAACCGCGGACTAAATGCCTTCTCCGATGGAAATATCGACGGTTTCGGCGTGCACCCGACGCTTGCGG
GAAGCAGCGGAAACCTCATCGAAGGCAGCCGCGCATGGTTCAACAGCGACGATGGCTTCGACCTGATCAATGCCGCTGCT
GCAGTCACCCTGCAACGCAACTGGTCGTTCTACAACGGGTACGACAGCGCATTCACCCCGCTGGGCAATGGCGCAGGCTT
CAAGGCAGGCGGCTACGGCCGCAACGGAAGCGATTATCCCAAGCCGGTGCCGCGCCACATCGTGCGGTTCAATCTGGCAG
TGGGCAATCGATCCAACGGCCTCTACGCCAATCACCACATCGGTGGGCAGGAGTGGATCAGCAACACATCGATCAAGAAC
GGCCGCGCCAACTACGACATGCAGTCCACCTTGAGCAACAACCTCACTGACGTGCCGGGATACGACCACCATCTGGCCAA
TAACCTGGGATTCGGAACGCGCATCGAAATGATCAACCTGGGGTCTGCGAGCGAGAACGATATCGGCCGCAATTCGTTCA
ATCTTCCCCTTGTCGTCAGTGCGGGCGATTTCGTCAGCCTCGACGAGCGCCAGCTCATGCGCCCGCGCCAGGCCAACGGC
GACCTACCCATCATCACCTTCGCCACCCTGGCACCGGGCAGCGCGTTGATCGACGCCGGCGCCGATACCGGTGAGGCCTT
CAACGGGCGTGCACCGGACCTGGGAGCATTCGAGGCGCGTTGA

Upstream 100 bases:

>100_bases
GCGCAAACCGGTTCCCGCAGGCTGCGCGACTCGCGGCTCGTGCCACGCCGGGTCAAAGGCGGCACGCAGCCACTGTCATG
CAGTACACCAGGGACATCCG

Downstream 100 bases:

>100_bases
TCCGGACGATGGCGCCAGCCGCCTGGCCGACGGTCAGCGCCATCCTGCCCGGCAGGATTGAGGGTCGGCAGGGATTGATG
CAAAAAACAGCCAAATCTTG

Product: Pectate lyase precursor

Products: NA

Alternate protein names: Pectate transeliminase [H]

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MNLSLRTIVAIAVAACVPPCTAVAADWYIAPTGNDGNPGTRAAPFASVMAAQAAASSGDTVYLRGGTYRLTSANISVVRQ
PYAVVNEITKPGIAYVNVANERPVFDFSAVTPTGLRVAAFRVASNNCVFRGFEVVGVRITIADRLTQSEAFRVDRGNGNL
FENLAIHDGQAIGWYLVSGSDNRVHNVDAYNNRGLNAFSDGNIDGFGVHPTLAGSSGNLIEGSRAWFNSDDGFDLINAAA
AVTLQRNWSFYNGYDSAFTPLGNGAGFKAGGYGRNGSDYPKPVPRHIVRFNLAVGNRSNGLYANHHIGGQEWISNTSIKN
GRANYDMQSTLSNNLTDVPGYDHHLANNLGFGTRIEMINLGSASENDIGRNSFNLPLVVSAGDFVSLDERQLMRPRQANG
DLPIITFATLAPGSALIDAGADTGEAFNGRAPDLGAFEAR

Sequences:

>Translated_440_residues
MNLSLRTIVAIAVAACVPPCTAVAADWYIAPTGNDGNPGTRAAPFASVMAAQAAASSGDTVYLRGGTYRLTSANISVVRQ
PYAVVNEITKPGIAYVNVANERPVFDFSAVTPTGLRVAAFRVASNNCVFRGFEVVGVRITIADRLTQSEAFRVDRGNGNL
FENLAIHDGQAIGWYLVSGSDNRVHNVDAYNNRGLNAFSDGNIDGFGVHPTLAGSSGNLIEGSRAWFNSDDGFDLINAAA
AVTLQRNWSFYNGYDSAFTPLGNGAGFKAGGYGRNGSDYPKPVPRHIVRFNLAVGNRSNGLYANHHIGGQEWISNTSIKN
GRANYDMQSTLSNNLTDVPGYDHHLANNLGFGTRIEMINLGSASENDIGRNSFNLPLVVSAGDFVSLDERQLMRPRQANG
DLPIITFATLAPGSALIDAGADTGEAFNGRAPDLGAFEAR
>Mature_440_residues
MNLSLRTIVAIAVAACVPPCTAVAADWYIAPTGNDGNPGTRAAPFASVMAAQAAASSGDTVYLRGGTYRLTSANISVVRQ
PYAVVNEITKPGIAYVNVANERPVFDFSAVTPTGLRVAAFRVASNNCVFRGFEVVGVRITIADRLTQSEAFRVDRGNGNL
FENLAIHDGQAIGWYLVSGSDNRVHNVDAYNNRGLNAFSDGNIDGFGVHPTLAGSSGNLIEGSRAWFNSDDGFDLINAAA
AVTLQRNWSFYNGYDSAFTPLGNGAGFKAGGYGRNGSDYPKPVPRHIVRFNLAVGNRSNGLYANHHIGGQEWISNTSIKN
GRANYDMQSTLSNNLTDVPGYDHHLANNLGFGTRIEMINLGSASENDIGRNSFNLPLVVSAGDFVSLDERQLMRPRQANG
DLPIITFATLAPGSALIDAGADTGEAFNGRAPDLGAFEAR

Specific function: Presents an endo-cleaving activity on polygalacturonate or partially methylated pectin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: NA

EC number: =4.2.2.2 [H]

Molecular weight: Translated: 46759; Mature: 46759

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSLRTIVAIAVAACVPPCTAVAADWYIAPTGNDGNPGTRAAPFASVMAAQAAASSGDT
CCCCHHHHHHHHHHHHCCCCHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCE
VYLRGGTYRLTSANISVVRQPYAVVNEITKPGIAYVNVANERPVFDFSAVTPTGLRVAAF
EEEECCEEEEEECCEEEEECCHHHHHHHCCCCEEEEEECCCCCCEEECCCCCCCEEEEEE
RVASNNCVFRGFEVVGVRITIADRLTQSEAFRVDRGNGNLFENLAIHDGQAIGWYLVSGS
EEECCCEEEEEEEEEEEEEEEHHHCCCCCCEEEECCCCCEEEEEEEECCCEEEEEEEECC
DNRVHNVDAYNNRGLNAFSDGNIDGFGVHPTLAGSSGNLIEGSRAWFNSDDGFDLINAAA
CCCEEECCCCCCCCCCCCCCCCCCCEECCCEEECCCCCEECCCCCCCCCCCCCHHHHHEE
AVTLQRNWSFYNGYDSAFTPLGNGAGFKAGGYGRNGSDYPKPVPRHIVRFNLAVGNRSNG
EEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
LYANHHIGGQEWISNTSIKNGRANYDMQSTLSNNLTDVPGYDHHLANNLGFGTRIEMINL
EEEECCCCHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEEEEC
GSASENDIGRNSFNLPLVVSAGDFVSLDERQLMRPRQANGDLPIITFATLAPGSALIDAG
CCCCCCCCCCCCCCCEEEEECCCEEECCHHHHCCCCCCCCCEEEEEEEEECCCCEEEECC
ADTGEAFNGRAPDLGAFEAR
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNLSLRTIVAIAVAACVPPCTAVAADWYIAPTGNDGNPGTRAAPFASVMAAQAAASSGDT
CCCCHHHHHHHHHHHHCCCCHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCE
VYLRGGTYRLTSANISVVRQPYAVVNEITKPGIAYVNVANERPVFDFSAVTPTGLRVAAF
EEEECCEEEEEECCEEEEECCHHHHHHHCCCCEEEEEECCCCCCEEECCCCCCCEEEEEE
RVASNNCVFRGFEVVGVRITIADRLTQSEAFRVDRGNGNLFENLAIHDGQAIGWYLVSGS
EEECCCEEEEEEEEEEEEEEEHHHCCCCCCEEEECCCCCEEEEEEEECCCEEEEEEEECC
DNRVHNVDAYNNRGLNAFSDGNIDGFGVHPTLAGSSGNLIEGSRAWFNSDDGFDLINAAA
CCCEEECCCCCCCCCCCCCCCCCCCEECCCEEECCCCCEECCCCCCCCCCCCCHHHHHEE
AVTLQRNWSFYNGYDSAFTPLGNGAGFKAGGYGRNGSDYPKPVPRHIVRFNLAVGNRSNG
EEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
LYANHHIGGQEWISNTSIKNGRANYDMQSTLSNNLTDVPGYDHHLANNLGFGTRIEMINL
EEEECCCCHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEEEEC
GSASENDIGRNSFNLPLVVSAGDFVSLDERQLMRPRQANGDLPIITFATLAPGSALIDAG
CCCCCCCCCCCCCCCEEEEECCCEEECCHHHHCCCCCCCCCEEEEEEEEECCCCEEEECC
ADTGEAFNGRAPDLGAFEAR
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8577252 [H]