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The map label for this gene is xerD [H]

Identifier: 78047830

GI number: 78047830

Start: 2606817

End: 2608091

Strand: Reverse

Name: xerD [H]

Synonym: XCV2274

Alternate gene names: 78047830

Gene position: 2608091-2606817 (Counterclockwise)

Preceding gene: 78047832

Following gene: 78047829

Centisome position: 50.36

GC content: 66.35

Gene sequence:

>1275_bases
ATGATCAGCGTTGCGCAGTACCTGGAAGCCGCCACCCGCCCCAACACCGAACGCGCTTACGCCGCGGCGACCCGCCATTT
CGAGGTCGAATGGGGCGGCCACCTGCCGGCCACCGCCGACAACGTGGCGCGCTACCTCGCCGCCTACGCTGGCCAGTTGG
CGATCAACACACTCAAACACCGGTTGGCGGCGTTGGCGCAGTGGCACCGGGTGCACGGCTTTGCCGACCCGACCCGGGCA
CCGGTGGTGCGCCAAGTGCTCAAGGGCATCCAGACCTTGCATCCGAGTGTCGAAAAACGCGCCACGCCCCTGCAGCTCAC
TCAACTGGGCCAGGTCACGACATGGCTGGAAGACGCTGCGGCCGCAGCCCGGTCTCGCGGCGATCGTGCCTCGGAGCTGC
GGCATCTGCGCGATCGTGCCTTTCTACTGCTGGGCTTCTGGCGCGGCTTCCGAGGCGATGAACTGGCCCGCCTACAGGTA
GACCACCTGCGCCTCGTGCCAGGCGAAGGCATGACCTGCTTCCTGCCGCACAGCAAGGGTGATCGCCGACACGCCGGTAC
GACCTACAAGGTCCCTGCGCTGTCGCGATGGTGCCCGGTAGCATCGACTTCTAGCTGGATCGCTGCAGCCGCGTTGACCG
ATGGCCCGGTGTTCCGTGCGATCAACCAGTGGGGCGGTGTCGCCGACACTGCCTTGCACCCCAACAGCCTGGTGCCGCTG
CTGCGGCGCATCTTCGGTGAGGCCGGCTTGGCGTCACCGAATACCTACAGTGGGCATTCGCTGCGGCGCGGCTTCGCCGG
CTGGGCCAACGCCAACGGCTGGGACGTCAAGAGCTTGATGGAATACGTCGGCTGGCGCGACGTGCACTCGGCGATGCGTT
ACCTCGACGGCGGCGATGCGTTTGCGCGCGAACGCATCGAAGCGAGTCTGCCGCCGATCGTCGCGCCATTGCTGTCGTTG
CCGACACAGGCCACCGCCGTCGAGCCGACCACGGTGCTCGAAGCCCAACTGACATTGACACCCCTTACCCCGCGTGGGCG
CGGGGCGAAAAAAACGCACCGGCTGATCGAAACGCTGTGCCTACAGCCACACGGTGCGCAGCGACTAGAGCGTGACGGCA
GCCGCTATCGTCTCACCGTTGCCGCTGCCGACGAGGCGGCACTGGAAGAAACCATCGCGATACTGCTCGACGATATGCAC
CGCATCGCCGACAACCACCACTGTTTCCTCGCCATCGCCCTGCATGATGCGGCGGGCCACCGCCACTGGGACTGA

Upstream 100 bases:

>100_bases
GCGGGATAATCTAAGATTATCCCGCCTTATGCTGGTTTTTCGGCTAAGCTCGCACCCGGACCGGTACACCCCCGGCCCAT
CTGGCAACTGAGAGGTGCCA

Downstream 100 bases:

>100_bases
CCCGGCCTATGACGACGTTGCACGAAACCGCCTATCCGCGTCTCAAGCCAGATCCTACCGCCAAAGAACTCCAGGATGTC
TACACGCCGACCGAGGCCGA

Product: putative integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MISVAQYLEAATRPNTERAYAAATRHFEVEWGGHLPATADNVARYLAAYAGQLAINTLKHRLAALAQWHRVHGFADPTRA
PVVRQVLKGIQTLHPSVEKRATPLQLTQLGQVTTWLEDAAAAARSRGDRASELRHLRDRAFLLLGFWRGFRGDELARLQV
DHLRLVPGEGMTCFLPHSKGDRRHAGTTYKVPALSRWCPVASTSSWIAAAALTDGPVFRAINQWGGVADTALHPNSLVPL
LRRIFGEAGLASPNTYSGHSLRRGFAGWANANGWDVKSLMEYVGWRDVHSAMRYLDGGDAFARERIEASLPPIVAPLLSL
PTQATAVEPTTVLEAQLTLTPLTPRGRGAKKTHRLIETLCLQPHGAQRLERDGSRYRLTVAAADEAALEETIAILLDDMH
RIADNHHCFLAIALHDAAGHRHWD

Sequences:

>Translated_424_residues
MISVAQYLEAATRPNTERAYAAATRHFEVEWGGHLPATADNVARYLAAYAGQLAINTLKHRLAALAQWHRVHGFADPTRA
PVVRQVLKGIQTLHPSVEKRATPLQLTQLGQVTTWLEDAAAAARSRGDRASELRHLRDRAFLLLGFWRGFRGDELARLQV
DHLRLVPGEGMTCFLPHSKGDRRHAGTTYKVPALSRWCPVASTSSWIAAAALTDGPVFRAINQWGGVADTALHPNSLVPL
LRRIFGEAGLASPNTYSGHSLRRGFAGWANANGWDVKSLMEYVGWRDVHSAMRYLDGGDAFARERIEASLPPIVAPLLSL
PTQATAVEPTTVLEAQLTLTPLTPRGRGAKKTHRLIETLCLQPHGAQRLERDGSRYRLTVAAADEAALEETIAILLDDMH
RIADNHHCFLAIALHDAAGHRHWD
>Mature_424_residues
MISVAQYLEAATRPNTERAYAAATRHFEVEWGGHLPATADNVARYLAAYAGQLAINTLKHRLAALAQWHRVHGFADPTRA
PVVRQVLKGIQTLHPSVEKRATPLQLTQLGQVTTWLEDAAAAARSRGDRASELRHLRDRAFLLLGFWRGFRGDELARLQV
DHLRLVPGEGMTCFLPHSKGDRRHAGTTYKVPALSRWCPVASTSSWIAAAALTDGPVFRAINQWGGVADTALHPNSLVPL
LRRIFGEAGLASPNTYSGHSLRRGFAGWANANGWDVKSLMEYVGWRDVHSAMRYLDGGDAFARERIEASLPPIVAPLLSL
PTQATAVEPTTVLEAQLTLTPLTPRGRGAKKTHRLIETLCLQPHGAQRLERDGSRYRLTVAAADEAALEETIAILLDDMH
RIADNHHCFLAIALHDAAGHRHWD

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46672; Mature: 46672

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVAQYLEAATRPNTERAYAAATRHFEVEWGGHLPATADNVARYLAAYAGQLAINTLKH
CCCHHHHHHHHCCCCCHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RLAALAQWHRVHGFADPTRAPVVRQVLKGIQTLHPSVEKRATPLQLTQLGQVTTWLEDAA
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHH
AAARSRGDRASELRHLRDRAFLLLGFWRGFRGDELARLQVDHLRLVPGEGMTCFLPHSKG
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEECCCCCEEEECCCCC
DRRHAGTTYKVPALSRWCPVASTSSWIAAAALTDGPVFRAINQWGGVADTALHPNSLVPL
CCCCCCCEEECCCHHHCCCCCCCCCHHEEHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHH
LRRIFGEAGLASPNTYSGHSLRRGFAGWANANGWDVKSLMEYVGWRDVHSAMRYLDGGDA
HHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHH
FARERIEASLPPIVAPLLSLPTQATAVEPTTVLEAQLTLTPLTPRGRGAKKTHRLIETLC
HHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
LQPHGAQRLERDGSRYRLTVAAADEAALEETIAILLDDMHRIADNHHCFLAIALHDAAGH
CCCCCHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
RHWD
CCCC
>Mature Secondary Structure
MISVAQYLEAATRPNTERAYAAATRHFEVEWGGHLPATADNVARYLAAYAGQLAINTLKH
CCCHHHHHHHHCCCCCHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RLAALAQWHRVHGFADPTRAPVVRQVLKGIQTLHPSVEKRATPLQLTQLGQVTTWLEDAA
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHH
AAARSRGDRASELRHLRDRAFLLLGFWRGFRGDELARLQVDHLRLVPGEGMTCFLPHSKG
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEEECCCCCEEEECCCCC
DRRHAGTTYKVPALSRWCPVASTSSWIAAAALTDGPVFRAINQWGGVADTALHPNSLVPL
CCCCCCCEEECCCHHHCCCCCCCCCHHEEHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHH
LRRIFGEAGLASPNTYSGHSLRRGFAGWANANGWDVKSLMEYVGWRDVHSAMRYLDGGDA
HHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCHH
FARERIEASLPPIVAPLLSLPTQATAVEPTTVLEAQLTLTPLTPRGRGAKKTHRLIETLC
HHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHH
LQPHGAQRLERDGSRYRLTVAAADEAALEETIAILLDDMHRIADNHHCFLAIALHDAAGH
CCCCCHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCC
RHWD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]