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The map label for this gene is liaR [H]

Identifier: 78047743

GI number: 78047743

Start: 2515120

End: 2515761

Strand: Reverse

Name: liaR [H]

Synonym: XCV2187

Alternate gene names: 78047743

Gene position: 2515761-2515120 (Counterclockwise)

Preceding gene: 78047744

Following gene: 78047742

Centisome position: 48.58

GC content: 67.91

Gene sequence:

>642_bases
ATGGCTGACATGGCCCGACCAACGGGGGTGCTGGTGGTAGACGACCATCCGCTGCTGCGCGATGGGCTCAGTGCCATGCT
CGCCGCCGAACACGACATGCGCGTGGTCGGCGAAGCGGAAGACGGCGAGCAGGCAGTGGCCTGCTACATCCGCCTGCGCC
CGGACGTGGTGTTGATGGATCTGCAGATGCCGCGCGTGGACGGGGTCGAGGCCATCCAGCGCATCCGCCAGGTCGACTCC
GCCGCCAAGGTCATCGTGCTGACCACCTATACCGGCGACGTGCGCGCGGTGCGCGCCCTGCAGGCAGGCGCCTGTGGCTA
CCTGCTCAAGAGCGCGCTGCGCCGCGAGCTGGTCGACACCATCCGCGACGTGCGCCGGGGCCAGCGCCGGCACGTGCCGG
CCTCGGTTGCCGAAAACATCGCCGCCCATGTGCTCGACGATGCCCTGTCCGCGCGCGAGACCGAAGTGCTGAACCTGGTC
GCCACCGGCTGCTCCAACAAGCAAATCGGCAGTGCCTTGAGCATCTCCGAAGAAACCGTCAAGGCCCATATGAAGAACAT
CCTGGGCAAGCTCGGCGTGCGCGATCGCACCCATGCGGTCACCGTCGCGCTGCGGCGGGGGATCCTGTCGCTGGAGACCT
GA

Upstream 100 bases:

>100_bases
GGCACCGAAATCCAGATCACCCTGGCCGCCCGTGCCGCCTACCTGCGCGCCAAGCGGTGGTGGTGGCCATTCCACACCGC
ACGACCCACGGAGAGTTCCA

Downstream 100 bases:

>100_bases
GCGGCGGCTCGCCCATCCTGGGCGCAGCCAGCGGCGGCTTTTGCTACGCGGTCGACCATTCTTGAACGCGAGGCGACACG
CGCGATAGCTCCGCGCGCTC

Product: two-component system LuxR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MADMARPTGVLVVDDHPLLRDGLSAMLAAEHDMRVVGEAEDGEQAVACYIRLRPDVVLMDLQMPRVDGVEAIQRIRQVDS
AAKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVDTIRDVRRGQRRHVPASVAENIAAHVLDDALSARETEVLNLV
ATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRRGILSLET

Sequences:

>Translated_213_residues
MADMARPTGVLVVDDHPLLRDGLSAMLAAEHDMRVVGEAEDGEQAVACYIRLRPDVVLMDLQMPRVDGVEAIQRIRQVDS
AAKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVDTIRDVRRGQRRHVPASVAENIAAHVLDDALSARETEVLNLV
ATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRRGILSLET
>Mature_212_residues
ADMARPTGVLVVDDHPLLRDGLSAMLAAEHDMRVVGEAEDGEQAVACYIRLRPDVVLMDLQMPRVDGVEAIQRIRQVDSA
AKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVDTIRDVRRGQRRHVPASVAENIAAHVLDDALSARETEVLNLVA
TGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRRGILSLET

Specific function: Member of the two-component regulatory system liaS/liaR probably involved in response to a subset of cell wall-active antibiotics that interfere with the lipid II cycle in the cytoplasmic membrane (bacitracin, nisin, ramoplanin and vancomycin). Seems also

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=208, Percent_Identity=37.5, Blast_Score=120, Evalue=5e-29,
Organism=Escherichia coli, GI1788222, Length=213, Percent_Identity=33.8028169014084, Blast_Score=117, Evalue=7e-28,
Organism=Escherichia coli, GI1786747, Length=195, Percent_Identity=31.2820512820513, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787473, Length=186, Percent_Identity=34.9462365591398, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1790102, Length=186, Percent_Identity=31.1827956989247, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788712, Length=202, Percent_Identity=24.2574257425743, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI87082052, Length=133, Percent_Identity=31.5789473684211, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788546, Length=194, Percent_Identity=29.8969072164948, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788550, Length=101, Percent_Identity=35.6435643564356, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23119; Mature: 22988

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADMARPTGVLVVDDHPLLRDGLSAMLAAEHDMRVVGEAEDGEQAVACYIRLRPDVVLMD
CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEEEECCCEEEEE
LQMPRVDGVEAIQRIRQVDSAAKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVDT
CCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
IRDVRRGQRRHVPASVAENIAAHVLDDALSARETEVLNLVATGCSNKQIGSALSISEETV
HHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
KAHMKNILGKLGVRDRTHAVTVALRRGILSLET
HHHHHHHHHHCCCCCHHHHHHHHHHHCHHHCCC
>Mature Secondary Structure 
ADMARPTGVLVVDDHPLLRDGLSAMLAAEHDMRVVGEAEDGEQAVACYIRLRPDVVLMD
CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEEEEECCCEEEEE
LQMPRVDGVEAIQRIRQVDSAAKVIVLTTYTGDVRAVRALQAGACGYLLKSALRRELVDT
CCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHH
IRDVRRGQRRHVPASVAENIAAHVLDDALSARETEVLNLVATGCSNKQIGSALSISEETV
HHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
KAHMKNILGKLGVRDRTHAVTVALRRGILSLET
HHHHHHHHHHCCCCCHHHHHHHHHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]