Click here to switch to the map view.

The map label for this gene is 78047404

Identifier: 78047404

GI number: 78047404

Start: 2083402

End: 2084859

Strand: Reverse

Name: 78047404

Synonym: XCV1848

Alternate gene names: NA

Gene position: 2084859-2083402 (Counterclockwise)

Preceding gene: 78047405

Following gene: 78047403

Centisome position: 40.26

GC content: 60.36

Gene sequence:

>1458_bases
GTGAGCAAAGCCAAAACAGCCGCCAAGCCTGGGCGCACCAAGACCTTCAGCGGCACGCTCCCACGCGGCATCAAGGTCTT
CCAGGCCGTTAGCCCGGTGGCGGGAGTGACGCTCAGGACGGATGGGCAACTCAGGTGGGAGGCGCGCATCCGAAGGTCCC
TCAACGGGCAAGCCTTGAAGTTCCCGCTGGTGCGCTACCCCATCGACCCGAAGGCGTCCCCGAATACCGAGCATCACATC
GATGCCGCGCGACTCATGGCCGAGGCCTATGTCCGCCGAGAGCATGCCTCCTTGGAGCTTCGGCAGACACCGTATGCCCA
CACTTCCGAGGCCTGGACCTTCGGGGATCTACTGCGCCGGTTTGTCCAAGAAATCGATGATGGGCTCATCAAGCACGCGT
CGGTCAGAACCGACCACTCCAATGCCTATCTCTTCTTGGGAGGCGGCAAAGGTCTTGGGTTGAGCCAGACCGGCATGCCC
CACCTCACCCGCAAGCTGGCCAAGGATTTGACTCAGGATGACTTCCTGGGGCGCCATGCCAGCTCGTTCGTGAACTCATA
CGTCAAGGTCAAGCGAGACGGCACCACGCTCCCTATGGCCCAGGGCAGCAAAAAGCGAGCCCTGACCACGATCCGAAACC
TCTTCCGGATTGCCCACGAAAACTGGCAGATTGATCTGCGCTCGCCGATCAAGAGCTTGAAATCGCTCAATTCAGATGAC
GCGCGCGACCGGACGCTCACCGAGGAGGAATGGAACGCCATCGTTGCGCAGCTTGATGCTGGGCGGACCGACCAGGCAAC
GGCCGATGTCATTCGCTTTGCGCGTATGACCGCAGCCCGCCGCTCCGAATGCGTCAAGCTTGATTGGGCGGACATCAACT
TCAAGAAGAAAACGGCGCGACTTCGCGAAACCAAGGCCAAAAACGGCAAATACAACGAGCGCGTGATCCCGTTGACCTCA
GAGCCCATGGCCTTGATCGCCACGCGCTTCGAGGCCAGCGAAACAAAGAAGGGAGCGGTCTTTGTGACCTCGCGCGGGAA
GCGCATTCGAGCAGACACCGTCACGCAAGCTTGGGATCGGGTCCGTGAGCAAGTAGCCGAGAAGCTAGGAGACCCAGAGA
TTTTGACCGCGCGCATGCACGACCTTCGCCACACGCGCATCACGGAAATGGGACATCACCTCAACCCAGCGGAAGCAGCC
AGGATCTCAGGCCACAAGGATCTGAAAACCTTCATGCGCTACTTCAACCCGGATCCCGTGGCACTGGGCAAAAAACTTGA
ACAGCTTGAACGCCAGGGCGGCGCAGGCACCGCTGTGGACGAGGTGGTAAAGCAGTTGTTGAGGCTGAGTCCCGAGGACA
TGGCCTCAGCTGTGGCGCTTGCTTTCCAAGCGCAAGCCAAAGCTTCATCGCGCGCACCAACTGCGTGCGCAGCTGGTCCC
ACGCAATTGCCTGCCTAG

Upstream 100 bases:

>100_bases
CCCCGGCTGGGTTCGAACCAGCAACCTCGTCCTTAGGAGGGACGCGCGCTATCCAATTGTGCCACGGGGCCATCTGTCTA
AGGATACAGGGAGACGCTAA

Downstream 100 bases:

>100_bases
AAAAATAACAAAAATAAATACAAAAATCTACCAATAACCAATATCTTGACTTAAAATTAAATAATGTTATTTATTGATTT
TATTGGAAATTTCTGAAATG

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MSKAKTAAKPGRTKTFSGTLPRGIKVFQAVSPVAGVTLRTDGQLRWEARIRRSLNGQALKFPLVRYPIDPKASPNTEHHI
DAARLMAEAYVRREHASLELRQTPYAHTSEAWTFGDLLRRFVQEIDDGLIKHASVRTDHSNAYLFLGGGKGLGLSQTGMP
HLTRKLAKDLTQDDFLGRHASSFVNSYVKVKRDGTTLPMAQGSKKRALTTIRNLFRIAHENWQIDLRSPIKSLKSLNSDD
ARDRTLTEEEWNAIVAQLDAGRTDQATADVIRFARMTAARRSECVKLDWADINFKKKTARLRETKAKNGKYNERVIPLTS
EPMALIATRFEASETKKGAVFVTSRGKRIRADTVTQAWDRVREQVAEKLGDPEILTARMHDLRHTRITEMGHHLNPAEAA
RISGHKDLKTFMRYFNPDPVALGKKLEQLERQGGAGTAVDEVVKQLLRLSPEDMASAVALAFQAQAKASSRAPTACAAGP
TQLPA

Sequences:

>Translated_485_residues
MSKAKTAAKPGRTKTFSGTLPRGIKVFQAVSPVAGVTLRTDGQLRWEARIRRSLNGQALKFPLVRYPIDPKASPNTEHHI
DAARLMAEAYVRREHASLELRQTPYAHTSEAWTFGDLLRRFVQEIDDGLIKHASVRTDHSNAYLFLGGGKGLGLSQTGMP
HLTRKLAKDLTQDDFLGRHASSFVNSYVKVKRDGTTLPMAQGSKKRALTTIRNLFRIAHENWQIDLRSPIKSLKSLNSDD
ARDRTLTEEEWNAIVAQLDAGRTDQATADVIRFARMTAARRSECVKLDWADINFKKKTARLRETKAKNGKYNERVIPLTS
EPMALIATRFEASETKKGAVFVTSRGKRIRADTVTQAWDRVREQVAEKLGDPEILTARMHDLRHTRITEMGHHLNPAEAA
RISGHKDLKTFMRYFNPDPVALGKKLEQLERQGGAGTAVDEVVKQLLRLSPEDMASAVALAFQAQAKASSRAPTACAAGP
TQLPA
>Mature_484_residues
SKAKTAAKPGRTKTFSGTLPRGIKVFQAVSPVAGVTLRTDGQLRWEARIRRSLNGQALKFPLVRYPIDPKASPNTEHHID
AARLMAEAYVRREHASLELRQTPYAHTSEAWTFGDLLRRFVQEIDDGLIKHASVRTDHSNAYLFLGGGKGLGLSQTGMPH
LTRKLAKDLTQDDFLGRHASSFVNSYVKVKRDGTTLPMAQGSKKRALTTIRNLFRIAHENWQIDLRSPIKSLKSLNSDDA
RDRTLTEEEWNAIVAQLDAGRTDQATADVIRFARMTAARRSECVKLDWADINFKKKTARLRETKAKNGKYNERVIPLTSE
PMALIATRFEASETKKGAVFVTSRGKRIRADTVTQAWDRVREQVAEKLGDPEILTARMHDLRHTRITEMGHHLNPAEAAR
ISGHKDLKTFMRYFNPDPVALGKKLEQLERQGGAGTAVDEVVKQLLRLSPEDMASAVALAFQAQAKASSRAPTACAAGPT
QLPA

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 53983; Mature: 53852

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKAKTAAKPGRTKTFSGTLPRGIKVFQAVSPVAGVTLRTDGQLRWEARIRRSLNGQALK
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCEEEECCCCCHHHHHHHHCCCCCEEE
FPLVRYPIDPKASPNTEHHIDAARLMAEAYVRREHASLELRQTPYAHTSEAWTFGDLLRR
CCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHH
FVQEIDDGLIKHASVRTDHSNAYLFLGGGKGLGLSQTGMPHLTRKLAKDLTQDDFLGRHA
HHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHH
SSFVNSYVKVKRDGTTLPMAQGSKKRALTTIRNLFRIAHENWQIDLRSPIKSLKSLNSDD
HHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCC
ARDRTLTEEEWNAIVAQLDAGRTDQATADVIRFARMTAARRSECVKLDWADINFKKKTAR
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH
LRETKAKNGKYNERVIPLTSEPMALIATRFEASETKKGAVFVTSRGKRIRADTVTQAWDR
HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCEECHHHHHHHHHH
VREQVAEKLGDPEILTARMHDLRHTRITEMGHHLNPAEAARISGHKDLKTFMRYFNPDPV
HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCCHH
ALGKKLEQLERQGGAGTAVDEVVKQLLRLSPEDMASAVALAFQAQAKASSRAPTACAAGP
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TQLPA
CCCCC
>Mature Secondary Structure 
SKAKTAAKPGRTKTFSGTLPRGIKVFQAVSPVAGVTLRTDGQLRWEARIRRSLNGQALK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCEEEECCCCCHHHHHHHHCCCCCEEE
FPLVRYPIDPKASPNTEHHIDAARLMAEAYVRREHASLELRQTPYAHTSEAWTFGDLLRR
CCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHH
FVQEIDDGLIKHASVRTDHSNAYLFLGGGKGLGLSQTGMPHLTRKLAKDLTQDDFLGRHA
HHHHHHHHHHHHHHEEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHH
SSFVNSYVKVKRDGTTLPMAQGSKKRALTTIRNLFRIAHENWQIDLRSPIKSLKSLNSDD
HHHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCCCC
ARDRTLTEEEWNAIVAQLDAGRTDQATADVIRFARMTAARRSECVKLDWADINFKKKTAR
CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH
LRETKAKNGKYNERVIPLTSEPMALIATRFEASETKKGAVFVTSRGKRIRADTVTQAWDR
HHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCEECHHHHHHHHHH
VREQVAEKLGDPEILTARMHDLRHTRITEMGHHLNPAEAARISGHKDLKTFMRYFNPDPV
HHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCCHH
ALGKKLEQLERQGGAGTAVDEVVKQLLRLSPEDMASAVALAFQAQAKASSRAPTACAAGP
HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TQLPA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]