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The map label for this gene is cph2 [H]

Identifier: 78047381

GI number: 78047381

Start: 2060900

End: 2062900

Strand: Reverse

Name: cph2 [H]

Synonym: XCV1825

Alternate gene names: 78047381

Gene position: 2062900-2060900 (Counterclockwise)

Preceding gene: 78047383

Following gene: 78047378

Centisome position: 39.84

GC content: 66.52

Gene sequence:

>2001_bases
ATGACCTTGGAATCGCGTGCGCCGCACGTCTGGCGCGGACACGGCACTGTTCATGCGTCCCAATGCGGCCTGGGCCGCGT
GCTGCAACTGAACGGCGCCAATCATCGCCAATCAAGGGATCACGCTTCAGGCCGATACGAGCGCATGCCTTCCCTGCCTG
CCTCTGTCGCGTCTCTTCTTCCGCCCACGCTCGACGAGTCCACCCGGCTCGAGGTGCTGCGCGGCCTGTGCCTGCTGGAT
TCGCCGCCAGACCCGGTGTTCGACACCGTGGCCGCCATGGCCGCGCGCAGCCTGGACGCGGAAATTGCGTTGGTATCGCT
GGTGGACGAGCACCGCCAGTGGTTCAAGGCACGCATTGGCCTGGAAGCGCGCGAAACGCCGCGGAGTCAGGCGTTCTGCG
CGCATGCGATCCGCTCGGACGAAGTGATGGTGGTGCCGGATGCGCGGCTGGATCCGCGCTTTTGCGACAACCCGCTGGTG
ATGGGGCCGCCGTTCATTCGCTTCTATGCCGGCGCACCGCTGAAGCTGCGCGATGGCCATAGCATCGGCACCTTGTGCGT
GATCGGCACCAGCCCGCGCCCCGGGCTGGATGCAGCAGCGATCACGCAGCTGGAAGGCCTGCGCGACCTGGCCGTGCTGC
GCGTGGAAAACCTGCGCAGCACCACCTACCGCGATGGTCCGACCGGGCTGCCCAACCGCGCGCGCTTTAGCGAAGACCTG
GATACCTGGCTGTCGCAACGCGACACTGCACCGGCCACCACGGCGGTGGCCATCGATGTCTGCGGCAGCGATTATTTCCG
CGATATGGTCAAGGCGCTGGGCTGGGAATACGCAGACGGCTACGTCGCCCTGGCACAGCGTCGCCTTGCCGCCTATCTGC
CCGGCGGCACCCTGTTGTATCGGTTGGACCCGACGACCTTCGGCTTCCTGGCGCAGGCGGAAGGCCAGCGTCTGGCCACG
CTATGCACCAAGGTCGCCAAGGCGTTCACCGAGCCCTTGGAACATCAGGGCATTCCGCACACCGCGGTGGCTTCGATCGG
CGCGGTCTCGCTGCAGTCCAGCTACGGCGCCGCCGATACCATCCGCTCGCTGACCACCTCGGTGGATATTGCGCGCGAGC
GCTGCCTGCCGTGGAGCCTGTACGAGCGCAAGCACGATGTTGCCCAGCGCAATACCTTCCGCCTGCTCGCCGCCCTGCCC
GCGGCCCTGGACAGCGCCAGCCAGCTGCGCCTGCACTTTCAACCGCGCGTGGATCTGCACGACCACCGCTGCGTCGGCGT
GGAAGCCTTGCTGCGCTGGCAGCACCCGATGATCGGCCCGGTGGTGCCGTCGGATTTCATTCCGATGGCCGAGAAAACCG
CGCTGATCAACCGCATTACCGCCTGGGTCATCGACAACGGCATCGCGCAGGCAGCGCGCTGGCAGCAGCAAGGCCTGGAC
TTCAACCTGGCCCTGAACGTGTCGGCCGCCGATCTGGATCGCCCCGGCTTTGCCGGCCTGCTGCGGCGCGGCCTGGATCG
TCACAAGCTGGACCCGCGCCGGCTGGAAATCGAATTCACCGAAAGCGCGATGATTCGCCACCCCGACCATCTGGCCGAAC
AACTGGCCACCATTGCAGCGCTGGGCGTGCATATCGCCATCGACGACTTCGGCACCGGCTACAGCAATTTCAGCTATCTC
AAGCAGCTGCCGGCCAGTTCGTTGAAGATCGATCAATCCTTCATCCGTTCGCTGCCGGACAGCCGCACCGACCGCACCCT
GGTGCCGGCGATGATCCAGCTTGGCCACAGTCTGGGCCAGCGCGTGGTGGCCGAAGGCATCGAATCGGCGGAAGCGTACG
CGCAATTGCGCGCCTGGGGCTGCGACGAAGGCCAGGGCTACTGGATCGCCAAACCGATGCCGGCCGCCGCGCTGGAAACC
TGGCTGGAAACGCCGTGGCACGAGCAACATGCCGCGCCGGTCAACCTGCTTGCCGCCAGCTTGGCCGCGGCGCGCGTCTA
G

Upstream 100 bases:

>100_bases
TTTAGGCGCTGCCACCGGACGACACCTGCGCCATGCGTCAGTGTTAGACACGCATTCCAGCCCCGGCAGACGGCGCACGG
CCTGCGACAGCGCCGCGCAG

Downstream 100 bases:

>100_bases
GCGCAGCCAGCACACCAACCGCGTCCACCACTCGGCGGCGCAGGCGGTACTTGAGTGGCATCTGCCACGCGGGCGCAGTG
GCTGCTGCGGGCCATCCAAA

Product: putative phosphodiesterase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 666; Mature: 665

Protein sequence:

>666_residues
MTLESRAPHVWRGHGTVHASQCGLGRVLQLNGANHRQSRDHASGRYERMPSLPASVASLLPPTLDESTRLEVLRGLCLLD
SPPDPVFDTVAAMAARSLDAEIALVSLVDEHRQWFKARIGLEARETPRSQAFCAHAIRSDEVMVVPDARLDPRFCDNPLV
MGPPFIRFYAGAPLKLRDGHSIGTLCVIGTSPRPGLDAAAITQLEGLRDLAVLRVENLRSTTYRDGPTGLPNRARFSEDL
DTWLSQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRLAAYLPGGTLLYRLDPTTFGFLAQAEGQRLAT
LCTKVAKAFTEPLEHQGIPHTAVASIGAVSLQSSYGAADTIRSLTTSVDIARERCLPWSLYERKHDVAQRNTFRLLAALP
AALDSASQLRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVVPSDFIPMAEKTALINRITAWVIDNGIAQAARWQQQGLD
FNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPDHLAEQLATIAALGVHIAIDDFGTGYSNFSYL
KQLPASSLKIDQSFIRSLPDSRTDRTLVPAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALET
WLETPWHEQHAAPVNLLAASLAAARV

Sequences:

>Translated_666_residues
MTLESRAPHVWRGHGTVHASQCGLGRVLQLNGANHRQSRDHASGRYERMPSLPASVASLLPPTLDESTRLEVLRGLCLLD
SPPDPVFDTVAAMAARSLDAEIALVSLVDEHRQWFKARIGLEARETPRSQAFCAHAIRSDEVMVVPDARLDPRFCDNPLV
MGPPFIRFYAGAPLKLRDGHSIGTLCVIGTSPRPGLDAAAITQLEGLRDLAVLRVENLRSTTYRDGPTGLPNRARFSEDL
DTWLSQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRLAAYLPGGTLLYRLDPTTFGFLAQAEGQRLAT
LCTKVAKAFTEPLEHQGIPHTAVASIGAVSLQSSYGAADTIRSLTTSVDIARERCLPWSLYERKHDVAQRNTFRLLAALP
AALDSASQLRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVVPSDFIPMAEKTALINRITAWVIDNGIAQAARWQQQGLD
FNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPDHLAEQLATIAALGVHIAIDDFGTGYSNFSYL
KQLPASSLKIDQSFIRSLPDSRTDRTLVPAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALET
WLETPWHEQHAAPVNLLAASLAAARV
>Mature_665_residues
TLESRAPHVWRGHGTVHASQCGLGRVLQLNGANHRQSRDHASGRYERMPSLPASVASLLPPTLDESTRLEVLRGLCLLDS
PPDPVFDTVAAMAARSLDAEIALVSLVDEHRQWFKARIGLEARETPRSQAFCAHAIRSDEVMVVPDARLDPRFCDNPLVM
GPPFIRFYAGAPLKLRDGHSIGTLCVIGTSPRPGLDAAAITQLEGLRDLAVLRVENLRSTTYRDGPTGLPNRARFSEDLD
TWLSQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRLAAYLPGGTLLYRLDPTTFGFLAQAEGQRLATL
CTKVAKAFTEPLEHQGIPHTAVASIGAVSLQSSYGAADTIRSLTTSVDIARERCLPWSLYERKHDVAQRNTFRLLAALPA
ALDSASQLRLHFQPRVDLHDHRCVGVEALLRWQHPMIGPVVPSDFIPMAEKTALINRITAWVIDNGIAQAARWQQQGLDF
NLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPDHLAEQLATIAALGVHIAIDDFGTGYSNFSYLK
QLPASSLKIDQSFIRSLPDSRTDRTLVPAMIQLGHSLGQRVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETW
LETPWHEQHAAPVNLLAASLAAARV

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=495, Percent_Identity=28.2828282828283, Blast_Score=190, Evalue=3e-49,
Organism=Escherichia coli, GI1787541, Length=432, Percent_Identity=29.1666666666667, Blast_Score=176, Evalue=6e-45,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=35.1694915254237, Blast_Score=162, Evalue=8e-41,
Organism=Escherichia coli, GI226510982, Length=423, Percent_Identity=26.4775413711584, Blast_Score=129, Evalue=7e-31,
Organism=Escherichia coli, GI87081743, Length=233, Percent_Identity=32.1888412017167, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=32.520325203252, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI87081980, Length=239, Percent_Identity=34.3096234309623, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1787055, Length=233, Percent_Identity=31.7596566523605, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87081845, Length=224, Percent_Identity=33.4821428571429, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788849, Length=207, Percent_Identity=31.8840579710145, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1786507, Length=216, Percent_Identity=31.4814814814815, Blast_Score=100, Evalue=6e-22,
Organism=Escherichia coli, GI87082096, Length=200, Percent_Identity=29, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1787410, Length=140, Percent_Identity=29.2857142857143, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789650, Length=195, Percent_Identity=25.6410256410256, Blast_Score=67, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 73124; Mature: 72993

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLESRAPHVWRGHGTVHASQCGLGRVLQLNGANHRQSRDHASGRYERMPSLPASVASLL
CCCCCCCCCEEECCCEEEECCCCCCEEEEECCCCCCCCCHHHCCHHHHCCCCHHHHHHHC
PPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIALVSLVDEHRQWFKARIG
CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
LEARETPRSQAFCAHAIRSDEVMVVPDARLDPRFCDNPLVMGPPFIRFYAGAPLKLRDGH
CCHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCHHHHCCCCCEEEECCC
SIGTLCVIGTSPRPGLDAAAITQLEGLRDLAVLRVENLRSTTYRDGPTGLPNRARFSEDL
CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
DTWLSQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRLAAYLPGGTLLY
HHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEE
RLDPTTFGFLAQAEGQRLATLCTKVAKAFTEPLEHQGIPHTAVASIGAVSLQSSYGAADT
EECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHECCCCCHHHH
IRSLTTSVDIARERCLPWSLYERKHDVAQRNTFRLLAALPAALDSASQLRLHFQPRVDLH
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCC
DHRCVGVEALLRWQHPMIGPVVPSDFIPMAEKTALINRITAWVIDNGIAQAARWQQQGLD
CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPDHLAEQLATIAA
EEEEEEEEHHCCCCCCHHHHHHCCCHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHH
LGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRTDRTLVPAMIQLGHSLGQ
HHEEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
RVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLETPWHEQHAAPVNLLAAS
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCCHHCCCHHHHHHHH
LAAARV
HHHHCC
>Mature Secondary Structure 
TLESRAPHVWRGHGTVHASQCGLGRVLQLNGANHRQSRDHASGRYERMPSLPASVASLL
CCCCCCCCEEECCCEEEECCCCCCEEEEECCCCCCCCCHHHCCHHHHCCCCHHHHHHHC
PPTLDESTRLEVLRGLCLLDSPPDPVFDTVAAMAARSLDAEIALVSLVDEHRQWFKARIG
CCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
LEARETPRSQAFCAHAIRSDEVMVVPDARLDPRFCDNPLVMGPPFIRFYAGAPLKLRDGH
CCHHCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCHHHHCCCCCEEEECCC
SIGTLCVIGTSPRPGLDAAAITQLEGLRDLAVLRVENLRSTTYRDGPTGLPNRARFSEDL
CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
DTWLSQRDTAPATTAVAIDVCGSDYFRDMVKALGWEYADGYVALAQRRLAAYLPGGTLLY
HHHHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEE
RLDPTTFGFLAQAEGQRLATLCTKVAKAFTEPLEHQGIPHTAVASIGAVSLQSSYGAADT
EECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHECCCCCHHHH
IRSLTTSVDIARERCLPWSLYERKHDVAQRNTFRLLAALPAALDSASQLRLHFQPRVDLH
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCC
DHRCVGVEALLRWQHPMIGPVVPSDFIPMAEKTALINRITAWVIDNGIAQAARWQQQGLD
CCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
FNLALNVSAADLDRPGFAGLLRRGLDRHKLDPRRLEIEFTESAMIRHPDHLAEQLATIAA
EEEEEEEEHHCCCCCCHHHHHHCCCHHHCCCCCEEEEEECCCHHHCCHHHHHHHHHHHHH
LGVHIAIDDFGTGYSNFSYLKQLPASSLKIDQSFIRSLPDSRTDRTLVPAMIQLGHSLGQ
HHEEEEEECCCCCCCCHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
RVVAEGIESAEAYAQLRAWGCDEGQGYWIAKPMPAAALETWLETPWHEQHAAPVNLLAAS
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCCHHCCCHHHHHHHH
LAAARV
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]