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The map label for this gene is yodB [H]

Identifier: 78047278

GI number: 78047278

Start: 1940814

End: 1941434

Strand: Reverse

Name: yodB [H]

Synonym: XCV1722

Alternate gene names: 78047278

Gene position: 1941434-1940814 (Counterclockwise)

Preceding gene: 78047290

Following gene: 78047277

Centisome position: 37.49

GC content: 69.73

Gene sequence:

>621_bases
ATGCGCTCCTCCCCCCCTGCGCCCGCCAGCGCTCCCGTCAACGGCACAGACACCGCGCCCCTGCCAGAACAGGCGCCCAC
AGCTGCGCGCGTGCTGCCCTTGCCCAAGGCGATGCGCGTGCTGCACTGGCTCACCGTGCTGTGCCTGGCCATGGCGGCCA
CGCTGATCCTGCTGCGTGCCGAGCTGGATGGCCGCGCACTGCGTCAGTGGCTGCTGGAAGGCCACCGCCACTTTGGCTTG
CTGGTCCTGGTGCTGTTTGCGTTGCGCATCGGGTTGCGCCTGCGGTTGCGCAGATTGCCGCCCGGTCCACCCGCATCCCT
GCCGATGCGCCTGGCCGCCGGTGCCACGCATGTGGCGATGTACGGCCTGATGCTCGCGCTGCCATTGCTGGGCTGGTCGC
TGAGCAGCGCCTACGGCAAGCAGGTGTATTTCTTCGGCATCCCCTTGCCCGCGTTGGTCGCGCCGGACGGCGACCTCGGC
GACACCCTGGGCACCTGGCACTTGAACGCAGCCTGGGCGCTGCTGGCGCTGGTGCTGCTGCATATCGGCGCCGCGCTCTG
GCATCACCTGGTATTGCGCGACGGCCTGTTGCGCCGCGTGTTGCCGGGCAAGCGCGCATGA

Upstream 100 bases:

>100_bases
GTGCACGTTCACCTGGCCGCCGTTCGGCCGGCGTGGGGAGCCAGGCCTGGCCGCGCAGCGCGCAGCCGGAACCAACGACC
ACCACCGGAAGACAGATCAG

Downstream 100 bases:

>100_bases
GCCGCCGCACCCCGCCGTCTGTCATTCGTTTCCTCGCCCGTTCCCGCACCGCTGCCTCCCGCACCGTCGAACAAGGACTT
TCCATGCCCATGCCCCAGCC

Product: putative cytochrome-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MRSSPPAPASAPVNGTDTAPLPEQAPTAARVLPLPKAMRVLHWLTVLCLAMAATLILLRAELDGRALRQWLLEGHRHFGL
LVLVLFALRIGLRLRLRRLPPGPPASLPMRLAAGATHVAMYGLMLALPLLGWSLSSAYGKQVYFFGIPLPALVAPDGDLG
DTLGTWHLNAAWALLALVLLHIGAALWHHLVLRDGLLRRVLPGKRA

Sequences:

>Translated_206_residues
MRSSPPAPASAPVNGTDTAPLPEQAPTAARVLPLPKAMRVLHWLTVLCLAMAATLILLRAELDGRALRQWLLEGHRHFGL
LVLVLFALRIGLRLRLRRLPPGPPASLPMRLAAGATHVAMYGLMLALPLLGWSLSSAYGKQVYFFGIPLPALVAPDGDLG
DTLGTWHLNAAWALLALVLLHIGAALWHHLVLRDGLLRRVLPGKRA
>Mature_206_residues
MRSSPPAPASAPVNGTDTAPLPEQAPTAARVLPLPKAMRVLHWLTVLCLAMAATLILLRAELDGRALRQWLLEGHRHFGL
LVLVLFALRIGLRLRLRRLPPGPPASLPMRLAAGATHVAMYGLMLALPLLGWSLSSAYGKQVYFFGIPLPALVAPDGDLG
DTLGTWHLNAAWALLALVLLHIGAALWHHLVLRDGLLRRVLPGKRA

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=177, Percent_Identity=31.638418079096, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787296, Length=137, Percent_Identity=37.2262773722628, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 22258; Mature: 22258

Theoretical pI: Translated: 11.88; Mature: 11.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSSPPAPASAPVNGTDTAPLPEQAPTAARVLPLPKAMRVLHWLTVLCLAMAATLILLRA
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELDGRALRQWLLEGHRHFGLLVLVLFALRIGLRLRLRRLPPGPPASLPMRLAAGATHVAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHH
YGLMLALPLLGWSLSSAYGKQVYFFGIPLPALVAPDGDLGDTLGTWHLNAAWALLALVLL
HHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
HIGAALWHHLVLRDGLLRRVLPGKRA
HHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRSSPPAPASAPVNGTDTAPLPEQAPTAARVLPLPKAMRVLHWLTVLCLAMAATLILLRA
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ELDGRALRQWLLEGHRHFGLLVLVLFALRIGLRLRLRRLPPGPPASLPMRLAAGATHVAM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCHHHHHH
YGLMLALPLLGWSLSSAYGKQVYFFGIPLPALVAPDGDLGDTLGTWHLNAAWALLALVLL
HHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
HIGAALWHHLVLRDGLLRRVLPGKRA
HHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]