Click here to switch to the map view.

The map label for this gene is ccmH1 [H]

Identifier: 78047266

GI number: 78047266

Start: 1930586

End: 1931017

Strand: Reverse

Name: ccmH1 [H]

Synonym: XCV1710

Alternate gene names: 78047266

Gene position: 1931017-1930586 (Counterclockwise)

Preceding gene: 78047267

Following gene: 78047265

Centisome position: 37.29

GC content: 65.05

Gene sequence:

>432_bases
GTGCGTTTGTTGCTAGTGTTGCTGCTTGGCATGCTGCTGGCGCCCTCGTTGGCAGCGCAGGCCGTGGATCCGCTGCCGTT
CAAGAACCGCAGCGAGGAGGCGCGCTACCAGCGCTTGACCGCGCAACTGCGCTGCCTGGTATGTCAGAACGAAAACCTGG
CCGATTCCAACGCGAGCCTGGCGCGCGATTTGCGGCATCAGGTGTTCGCGCAACTGCAGGCCGGCAAGAGCGATGCGCAG
ATCAAGCAGTACATGGTCGATCGCTATTCGGATTTCGTGCTGTACGACCCGCCGGTCACACGCGGCACCTGGCTGCTGTG
GTTCGGGCCGGCGCTGATGTTGCTTGCAGGTGCCGGCGTGGTCATCCACACCGTGCGCACCCGTGCGCGCGCCGGCACGC
CGGTGGCGCCGCAAGTGGAGGACCAATGGTGA

Upstream 100 bases:

>100_bases
TTCCGGCCATCGCCGCGCTGCCCAAGGGTACGCCGTGATGGCGGCGCGTCACACACGACTGTGGCATTGGCGCTGGCATT
GGCGCGCGCAAGGCCGCCGT

Downstream 100 bases:

>100_bases
TGGCGGGTTTTTATATCGCAAGCGCCGTGCTGGTGGCGCTGGCCTTGCTGCTGTTGCTGGCACCGCTGCTGCGCCGCCCC
ACCGGCAGCGGTCGTGCGCG

Product: C-type cytochrome biogenesis protein CcmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MRLLLVLLLGMLLAPSLAAQAVDPLPFKNRSEEARYQRLTAQLRCLVCQNENLADSNASLARDLRHQVFAQLQAGKSDAQ
IKQYMVDRYSDFVLYDPPVTRGTWLLWFGPALMLLAGAGVVIHTVRTRARAGTPVAPQVEDQW

Sequences:

>Translated_143_residues
MRLLLVLLLGMLLAPSLAAQAVDPLPFKNRSEEARYQRLTAQLRCLVCQNENLADSNASLARDLRHQVFAQLQAGKSDAQ
IKQYMVDRYSDFVLYDPPVTRGTWLLWFGPALMLLAGAGVVIHTVRTRARAGTPVAPQVEDQW
>Mature_143_residues
MRLLLVLLLGMLLAPSLAAQAVDPLPFKNRSEEARYQRLTAQLRCLVCQNENLADSNASLARDLRHQVFAQLQAGKSDAQ
IKQYMVDRYSDFVLYDPPVTRGTWLLWFGPALMLLAGAGVVIHTVRTRARAGTPVAPQVEDQW

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=121, Percent_Identity=44.6280991735537, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1790512, Length=85, Percent_Identity=43.5294117647059, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 15989; Mature: 15989

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLVLLLGMLLAPSLAAQAVDPLPFKNRSEEARYQRLTAQLRCLVCQNENLADSNASL
CHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
ARDLRHQVFAQLQAGKSDAQIKQYMVDRYSDFVLYDPPVTRGTWLLWFGPALMLLAGAGV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHCCCH
VIHTVRTRARAGTPVAPQVEDQW
HHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MRLLLVLLLGMLLAPSLAAQAVDPLPFKNRSEEARYQRLTAQLRCLVCQNENLADSNASL
CHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
ARDLRHQVFAQLQAGKSDAQIKQYMVDRYSDFVLYDPPVTRGTWLLWFGPALMLLAGAGV
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCCCCCHHHHHHHHHHHHCCCH
VIHTVRTRARAGTPVAPQVEDQW
HHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]