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The map label for this gene is 78046965

Identifier: 78046965

GI number: 78046965

Start: 1590294

End: 1590860

Strand: Reverse

Name: 78046965

Synonym: XCV1409

Alternate gene names: NA

Gene position: 1590860-1590294 (Counterclockwise)

Preceding gene: 78046966

Following gene: 78046963

Centisome position: 30.72

GC content: 61.55

Gene sequence:

>567_bases
ATGATCCGCAGCCTGTTGCCCCATTGGAATCCCGAATGGCTGGCGATTGCGGTACCGACGGTCAAGATCGTGCTGATCCT
GGCAGTTGCCGCGTTGGTCCGCCTGCTGCTCCGGCAGTTGCTGCGGCGGCTGTGCACGCGTTACAGCGTGCCCGCCGAAA
TGATGATCGGCATCCGCCGCGTCGGCAGCTTCGTCATTTCGGTCAGTGCCTTGCTGATGGTGCTACGGGTCATCGGCGTC
TCGGGCGGCACGTTGTGGACCGCATTCACCGGGTTCGCAGCCGTCGGCGCAGTGGCGTTCTTCGCTGCATGGAGCGTGCT
GTCCAATATCTTCTGCACATTCCTGATCATCACCACGCGGCCATTTCGCCTGCACGATCACATCGAGGTTCTCGAAGGCG
GCGACAAGCCCGGCTTGAAGGGACGTGTGATCGATATCAACGTGATCTACACCACGCTGGAAGAAACCGGCGAGCGTGCC
GGCAGCGTACTGCAAGTTCCCAACAGCCTGTTTTTCCAGCGCACGACGCGTCGCTGGCGCGAGACCGGCAGCTTCAACGC
CAACTAG

Upstream 100 bases:

>100_bases
GCATTCACTCTGCACACCGACAGCGCAGAGTTGGCCCGCTACAATGGATTCCCCTTTGATTCTGCACGCCGTGATGCCTG
CCTCCGATGCGTTGCCCGCC

Downstream 100 bases:

>100_bases
GCGCAAGGCCAAGACGCGATACTGCGGCGAGTTCGCCAGTGGCAGAACCCATACACGGCGATATCGGCAAGCGGCAACCT
TCGACGACCGCAGTAGGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: Transmembrane Protein; Small-Conductance Mechanosensitive Channel Protein; Small-Conductance Mechanosensitive Channel

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MIRSLLPHWNPEWLAIAVPTVKIVLILAVAALVRLLLRQLLRRLCTRYSVPAEMMIGIRRVGSFVISVSALLMVLRVIGV
SGGTLWTAFTGFAAVGAVAFFAAWSVLSNIFCTFLIITTRPFRLHDHIEVLEGGDKPGLKGRVIDINVIYTTLEETGERA
GSVLQVPNSLFFQRTTRRWRETGSFNAN

Sequences:

>Translated_188_residues
MIRSLLPHWNPEWLAIAVPTVKIVLILAVAALVRLLLRQLLRRLCTRYSVPAEMMIGIRRVGSFVISVSALLMVLRVIGV
SGGTLWTAFTGFAAVGAVAFFAAWSVLSNIFCTFLIITTRPFRLHDHIEVLEGGDKPGLKGRVIDINVIYTTLEETGERA
GSVLQVPNSLFFQRTTRRWRETGSFNAN
>Mature_188_residues
MIRSLLPHWNPEWLAIAVPTVKIVLILAVAALVRLLLRQLLRRLCTRYSVPAEMMIGIRRVGSFVISVSALLMVLRVIGV
SGGTLWTAFTGFAAVGAVAFFAAWSVLSNIFCTFLIITTRPFRLHDHIEVLEGGDKPGLKGRVIDINVIYTTLEETGERA
GSVLQVPNSLFFQRTTRRWRETGSFNAN

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20909; Mature: 20909

Theoretical pI: Translated: 11.51; Mature: 11.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSLLPHWNPEWLAIAVPTVKIVLILAVAALVRLLLRQLLRRLCTRYSVPAEMMIGIRR
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VGSFVISVSALLMVLRVIGVSGGTLWTAFTGFAAVGAVAFFAAWSVLSNIFCTFLIITTR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFRLHDHIEVLEGGDKPGLKGRVIDINVIYTTLEETGERAGSVLQVPNSLFFQRTTRRWR
CEEHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
ETGSFNAN
HCCCCCCC
>Mature Secondary Structure
MIRSLLPHWNPEWLAIAVPTVKIVLILAVAALVRLLLRQLLRRLCTRYSVPAEMMIGIRR
CCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
VGSFVISVSALLMVLRVIGVSGGTLWTAFTGFAAVGAVAFFAAWSVLSNIFCTFLIITTR
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFRLHDHIEVLEGGDKPGLKGRVIDINVIYTTLEETGERAGSVLQVPNSLFFQRTTRRWR
CEEHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
ETGSFNAN
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA