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The map label for this gene is xylB [H]

Identifier: 78046881

GI number: 78046881

Start: 1486957

End: 1488888

Strand: Reverse

Name: xylB [H]

Synonym: XCV1325

Alternate gene names: 78046881

Gene position: 1488888-1486957 (Counterclockwise)

Preceding gene: 78046883

Following gene: 78046870

Centisome position: 28.75

GC content: 65.89

Gene sequence:

>1932_bases
ATGCGAGGTGATGACACAGCGTCGAAGCCGTTTGGCATGGCACGCCGGTTGGCGGCGCCGCGTGGCGCCGCGTGGCGCCG
CGCGCACGATATGTCAGCAATGTTGCAGCGAAGTGGCAGCGCCCGGTCCACACACCCCGCCACGCGCGTGGAGGCCTGCC
ACCACGCGGGGTTGGCATCGCAAAACGTCATGCCACGCCGCCCTGCGTGCTGTCATGCTGGTGTCGTACTGGCGTTGCGC
CAGGGCATGGCACGAGGGGATCTCTTGAAACGACTCGCATGGGTGGCCGGCCTGCTGGCCGCATTGATCTGTCAGCTGGC
GCATGCCGGCACCGCGTTGATCACGCAGATCGATTACCAAGGCGACGATGGTGGCCCCGCGCCAACCGCCGCGCAGTACC
GCAACCCGGTCGTGGCCGGTTTTCATCCGGACCCGTCGGCGGTGCGCGTCGGCGACGATTTTTATCTGGTGAATTCCAGT
TTCGGCTACTTCCCCGGCCTGCCGGTGTTCAAGAGCAGCGACCTGGTGCATTGGAACCAGATCGGCAACGCGATCGACCG
TCCAACCCAGATCAACTACGGCAACGACGAACTGACCCGCGGCCTGTTTGCCGCCAGCATCAGCTACCACGCTGGCACCT
TCTATATCGCCAACACCTGTTTCTACTGCGATGGCGGCAATTTCCTGATCACCGCCACCGATCCGGCCGGGCCGTGGTCG
GATCCGATCTGGCTGGACGTCAAGGGCATCGACCCCTCGCTGTTTTTCGATGACGATGGCAGTGCCTGGCTGGTCAACAA
CGACGTGCCGGCCGGCAAGCTGCGCTACGACGGGCACCGCGCCATCTGGCTGCAGCGGCTGGATCTGGCCAGCATGAAGT
TGGTCGGCACCCGTCAGGTGATCGTGGATTCGGGCTTCAAGCCGGCCACCAATCCCGAACACATCGAAGGCCCGCACCTG
TTCCGCCGCGATGGCTACTACTACCTCACCGCGGCCGAAGGTGGCACCGGCGAGCAGCATGCGCAGATGATCTACCGCAG
CCGCCAGATCACCGGGCCATACGAAACCTGGAGCGGCAATCCGGTACTCACCCAACGCGACCTGGACCCATTGCGCAATG
CGCCGATCACCTCGGCCGGGCATGCACAGTTCGTCGAACTCAAGGACGGCACATGGTGGGCGGTGTTTCTCGCAACGCGC
CCTTACCGCGGCAATCACTACAACCTGGGCCGGGAAACCTTCCTGTTGCCAGTGCAATGGCGCGATGGCTGGCCGGTGGT
GCTGCCGCACGGCGCCGCGGTCCCTGTCGTGGCAGCGCGCCCACCCTTGCCGGCGGGCACGCAGCCCCTGCCGACCACCG
GGCCGATGCAGTGGAGCGAGCGCTTCGGGGATGCGCGCGTGCCAATGCAATGGATGACCATCCACCCACCCATCAGGCCG
TGGTATCAGCCCGGCGCGCAAGGCTTGCGCGTGACGCCGGCAAACATTGCGCTGGGCGATATCGGCCGTGGTCAGCCGGC
CTATCTGGGTCATCGCCTGCAGCATCATCACGCCACCTTGGTCGCCAGCGTGGATGGCAGCGCGCTGGCACCAGGCGAAC
AGGCCGGTCTGGCGATCGTGGCCAAGGAGAGCAACTTCCTGGCAGCAATGCTGGTGCGCGAGGACAGCGGCGCTGCGGTG
GTGCTGTATCGCCGCGCCGGACCGCAACAGCCCGGCACCGGCACCGAACTGGCACGCGCGCCACTGCCCGATGCCACGCA
ACCGGTGAAACTGCGCTTTGCGCTGGACGCCGCACGCGTGCGCGTGGATTACGCCGTCGGCCAGGGGCAGTGGCAGACGC
TGCTCGAACAAGGCGATGCAAGTGTGCTCAGTACCGAGTCGGCCGGCGGTTTTCTTGGCGCCACATTCGGGCCGTACGCG
TATGCGCGCTAA

Upstream 100 bases:

>100_bases
GCAAGGCGGTGCGGCGGCGCGCAGCGACCTGTGCAATAGCGGACACCGGCGACGGAAAGACAGGCGAGTACAACGACATG
CGGGTTGATCCTAGGTAGTG

Downstream 100 bases:

>100_bases
GCCAAGTGCAGGAACGTGGCTGCACGCCCGGTGCATGCGCAGGCCGCGCCCGCCCCGCAGCGACGCATGCGTGTTTGGAG
CCGCTTAACGCCCTACGCCC

Product: putative xylosidase

Products: NA

Alternate protein names: Beta-xylosidase; 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase; Alpha-N-arabinofuranosidase; Arabinosidase [H]

Number of amino acids: Translated: 643; Mature: 643

Protein sequence:

>643_residues
MRGDDTASKPFGMARRLAAPRGAAWRRAHDMSAMLQRSGSARSTHPATRVEACHHAGLASQNVMPRRPACCHAGVVLALR
QGMARGDLLKRLAWVAGLLAALICQLAHAGTALITQIDYQGDDGGPAPTAAQYRNPVVAGFHPDPSAVRVGDDFYLVNSS
FGYFPGLPVFKSSDLVHWNQIGNAIDRPTQINYGNDELTRGLFAASISYHAGTFYIANTCFYCDGGNFLITATDPAGPWS
DPIWLDVKGIDPSLFFDDDGSAWLVNNDVPAGKLRYDGHRAIWLQRLDLASMKLVGTRQVIVDSGFKPATNPEHIEGPHL
FRRDGYYYLTAAEGGTGEQHAQMIYRSRQITGPYETWSGNPVLTQRDLDPLRNAPITSAGHAQFVELKDGTWWAVFLATR
PYRGNHYNLGRETFLLPVQWRDGWPVVLPHGAAVPVVAARPPLPAGTQPLPTTGPMQWSERFGDARVPMQWMTIHPPIRP
WYQPGAQGLRVTPANIALGDIGRGQPAYLGHRLQHHHATLVASVDGSALAPGEQAGLAIVAKESNFLAAMLVREDSGAAV
VLYRRAGPQQPGTGTELARAPLPDATQPVKLRFALDAARVRVDYAVGQGQWQTLLEQGDASVLSTESAGGFLGATFGPYA
YAR

Sequences:

>Translated_643_residues
MRGDDTASKPFGMARRLAAPRGAAWRRAHDMSAMLQRSGSARSTHPATRVEACHHAGLASQNVMPRRPACCHAGVVLALR
QGMARGDLLKRLAWVAGLLAALICQLAHAGTALITQIDYQGDDGGPAPTAAQYRNPVVAGFHPDPSAVRVGDDFYLVNSS
FGYFPGLPVFKSSDLVHWNQIGNAIDRPTQINYGNDELTRGLFAASISYHAGTFYIANTCFYCDGGNFLITATDPAGPWS
DPIWLDVKGIDPSLFFDDDGSAWLVNNDVPAGKLRYDGHRAIWLQRLDLASMKLVGTRQVIVDSGFKPATNPEHIEGPHL
FRRDGYYYLTAAEGGTGEQHAQMIYRSRQITGPYETWSGNPVLTQRDLDPLRNAPITSAGHAQFVELKDGTWWAVFLATR
PYRGNHYNLGRETFLLPVQWRDGWPVVLPHGAAVPVVAARPPLPAGTQPLPTTGPMQWSERFGDARVPMQWMTIHPPIRP
WYQPGAQGLRVTPANIALGDIGRGQPAYLGHRLQHHHATLVASVDGSALAPGEQAGLAIVAKESNFLAAMLVREDSGAAV
VLYRRAGPQQPGTGTELARAPLPDATQPVKLRFALDAARVRVDYAVGQGQWQTLLEQGDASVLSTESAGGFLGATFGPYA
YAR
>Mature_643_residues
MRGDDTASKPFGMARRLAAPRGAAWRRAHDMSAMLQRSGSARSTHPATRVEACHHAGLASQNVMPRRPACCHAGVVLALR
QGMARGDLLKRLAWVAGLLAALICQLAHAGTALITQIDYQGDDGGPAPTAAQYRNPVVAGFHPDPSAVRVGDDFYLVNSS
FGYFPGLPVFKSSDLVHWNQIGNAIDRPTQINYGNDELTRGLFAASISYHAGTFYIANTCFYCDGGNFLITATDPAGPWS
DPIWLDVKGIDPSLFFDDDGSAWLVNNDVPAGKLRYDGHRAIWLQRLDLASMKLVGTRQVIVDSGFKPATNPEHIEGPHL
FRRDGYYYLTAAEGGTGEQHAQMIYRSRQITGPYETWSGNPVLTQRDLDPLRNAPITSAGHAQFVELKDGTWWAVFLATR
PYRGNHYNLGRETFLLPVQWRDGWPVVLPHGAAVPVVAARPPLPAGTQPLPTTGPMQWSERFGDARVPMQWMTIHPPIRP
WYQPGAQGLRVTPANIALGDIGRGQPAYLGHRLQHHHATLVASVDGSALAPGEQAGLAIVAKESNFLAAMLVREDSGAAV
VLYRRAGPQQPGTGTELARAPLPDATQPVKLRFALDAARVRVDYAVGQGQWQTLLEQGDASVLSTESAGGFLGATFGPYA
YAR

Specific function: Has a 1.6-fold higher activity as an arabinosidase than as a beta-xylosidase when tested on the substrates nitrophenyl- beta-D-xylopyranoside and P-nitrophenyl-alpha-L-arabinofuranoside [H]

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=528, Percent_Identity=28.9772727272727, Blast_Score=205, Evalue=6e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37; =3.2.1.55 [H]

Molecular weight: Translated: 69718; Mature: 69718

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGDDTASKPFGMARRLAAPRGAAWRRAHDMSAMLQRSGSARSTHPATRVEACHHAGLAS
CCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
QNVMPRRPACCHAGVVLALRQGMARGDLLKRLAWVAGLLAALICQLAHAGTALITQIDYQ
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEC
GDDGGPAPTAAQYRNPVVAGFHPDPSAVRVGDDFYLVNSSFGYFPGLPVFKSSDLVHWNQ
CCCCCCCCCHHHHCCCEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCCEEEHHH
IGNAIDRPTQINYGNDELTRGLFAASISYHAGTFYIANTCFYCDGGNFLITATDPAGPWS
HHHHHCCCCEECCCCHHHHHHHHEEEEECCCCEEEEEEEEEEECCCCEEEEECCCCCCCC
DPIWLDVKGIDPSLFFDDDGSAWLVNNDVPAGKLRYDGHRAIWLQRLDLASMKLVGTRQV
CCEEEEEECCCCEEEECCCCCEEEEECCCCCCCEEECCCEEEEEEECCHHHEEEECCEEE
IVDSGFKPATNPEHIEGPHLFRRDGYYYLTAAEGGTGEQHAQMIYRSRQITGPYETWSGN
EEECCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PVLTQRDLDPLRNAPITSAGHAQFVELKDGTWWAVFLATRPYRGNHYNLGRETFLLPVQW
EEEECCCCCHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEE
RDGWPVVLPHGAAVPVVAARPPLPAGTQPLPTTGPMQWSERFGDARVPMQWMTIHPPIRP
CCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCC
WYQPGAQGLRVTPANIALGDIGRGQPAYLGHRLQHHHATLVASVDGSALAPGEQAGLAIV
CCCCCCCCCEEECCCEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEE
AKESNFLAAMLVREDSGAAVVLYRRAGPQQPGTGTELARAPLPDATQPVKLRFALDAARV
EECCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEEEEEE
RVDYAVGQGQWQTLLEQGDASVLSTESAGGFLGATFGPYAYAR
EEEEEECCCHHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCC
>Mature Secondary Structure
MRGDDTASKPFGMARRLAAPRGAAWRRAHDMSAMLQRSGSARSTHPATRVEACHHAGLAS
CCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCC
QNVMPRRPACCHAGVVLALRQGMARGDLLKRLAWVAGLLAALICQLAHAGTALITQIDYQ
CCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEC
GDDGGPAPTAAQYRNPVVAGFHPDPSAVRVGDDFYLVNSSFGYFPGLPVFKSSDLVHWNQ
CCCCCCCCCHHHHCCCEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCCCCEEEHHH
IGNAIDRPTQINYGNDELTRGLFAASISYHAGTFYIANTCFYCDGGNFLITATDPAGPWS
HHHHHCCCCEECCCCHHHHHHHHEEEEECCCCEEEEEEEEEEECCCCEEEEECCCCCCCC
DPIWLDVKGIDPSLFFDDDGSAWLVNNDVPAGKLRYDGHRAIWLQRLDLASMKLVGTRQV
CCEEEEEECCCCEEEECCCCCEEEEECCCCCCCEEECCCEEEEEEECCHHHEEEECCEEE
IVDSGFKPATNPEHIEGPHLFRRDGYYYLTAAEGGTGEQHAQMIYRSRQITGPYETWSGN
EEECCCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PVLTQRDLDPLRNAPITSAGHAQFVELKDGTWWAVFLATRPYRGNHYNLGRETFLLPVQW
EEEECCCCCHHHCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEE
RDGWPVVLPHGAAVPVVAARPPLPAGTQPLPTTGPMQWSERFGDARVPMQWMTIHPPIRP
CCCCCEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEEECCCCCC
WYQPGAQGLRVTPANIALGDIGRGQPAYLGHRLQHHHATLVASVDGSALAPGEQAGLAIV
CCCCCCCCCEEECCCEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEE
AKESNFLAAMLVREDSGAAVVLYRRAGPQQPGTGTELARAPLPDATQPVKLRFALDAARV
EECCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCHHHCCCCCCCCCCEEEEEEEEEEEE
RVDYAVGQGQWQTLLEQGDASVLSTESAGGFLGATFGPYAYAR
EEEEEECCCHHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1905520 [H]