Click here to switch to the map view.

The map label for this gene is rci [H]

Identifier: 78046862

GI number: 78046862

Start: 1462729

End: 1463835

Strand: Reverse

Name: rci [H]

Synonym: XCV1306

Alternate gene names: 78046862

Gene position: 1463835-1462729 (Counterclockwise)

Preceding gene: 78046870

Following gene: 78046861

Centisome position: 28.27

GC content: 62.33

Gene sequence:

>1107_bases
ATGGCGTCATTTCGCAAGCGGGACGAGTTCCAGTGGCAGGCACGGGTTCGCCGCAGAGGGTACCCGGAGCAGACCAAGAC
CTTCAATACCAAGGCCGAGGCCGAGGCTTGGGCCCGCAAGATCGAGTCCGAGATCGACCGAGGTGTCTTTGTCAGCCGCA
CTGAGGCCGAGGCCACGTCCCTCGAAGAGGTTCTCGACCGCTATGAGCGGGAGGTTGTGGCGAGCAAGAAGGGCAAGGTG
CAGGAGCAGTCGATCATTCGACTGTGGAAAGCCACCACCCTCGCGAAGCGGTCGATGGCCTCCATCCGCAGCACTGACGT
GGTCGCACAGCGAGACCTATGGCTCCAGCGGTGCAAGCCGGCTACCGTGCTGCGTCGCCTTGCTCTGCTCTCCCACGTCT
TCAACATTGCACGGCGTGAATGGGGCATGGAGAGTCTGAGCAACCCGGTGGAACTGATTCGCAAGCCGCAGCCTAACAAT
GCGAGGACTCGAAGGATTGCCCTCGCCAGTCCTGTCCAACCCACCACAGCAGACGAATCGCCCCCAGACCACGGCGAACT
GGAGCGCATCATTGCTGCCAGCGGCTCCGGGGTACTGCCCGCCGTACTTCGGCTGGCTCTTGAGACGGCCATGCGGCGCA
GCGAAATCGTCGGCCTGCGGTGGGAGCATATCGATCTAGCCAAGCGTGTTGCCCACCTCCCGGACACCAAGAACGGGAGT
TCGCGCGACGTGCCCCTGTCGTCCCGAGCGGTGGCGGTCCTCGAAAGCGTGCTCCCAAAGGCTTCGGACATGTCTGAGCA
GGATGGCGGCGAGGACGATGATCGCGTGTTCAAGGTCAGCAGCGATGCCATCACCCGAGCGTTCGTTCGCGCCCTCGCTC
GTGCTCGAAAGCAGTACCTCAAAGAGTGCGAGGGACGAGGCATCAAGCCCCAGAAGCGCTTTCTCGCCGATCTGCGGTTC
CATGACCTCCGCCACGAGGCTACTTCGCGATTGGCCGCCATTTTTCCAATGCACGAGCTGACCAAGATCACGGGGCACAA
AGACCCCCGTATGCTGATGCGGTACTACCACCCGCGTGCCGAGGACTTGGCCAAGCGACTTGATTAG

Upstream 100 bases:

>100_bases
TATCGCGCTTTAGGGCAGGGCCAGAGCCATCTATTCCGGTGCAAAAATTATTTTTTGTACCCACTTTTGTCCCACTTCCC
TGAAAGCGCTGACCAAGCAA

Downstream 100 bases:

>100_bases
AGGTTCATGCATGTGGTTCCACGTCAAAACCTACCGGGACAAGCACGGCCGTATTCGGCGCTACAAGACCGTCGAGTTGC
GCCGGATTGACAACAGCGGT

Product: shufflon-specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MASFRKRDEFQWQARVRRRGYPEQTKTFNTKAEAEAWARKIESEIDRGVFVSRTEAEATSLEEVLDRYEREVVASKKGKV
QEQSIIRLWKATTLAKRSMASIRSTDVVAQRDLWLQRCKPATVLRRLALLSHVFNIARREWGMESLSNPVELIRKPQPNN
ARTRRIALASPVQPTTADESPPDHGELERIIAASGSGVLPAVLRLALETAMRRSEIVGLRWEHIDLAKRVAHLPDTKNGS
SRDVPLSSRAVAVLESVLPKASDMSEQDGGEDDDRVFKVSSDAITRAFVRALARARKQYLKECEGRGIKPQKRFLADLRF
HDLRHEATSRLAAIFPMHELTKITGHKDPRMLMRYYHPRAEDLAKRLD

Sequences:

>Translated_368_residues
MASFRKRDEFQWQARVRRRGYPEQTKTFNTKAEAEAWARKIESEIDRGVFVSRTEAEATSLEEVLDRYEREVVASKKGKV
QEQSIIRLWKATTLAKRSMASIRSTDVVAQRDLWLQRCKPATVLRRLALLSHVFNIARREWGMESLSNPVELIRKPQPNN
ARTRRIALASPVQPTTADESPPDHGELERIIAASGSGVLPAVLRLALETAMRRSEIVGLRWEHIDLAKRVAHLPDTKNGS
SRDVPLSSRAVAVLESVLPKASDMSEQDGGEDDDRVFKVSSDAITRAFVRALARARKQYLKECEGRGIKPQKRFLADLRF
HDLRHEATSRLAAIFPMHELTKITGHKDPRMLMRYYHPRAEDLAKRLD
>Mature_367_residues
ASFRKRDEFQWQARVRRRGYPEQTKTFNTKAEAEAWARKIESEIDRGVFVSRTEAEATSLEEVLDRYEREVVASKKGKVQ
EQSIIRLWKATTLAKRSMASIRSTDVVAQRDLWLQRCKPATVLRRLALLSHVFNIARREWGMESLSNPVELIRKPQPNNA
RTRRIALASPVQPTTADESPPDHGELERIIAASGSGVLPAVLRLALETAMRRSEIVGLRWEHIDLAKRVAHLPDTKNGSS
RDVPLSSRAVAVLESVLPKASDMSEQDGGEDDDRVFKVSSDAITRAFVRALARARKQYLKECEGRGIKPQKRFLADLRFH
DLRHEATSRLAAIFPMHELTKITGHKDPRMLMRYYHPRAEDLAKRLD

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=246, Percent_Identity=28.0487804878049, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 42003; Mature: 41871

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFRKRDEFQWQARVRRRGYPEQTKTFNTKAEAEAWARKIESEIDRGVFVSRTEAEATS
CCCCCCCHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCHHHHHH
LEEVLDRYEREVVASKKGKVQEQSIIRLWKATTLAKRSMASIRSTDVVAQRDLWLQRCKP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
ATVLRRLALLSHVFNIARREWGMESLSNPVELIRKPQPNNARTRRIALASPVQPTTADES
HHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHCCCCCCCCHHHEEEECCCCCCCCCCCC
PPDHGELERIIAASGSGVLPAVLRLALETAMRRSEIVGLRWEHIDLAKRVAHLPDTKNGS
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
SRDVPLSSRAVAVLESVLPKASDMSEQDGGEDDDRVFKVSSDAITRAFVRALARARKQYL
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHH
KECEGRGIKPQKRFLADLRFHDLRHEATSRLAAIFPMHELTKITGHKDPRMLMRYYHPRA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
EDLAKRLD
HHHHHHCC
>Mature Secondary Structure 
ASFRKRDEFQWQARVRRRGYPEQTKTFNTKAEAEAWARKIESEIDRGVFVSRTEAEATS
CCCCCCHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCEEECCHHHHHH
LEEVLDRYEREVVASKKGKVQEQSIIRLWKATTLAKRSMASIRSTDVVAQRDLWLQRCKP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
ATVLRRLALLSHVFNIARREWGMESLSNPVELIRKPQPNNARTRRIALASPVQPTTADES
HHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHCCCCCCCCHHHEEEECCCCCCCCCCCC
PPDHGELERIIAASGSGVLPAVLRLALETAMRRSEIVGLRWEHIDLAKRVAHLPDTKNGS
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
SRDVPLSSRAVAVLESVLPKASDMSEQDGGEDDDRVFKVSSDAITRAFVRALARARKQYL
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHH
KECEGRGIKPQKRFLADLRFHDLRHEATSRLAAIFPMHELTKITGHKDPRMLMRYYHPRA
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
EDLAKRLD
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]