Click here to switch to the map view.

The map label for this gene is 78046858

Identifier: 78046858

GI number: 78046858

Start: 1459412

End: 1459978

Strand: Reverse

Name: 78046858

Synonym: XCV1302

Alternate gene names: NA

Gene position: 1459978-1459412 (Counterclockwise)

Preceding gene: 78046859

Following gene: 78046857

Centisome position: 28.19

GC content: 59.26

Gene sequence:

>567_bases
ATGTCTAGCGAGCAAGAACTCCCCGCCTTACTAACGTCGCTTCAAAACACGCTCAAGCTGCAATCCGCGTTGATGGCCAA
GTTCGAGCAACGCGAGGTTCGTATGCAAGCCTCCTTTGATCAGCGCATGCAGGCGTTGCAAGGCGAGGTAGCGCAGGTAC
ACCGCCGTGTAGACGGCATTGTCGGGGGAGCCAGCTCCCAGATCGCCAAGGAAGCCAAGGACGCGGTAGCGCCCGTCGCA
GCGCAGTACGACCGCGATGTATCGGCCACGTCTGCGCAACTGCAAAAAGCAAACAAGACAGTGTGGATGTGGTTCGCCGC
CGCAGGCGCGATCTTGCTACTGGTGCTGCTCGTCGGCTGGACCGTGTTGGGCTATTACCGTCGGGAGTTGGCCGCCGTCA
AAGACGAACTCGGCCGCTATGAAAATGCCATACCCGTACTACAAGCCTACTACGCCTCCGATGCCGCTATCTGTGGCGGC
CGCGTATGCGTCAACGTTGATCCGAATGGGCAACGAGCAGGCGACAAGCGGCAGTATCGGCAAGCCAAACCGCGTTCCCA
GAAGTAA

Upstream 100 bases:

>100_bases
GGTTGCCGCGCAGCAGAGAGAAGAACTCCAGCAGCAGGAAATGGCCCGGCAGCAGGGTCCTGTGATGAGAATGTGATCCC
CAACCGGCATCGGAACGCCC

Downstream 100 bases:

>100_bases
GGCTCGGCAGGAGCATGCGGACTGACTCTCTCGCCTATGCAGGCTATTGGCGCAACTCGCTAGCGGATTCCGAAGCAGGT
AACGGAGCCTTTCAGGCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 188; Mature: 187

Protein sequence:

>188_residues
MSSEQELPALLTSLQNTLKLQSALMAKFEQREVRMQASFDQRMQALQGEVAQVHRRVDGIVGGASSQIAKEAKDAVAPVA
AQYDRDVSATSAQLQKANKTVWMWFAAAGAILLLVLLVGWTVLGYYRRELAAVKDELGRYENAIPVLQAYYASDAAICGG
RVCVNVDPNGQRAGDKRQYRQAKPRSQK

Sequences:

>Translated_188_residues
MSSEQELPALLTSLQNTLKLQSALMAKFEQREVRMQASFDQRMQALQGEVAQVHRRVDGIVGGASSQIAKEAKDAVAPVA
AQYDRDVSATSAQLQKANKTVWMWFAAAGAILLLVLLVGWTVLGYYRRELAAVKDELGRYENAIPVLQAYYASDAAICGG
RVCVNVDPNGQRAGDKRQYRQAKPRSQK
>Mature_187_residues
SSEQELPALLTSLQNTLKLQSALMAKFEQREVRMQASFDQRMQALQGEVAQVHRRVDGIVGGASSQIAKEAKDAVAPVAA
QYDRDVSATSAQLQKANKTVWMWFAAAGAILLLVLLVGWTVLGYYRRELAAVKDELGRYENAIPVLQAYYASDAAICGGR
VCVNVDPNGQRAGDKRQYRQAKPRSQK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20686; Mature: 20555

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEQELPALLTSLQNTLKLQSALMAKFEQREVRMQASFDQRMQALQGEVAQVHRRVDGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGASSQIAKEAKDAVAPVAAQYDRDVSATSAQLQKANKTVWMWFAAAGAILLLVLLVGW
HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
TVLGYYRRELAAVKDELGRYENAIPVLQAYYASDAAICGGRVCVNVDPNGQRAGDKRQYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCEEEEEECCCCCCCCHHHHHH
QAKPRSQK
HCCCCCCC
>Mature Secondary Structure 
SSEQELPALLTSLQNTLKLQSALMAKFEQREVRMQASFDQRMQALQGEVAQVHRRVDGI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGGASSQIAKEAKDAVAPVAAQYDRDVSATSAQLQKANKTVWMWFAAAGAILLLVLLVGW
HCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
TVLGYYRRELAAVKDELGRYENAIPVLQAYYASDAAICGGRVCVNVDPNGQRAGDKRQYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCEEEEEECCCCCCCCHHHHHH
QAKPRSQK
HCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA