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The map label for this gene is rpoE1

Identifier: 78046510

GI number: 78046510

Start: 1082892

End: 1083740

Strand: Reverse

Name: rpoE1

Synonym: XCV0954

Alternate gene names: NA

Gene position: 1083740-1082892 (Counterclockwise)

Preceding gene: 78046512

Following gene: 78046509

Centisome position: 20.93

GC content: 65.61

Gene sequence:

>849_bases
ATGCCCCAGCACCACCATCGCCCCGATCAACACGATGCCGTGGATGAAGTTGGAACCGGACATCAGCGGCGTATGCAGGA
TCACCGGCACCCGCGAGATGATCACATGGCCGGCGATGGCCGCCAGCATGAAGATGTACAGCGCTACGAATCCGTCGCTC
ATCGTCTCTGGCTCCACTGGCCGGTGCGGCCCGCCGATCATACCCACGCCACGCCCGTGCGGGCGCCTGTCAACCGAATC
CGCGCTCGCCCGTTGACGTCGTATCGTCTCCGCGGAAGCTACGCTGTGCTGGTGGGAACTCCTTTCGATCCGCAAGCTAC
CGCACCGGCCGCCACCGCACCGGTGTCGCTGGATGCATTTTTGGCCGGCATCGGGCCGCGTGCCTTCCGTTTTGCCGAGG
CCGGATTGCGGCACCGCGAAGATGCGCTGGACGCCGTGCAGGACGCCATGGTGAAGCTGCTGGGCTACCGCGAACGGCCG
GCCGAGGAATGGACGCCGCTGTTCTGGAGCATCCTGCGCAGCCGCATCATCGACCTGCAGCGGCGACGCAGCTTTCGTCT
GAAGTTCTGGGCACCGGCCGAGCGCGCCGACGACGAAGGTCCGATCGACTGGGCCGACCCCGGCACCGGACCGGTCGACG
AACAACAGCATCGACAGGCCTACCAACGGCTGGTCGATGCATTGCGCACATTGCCGGCGCGCCAGCGCGAAGCCTTCACT
CTGCGCGTGCTCGAAGACCTGGACGTGGCCACCACTGCCAAGGCGATGGGCTGCTCCGAAGGCTCGGTCAAAACCCACCT
GTCGCGCGCGCGCGACGCGTTGCAAAAACAGTTCGAGGATTTCCTGTGA

Upstream 100 bases:

>100_bases
TCTCCAGCATTCGCTCGGTCACCACATAACCGCCCGCTGCGTTGCCCGCGCCCAGCGCCACTGCGACAAATCCCAGCGCT
TTTTCCAGTGTGGTGTCGGC

Downstream 100 bases:

>100_bases
ACCGCTCCCACGACCCCGCCCGGCTGGATGCGCAGCTGCGCCAGCTGCACGCCACCGCGCTGACCAGCCTGCCGCCGCAA
ACCCTGGCGCGCCTGCGCCA

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Transcription Regulator Protein; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma-70 Factor; Specialized Sigma Subunits Of RNA Polymerase; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MPQHHHRPDQHDAVDEVGTGHQRRMQDHRHPRDDHMAGDGRQHEDVQRYESVAHRLWLHWPVRPADHTHATPVRAPVNRI
RARPLTSYRLRGSYAVLVGTPFDPQATAPAATAPVSLDAFLAGIGPRAFRFAEAGLRHREDALDAVQDAMVKLLGYRERP
AEEWTPLFWSILRSRIIDLQRRRSFRLKFWAPAERADDEGPIDWADPGTGPVDEQQHRQAYQRLVDALRTLPARQREAFT
LRVLEDLDVATTAKAMGCSEGSVKTHLSRARDALQKQFEDFL

Sequences:

>Translated_282_residues
MPQHHHRPDQHDAVDEVGTGHQRRMQDHRHPRDDHMAGDGRQHEDVQRYESVAHRLWLHWPVRPADHTHATPVRAPVNRI
RARPLTSYRLRGSYAVLVGTPFDPQATAPAATAPVSLDAFLAGIGPRAFRFAEAGLRHREDALDAVQDAMVKLLGYRERP
AEEWTPLFWSILRSRIIDLQRRRSFRLKFWAPAERADDEGPIDWADPGTGPVDEQQHRQAYQRLVDALRTLPARQREAFT
LRVLEDLDVATTAKAMGCSEGSVKTHLSRARDALQKQFEDFL
>Mature_281_residues
PQHHHRPDQHDAVDEVGTGHQRRMQDHRHPRDDHMAGDGRQHEDVQRYESVAHRLWLHWPVRPADHTHATPVRAPVNRIR
ARPLTSYRLRGSYAVLVGTPFDPQATAPAATAPVSLDAFLAGIGPRAFRFAEAGLRHREDALDAVQDAMVKLLGYRERPA
EEWTPLFWSILRSRIIDLQRRRSFRLKFWAPAERADDEGPIDWADPGTGPVDEQQHRQAYQRLVDALRTLPARQREAFTL
RVLEDLDVATTAKAMGCSEGSVKTHLSRARDALQKQFEDFL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32271; Mature: 32139

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQHHHRPDQHDAVDEVGTGHQRRMQDHRHPRDDHMAGDGRQHEDVQRYESVAHRLWLHW
CCCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PVRPADHTHATPVRAPVNRIRARPLTSYRLRGSYAVLVGTPFDPQATAPAATAPVSLDAF
CCCCCCCCCCCCHHHHHHHHHCCCCHHEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHH
LAGIGPRAFRFAEAGLRHREDALDAVQDAMVKLLGYRERPAEEWTPLFWSILRSRIIDLQ
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
RRRSFRLKFWAPAERADDEGPIDWADPGTGPVDEQQHRQAYQRLVDALRTLPARQREAFT
HHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
LRVLEDLDVATTAKAMGCSEGSVKTHLSRARDALQKQFEDFL
HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PQHHHRPDQHDAVDEVGTGHQRRMQDHRHPRDDHMAGDGRQHEDVQRYESVAHRLWLHW
CCCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
PVRPADHTHATPVRAPVNRIRARPLTSYRLRGSYAVLVGTPFDPQATAPAATAPVSLDAF
CCCCCCCCCCCCHHHHHHHHHCCCCHHEEECCCEEEEEECCCCCCCCCCCCCCCCHHHHH
LAGIGPRAFRFAEAGLRHREDALDAVQDAMVKLLGYRERPAEEWTPLFWSILRSRIIDLQ
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
RRRSFRLKFWAPAERADDEGPIDWADPGTGPVDEQQHRQAYQRLVDALRTLPARQREAFT
HHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
LRVLEDLDVATTAKAMGCSEGSVKTHLSRARDALQKQFEDFL
HHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA