BacMap

Definition	Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome.
Accession	NC_007508
Length	5,178,466

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The map label for this gene is ydfG [C]

Identifier: 78046183

GI number: 78046183

Start: 708880

End: 709398

Strand: Reverse

Name: ydfG [C]

Synonym: XCV0627

Alternate gene names: 78046183

Gene position: 709398-708880 (Counterclockwise)

Preceding gene: 78046188

Following gene: 78046182

Centisome position: 13.7

GC content: 66.09

Gene sequence:

>519_bases
ATGACGATCGAAGACAAGGTCGTGGTCATCACCGGCGCCGGTAGCGGCACGGGCCGGGCCACCGCGCTTCACCTTGGCGC
ACTCGGCGCCAAGGTGGTCCTCGGTGCGCGCCGCCAGGCACGCATTGCCGAGGTCGCCAAGGAAATCGTCCGATCCGGCG
GGCGGGCGGTCTACCGGCCGACCGACGTCACCGTGCACCAGGAGGTCCTGGCCCTGGTGGACCTGGCCTGCTCACAATTC
GGGCGGCTCGACGTCATGGTCAACAACGCCGGCATCAGTCCACTGTCCCGATTCGATGCCCTGCAGGTCGATGCATGGAA
CGCGATGATCGATGTCAATCTGCGTGGCGTGCTCCACGGCATTGCGGCCGCGCTGCCCGTCTTGGGCCGCCAGCAGAGCG
GTCATGTCATCAACGTGGTCTCCACAGCCGGATTGCGCATCGTGCCGACGATGGGCGTCTATGCTGCGACCAAAAACGCG
GTCAGGACTATCAGCGAGGCGCTGACCTGCCCCCACTGA

Upstream 100 bases:

>100_bases
GTCATCCTTGGACGATTGCGATGAAATCATGGCCGCGCAAGCATAATCCATCCAATCGGCAGCGCTACTGTGGGTGGCAC
GTCCATCACGGAGCACGCAT

Downstream 100 bases:

>100_bases
GCCGTACCAGCTGAAGCTATAAAGTCCGTGAACCCAAGAGGACGGACATGAAGAAGAGCAGATTCAGCACCGAGCAGATC
ATCGGGTTTATCAAACAGGC

Product: putative oxidoreductase

Products: NA

Alternate protein names: ORFA [H]

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MTIEDKVVVITGAGSGTGRATALHLGALGAKVVLGARRQARIAEVAKEIVRSGGRAVYRPTDVTVHQEVLALVDLACSQF
GRLDVMVNNAGISPLSRFDALQVDAWNAMIDVNLRGVLHGIAAALPVLGRQQSGHVINVVSTAGLRIVPTMGVYAATKNA
VRTISEALTCPH

Sequences:

>Translated_172_residues
MTIEDKVVVITGAGSGTGRATALHLGALGAKVVLGARRQARIAEVAKEIVRSGGRAVYRPTDVTVHQEVLALVDLACSQF
GRLDVMVNNAGISPLSRFDALQVDAWNAMIDVNLRGVLHGIAAALPVLGRQQSGHVINVVSTAGLRIVPTMGVYAATKNA
VRTISEALTCPH
>Mature_171_residues
TIEDKVVVITGAGSGTGRATALHLGALGAKVVLGARRQARIAEVAKEIVRSGGRAVYRPTDVTVHQEVLALVDLACSQFG
RLDVMVNNAGISPLSRFDALQVDAWNAMIDVNLRGVLHGIAAALPVLGRQQSGHVINVVSTAGLRIVPTMGVYAATKNAV
RTISEALTCPH

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7706318, Length=170, Percent_Identity=30.5882352941176, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI20149619, Length=178, Percent_Identity=31.4606741573034, Blast_Score=77, Evalue=6e-15,
Organism=Homo sapiens, GI4504505, Length=177, Percent_Identity=32.7683615819209, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI109715829, Length=173, Percent_Identity=31.7919075144509, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI40807363, Length=163, Percent_Identity=30.6748466257669, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI142976729, Length=168, Percent_Identity=27.3809523809524, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI40254986, Length=148, Percent_Identity=31.7567567567568, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI224922801, Length=184, Percent_Identity=29.3478260869565, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI31542939, Length=171, Percent_Identity=30.4093567251462, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI4503817, Length=166, Percent_Identity=28.3132530120482, Blast_Score=68, Evalue=4e-12,
Organism=Homo sapiens, GI19923817, Length=169, Percent_Identity=25.4437869822485, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI223718074, Length=168, Percent_Identity=32.1428571428571, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI10190704, Length=145, Percent_Identity=29.6551724137931, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI83715985, Length=178, Percent_Identity=31.4606741573034, Blast_Score=64, Evalue=7e-11,
Organism=Homo sapiens, GI4758504, Length=178, Percent_Identity=31.4606741573034, Blast_Score=64, Evalue=8e-11,
Organism=Escherichia coli, GI1787820, Length=160, Percent_Identity=31.25, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI87082160, Length=167, Percent_Identity=27.5449101796407, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1790717, Length=168, Percent_Identity=29.7619047619048, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1787905, Length=143, Percent_Identity=31.4685314685315, Blast_Score=71, Evalue=4e-14,
Organism=Escherichia coli, GI1787335, Length=173, Percent_Identity=29.4797687861272, Blast_Score=68, Evalue=3e-13,
Organism=Escherichia coli, GI87082100, Length=168, Percent_Identity=29.7619047619048, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1789208, Length=172, Percent_Identity=29.6511627906977, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788459, Length=166, Percent_Identity=30.1204819277108, Blast_Score=61, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=178, Percent_Identity=32.0224719101124, Blast_Score=76, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI17559104, Length=165, Percent_Identity=32.1212121212121, Blast_Score=76, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=172, Percent_Identity=29.6511627906977, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI193203115, Length=163, Percent_Identity=29.4478527607362, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=168, Percent_Identity=33.9285714285714, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17564282, Length=143, Percent_Identity=27.972027972028, Blast_Score=74, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17567345, Length=168, Percent_Identity=30.3571428571429, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=141, Percent_Identity=31.2056737588652, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71997402, Length=176, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=175, Percent_Identity=31.4285714285714, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71994604, Length=169, Percent_Identity=32.5443786982249, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=168, Percent_Identity=27.3809523809524, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=164, Percent_Identity=33.5365853658537, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=169, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=170, Percent_Identity=31.1764705882353, Blast_Score=70, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=172, Percent_Identity=30.8139534883721, Blast_Score=69, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17562910, Length=148, Percent_Identity=31.7567567567568, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=152, Percent_Identity=29.6052631578947, Blast_Score=67, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17570069, Length=176, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=167, Percent_Identity=32.3353293413174, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=167, Percent_Identity=29.940119760479, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=171, Percent_Identity=26.9005847953216, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=156, Percent_Identity=29.4871794871795, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=163, Percent_Identity=26.3803680981595, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=144, Percent_Identity=29.8611111111111, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17555612, Length=183, Percent_Identity=27.3224043715847, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=177, Percent_Identity=34.4632768361582, Blast_Score=88, Evalue=7e-19,
Organism=Saccharomyces cerevisiae, GI6323882, Length=169, Percent_Identity=31.3609467455621, Blast_Score=77, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=166, Percent_Identity=28.9156626506024, Blast_Score=67, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571526, Length=165, Percent_Identity=33.3333333333333, Blast_Score=95, Evalue=3e-20,
Organism=Drosophila melanogaster, GI281364892, Length=166, Percent_Identity=35.5421686746988, Blast_Score=84, Evalue=4e-17,
Organism=Drosophila melanogaster, GI21357041, Length=161, Percent_Identity=31.055900621118, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24644339, Length=162, Percent_Identity=31.4814814814815, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI23397609, Length=166, Percent_Identity=35.5421686746988, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21355631, Length=166, Percent_Identity=30.1204819277108, Blast_Score=78, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24640492, Length=163, Percent_Identity=31.9018404907975, Blast_Score=75, Evalue=2e-14,
Organism=Drosophila melanogaster, GI18859837, Length=151, Percent_Identity=35.0993377483444, Blast_Score=74, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21358495, Length=167, Percent_Identity=29.3413173652695, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24580925, Length=171, Percent_Identity=32.1637426900585, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI17737361, Length=171, Percent_Identity=32.7485380116959, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24663911, Length=178, Percent_Identity=33.1460674157303, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI21355319, Length=173, Percent_Identity=27.7456647398844, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21357673, Length=148, Percent_Identity=27.7027027027027, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24641388, Length=173, Percent_Identity=34.1040462427746, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI281364494, Length=172, Percent_Identity=29.6511627906977, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24651139, Length=180, Percent_Identity=31.1111111111111, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24640442, Length=171, Percent_Identity=33.9181286549708, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007236, Length=169, Percent_Identity=30.1775147928994, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007238, Length=169, Percent_Identity=30.1775147928994, Blast_Score=64, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24643142, Length=171, Percent_Identity=29.8245614035088, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 17981; Mature: 17850

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIEDKVVVITGAGSGTGRATALHLGALGAKVVLGARRQARIAEVAKEIVRSGGRAVYRP
CCCCCEEEEEEECCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEECC
TDVTVHQEVLALVDLACSQFGRLDVMVNNAGISPLSRFDALQVDAWNAMIDVNLRGVLHG
CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCEEEEECCCEEEEEEHHHHHHH
IAAALPVLGRQQSGHVINVVSTAGLRIVPTMGVYAATKNAVRTISEALTCPH
HHHHHHHHCCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TIEDKVVVITGAGSGTGRATALHLGALGAKVVLGARRQARIAEVAKEIVRSGGRAVYRP
CCCCEEEEEEECCCCCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEECC
TDVTVHQEVLALVDLACSQFGRLDVMVNNAGISPLSRFDALQVDAWNAMIDVNLRGVLHG
CCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHCEEEEECCCEEEEEEHHHHHHH
IAAALPVLGRQQSGHVINVVSTAGLRIVPTMGVYAATKNAVRTISEALTCPH
HHHHHHHHCCCCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1905979; 11679669 [H]