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The map label for this gene is yciR [C]

Identifier: 78046085

GI number: 78046085

Start: 595349

End: 596947

Strand: Reverse

Name: yciR [C]

Synonym: XCV0529

Alternate gene names: 78046085

Gene position: 596947-595349 (Counterclockwise)

Preceding gene: 78046087

Following gene: 78046084

Centisome position: 11.53

GC content: 68.36

Gene sequence:

>1599_bases
TTGTTTGCGCAGAGCGTGCTGCACGGCGCCGGCATGCATGCGCAGGTCGAAATGACCGCCGCCAGCGTGCCGCAAGCGAT
CCAGGACTATCACCCGGATCTGATCCTGATGGATCTGCACATGCCCGAGCTGGACGGCATCCGCCTGACCACGCTGATCC
GCCAGCAGCCCGGTCAGCAGTTGCTGCCGATCGTGTTCCTGACCGGCGACCCGGACCCGGAGCGCCAGTTCGAAGTGCTC
GACAGCGGCGCCGACGACTTCCTCACCAAGCCGATCCGCCCGCGCCACCTGATCGCTGCGGTGTCCAACCGCATCCGGCG
CGCACGCCAACAGGCGCTGCAGCAAGCCGGCGAACAGGTCAGCGCGCGCAGCAATCCGGAAACCGGCCTGCCCACCCGCG
GCCACGTGATGGACCTGCTCGCCGATGCGCTGAAGCGCAAGCAGTCCGGCGGCCTGTTCTTCATCGAGATCGCCAGCGCG
CTCGGCCTGCGCGAGCGCTACGGCTATGCCGCCTACGAGCGCCTGATGACCCAGGCCGGGCACCGCCTGGCCAGCGCCGC
CCAGCCCTACCCGCTGGCGCGCCTGAACGACAACAGCTTCCTGCTGCTGGCCATCGACATGCCCGAAGCCAGCCTGGAAC
AGCAGGCATTGGAGATCCGCCAGCGGCTGTCTGCCAACGCCTTCCCGGTGCGCGAAGAAGAATCCGTGCACGTGCGCTGC
GCCATCGGCGTGGCACCGCTGGGCGTGGGCTTCGACGACACCGGTAGCGCGCTGGAAGCGGTCGAACGCACCGCGCTGCA
GGCACGCCTGCGCAGCGACGGCGTGCAGACCTACCTGGCGCCCAGCCAGGCCGAACAGCAGGAACAACTGCGGCTGGTCG
AAGGCCAGCTCGAACTGGCCTATCAGCCGATCGTGGCCGTGGCCGGCGGCGACACCGCGCAGTACCAGGTACTGCTGCGG
CTGCGCCAGGCTGACGGCACCTTGCTCTCGGCAGGCCAGGTCATTCCTGCCGCAGAAGCCGCCGGGCGCATCGCCGATCT
GGACCAGCAGGTCATGGACCACGCGCTGGGCCTGCTGCACCTGTACCAGCACGCCAGCCCGCCGCTGCGCCTGTTCGTCT
CGCAATCGCCGCGCACGCTGGCCCGCGACGCCTTCGCCGACTGGCTGCTCAAGGCGCTGGTCGAACGTGGCGTGGCCGGC
CAGTCGCTGATCGTGGATCTGCGCCTGGACGATGCATTGATCCATGCCGTCACCGTGCAGCAGTTCTGCGCCAAGTTGAT
GCCGGCCGGCGTGCAGTTCTGCCTCAGCCAGTTCGAACCCGGCGACGAGGCCAACGCACTGCTGGCCCAGCTGCCGCTGA
GCTTCGTGCGCATGGCCAACCGCTTCGCCGATGCGCACGGCAACGCGGCGGTGCGCGACGAACTGCGCGGCGTCATCGAC
ATCGCCCACCAGCGCGGCCTGCTGATCATCGGCCAACGCATCGAAGATCCGCAGGCTGCGGCTGCGATGTGGATGAGCGG
CGTGGATTTCATCCAGGGCAACCTGGTGCAGACGGTCGGCAAGGAACTGGACTTCGACTTCACGAGCGCGGTGCTCTGA

Upstream 100 bases:

>100_bases
CACATCGGCAGCGGCCACCGCGCCGCACGACGGCGAGGACAATGTCGCCGCCGATGCGCCGTACCGCGTCCTCATCGTCG
AGGACGACCGCTCGCAGGCC

Downstream 100 bases:

>100_bases
GTGAGAGAGCGGGCAGCAGGTCTTCGCGCCTGGAGCATCTTGGCAGTGCTGGCCGCGCTGGCGGCCGCACTCGGCGCAGG
CCTGCAATGGTCGTCGCTGC

Product: putative two-component system regulatory protein

Products: NA

Alternate protein names: ORF5 [H]

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MFAQSVLHGAGMHAQVEMTAASVPQAIQDYHPDLILMDLHMPELDGIRLTTLIRQQPGQQLLPIVFLTGDPDPERQFEVL
DSGADDFLTKPIRPRHLIAAVSNRIRRARQQALQQAGEQVSARSNPETGLPTRGHVMDLLADALKRKQSGGLFFIEIASA
LGLRERYGYAAYERLMTQAGHRLASAAQPYPLARLNDNSFLLLAIDMPEASLEQQALEIRQRLSANAFPVREEESVHVRC
AIGVAPLGVGFDDTGSALEAVERTALQARLRSDGVQTYLAPSQAEQQEQLRLVEGQLELAYQPIVAVAGGDTAQYQVLLR
LRQADGTLLSAGQVIPAAEAAGRIADLDQQVMDHALGLLHLYQHASPPLRLFVSQSPRTLARDAFADWLLKALVERGVAG
QSLIVDLRLDDALIHAVTVQQFCAKLMPAGVQFCLSQFEPGDEANALLAQLPLSFVRMANRFADAHGNAAVRDELRGVID
IAHQRGLLIIGQRIEDPQAAAAMWMSGVDFIQGNLVQTVGKELDFDFTSAVL

Sequences:

>Translated_532_residues
MFAQSVLHGAGMHAQVEMTAASVPQAIQDYHPDLILMDLHMPELDGIRLTTLIRQQPGQQLLPIVFLTGDPDPERQFEVL
DSGADDFLTKPIRPRHLIAAVSNRIRRARQQALQQAGEQVSARSNPETGLPTRGHVMDLLADALKRKQSGGLFFIEIASA
LGLRERYGYAAYERLMTQAGHRLASAAQPYPLARLNDNSFLLLAIDMPEASLEQQALEIRQRLSANAFPVREEESVHVRC
AIGVAPLGVGFDDTGSALEAVERTALQARLRSDGVQTYLAPSQAEQQEQLRLVEGQLELAYQPIVAVAGGDTAQYQVLLR
LRQADGTLLSAGQVIPAAEAAGRIADLDQQVMDHALGLLHLYQHASPPLRLFVSQSPRTLARDAFADWLLKALVERGVAG
QSLIVDLRLDDALIHAVTVQQFCAKLMPAGVQFCLSQFEPGDEANALLAQLPLSFVRMANRFADAHGNAAVRDELRGVID
IAHQRGLLIIGQRIEDPQAAAAMWMSGVDFIQGNLVQTVGKELDFDFTSAVL
>Mature_532_residues
MFAQSVLHGAGMHAQVEMTAASVPQAIQDYHPDLILMDLHMPELDGIRLTTLIRQQPGQQLLPIVFLTGDPDPERQFEVL
DSGADDFLTKPIRPRHLIAAVSNRIRRARQQALQQAGEQVSARSNPETGLPTRGHVMDLLADALKRKQSGGLFFIEIASA
LGLRERYGYAAYERLMTQAGHRLASAAQPYPLARLNDNSFLLLAIDMPEASLEQQALEIRQRLSANAFPVREEESVHVRC
AIGVAPLGVGFDDTGSALEAVERTALQARLRSDGVQTYLAPSQAEQQEQLRLVEGQLELAYQPIVAVAGGDTAQYQVLLR
LRQADGTLLSAGQVIPAAEAAGRIADLDQQVMDHALGLLHLYQHASPPLRLFVSQSPRTLARDAFADWLLKALVERGVAG
QSLIVDLRLDDALIHAVTVQQFCAKLMPAGVQFCLSQFEPGDEANALLAQLPLSFVRMANRFADAHGNAAVRDELRGVID
IAHQRGLLIIGQRIEDPQAAAAMWMSGVDFIQGNLVQTVGKELDFDFTSAVL

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=415, Percent_Identity=22.8915662650602, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR011006
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 58082; Mature: 58082

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAQSVLHGAGMHAQVEMTAASVPQAIQDYHPDLILMDLHMPELDGIRLTTLIRQQPGQQ
CCHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHCCCCC
LLPIVFLTGDPDPERQFEVLDSGADDFLTKPIRPRHLIAAVSNRIRRARQQALQQAGEQV
EEEEEEEECCCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SARSNPETGLPTRGHVMDLLADALKRKQSGGLFFIEIASALGLRERYGYAAYERLMTQAG
HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHH
HRLASAAQPYPLARLNDNSFLLLAIDMPEASLEQQALEIRQRLSANAFPVREEESVHVRC
HHHHHCCCCCCEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
AIGVAPLGVGFDDTGSALEAVERTALQARLRSDGVQTYLAPSQAEQQEQLRLVEGQLELA
EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHE
YQPIVAVAGGDTAQYQVLLRLRQADGTLLSAGQVIPAAEAAGRIADLDQQVMDHALGLLH
ECCEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHH
LYQHASPPLRLFVSQSPRTLARDAFADWLLKALVERGVAGQSLIVDLRLDDALIHAVTVQ
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH
QFCAKLMPAGVQFCLSQFEPGDEANALLAQLPLSFVRMANRFADAHGNAAVRDELRGVID
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IAHQRGLLIIGQRIEDPQAAAAMWMSGVDFIQGNLVQTVGKELDFDFTSAVL
HHHCCCEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure
MFAQSVLHGAGMHAQVEMTAASVPQAIQDYHPDLILMDLHMPELDGIRLTTLIRQQPGQQ
CCHHHHHHCCCCCEEEEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHCCCCC
LLPIVFLTGDPDPERQFEVLDSGADDFLTKPIRPRHLIAAVSNRIRRARQQALQQAGEQV
EEEEEEEECCCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SARSNPETGLPTRGHVMDLLADALKRKQSGGLFFIEIASALGLRERYGYAAYERLMTQAG
HCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHH
HRLASAAQPYPLARLNDNSFLLLAIDMPEASLEQQALEIRQRLSANAFPVREEESVHVRC
HHHHHCCCCCCEEEECCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE
AIGVAPLGVGFDDTGSALEAVERTALQARLRSDGVQTYLAPSQAEQQEQLRLVEGQLELA
EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHE
YQPIVAVAGGDTAQYQVLLRLRQADGTLLSAGQVIPAAEAAGRIADLDQQVMDHALGLLH
ECCEEEEECCCHHHHHHHHHHHHCCCCEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHH
LYQHASPPLRLFVSQSPRTLARDAFADWLLKALVERGVAGQSLIVDLRLDDALIHAVTVQ
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHH
QFCAKLMPAGVQFCLSQFEPGDEANALLAQLPLSFVRMANRFADAHGNAAVRDELRGVID
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
IAHQRGLLIIGQRIEDPQAAAAMWMSGVDFIQGNLVQTVGKELDFDFTSAVL
HHHCCCEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7763384 [H]