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The map label for this gene is amaB [H]

Identifier: 78045865

GI number: 78045865

Start: 353296

End: 354582

Strand: Reverse

Name: amaB [H]

Synonym: XCV0309

Alternate gene names: 78045865

Gene position: 354582-353296 (Counterclockwise)

Preceding gene: 78045866

Following gene: 78045864

Centisome position: 6.85

GC content: 70.32

Gene sequence:

>1287_bases
ATGCCCGCTGCCCTGCCGTCCCGCCAAGCAACCGCCGACCTCACCGCTCCTGGCGGTGCGCGTGCGGTGGCACGCTGCGA
CGCGCTGGGCGTTGCGTCCTACAGCGATAGCGATACCGGGCTATTCCGCGGCTGGCTTGGTCCTGCCCACCGCGCCACGG
TGGAACAGGTGAGCACCTGGATGAAGGCGGCCGGCATGCAGGTGCGCATCGATCCCCTCGGCACATTGGTGGGCCGGTAC
GCCGGCACGCGGCCAGACACGCCGGCGCTGCTGATCGGCAGCCACCTGGACAGCGTGCGCGATGCCGGGCGCTACGACGG
CCCGCTCGGCATCCTGCTCGGGATCGAATGCGTCGCTGCGCTGCATGCACAGGGGCGCAGACTACCGTTCGCCATCGAGG
TCATCGCCTTCGGCGACGAGGAAGGCTCGCGCTTTCCCGCGTCCATGTTCTGTAGCGGCGCGGTGGCCGGCACGCTCGAT
CCCGCCAGGCTGGCGGTCACCGACGCCGCCGGCATCACGGTGGCCAGCGCCCTGGCCGCGTGGAACCTGGACATCGCCCA
CGTGCAGCGCGCCGCCCGCGCGCCGGGCAGCGTGCTGGCGTATCTGGAAACGCATATCGAACAAGGCCCGGTACTGGAAG
CCGAAGGATTGCCGCTCGGCATCGTCAGCGCCATCGCCGCGCAGCGGCGCTTCGCGCTGCGCTTCGAGGGCCGCGCCGGG
CATGCCGGCACCACCAGCATGTCACTGCGCCGCGACGCGTTGAGCGCCGCCGCCGAAGCGCTGCTGGCCATCGAGCGCAT
CGCGCGCGTAGGCAGCAGCGATCTGGTTGCCACCGTCGGCACGCTGCAGGTGGCACACGGCGCCACCAATGTGGTGCCGG
GGCGTGTGGACTGCACGCTGGACGTGCGCGCCGGCAGCGACGCGAGCCGCGATGCCGCCGTGCATCAGATCGAACAGGCA
CTGGCGCAGATCGCCATCCACCGCGGCATCGCCATCGCCATCGAGCCGCTGCAGACACTGGCTGCCAGCCCCTGCGCGCC
GGCACTGATCACGCGGCTGGAACATGCGGTTGCCGCGCAAGGCATCGCACCGCGCCAGCTGGTCTCCGGTGCGGGCCACG
ATGCCATGGTGATGGCGGCGCTGTGCCCGACTGCGATGCTGTTCGTGCGCTGCGCCGGCGGGATCAGCCATCATCCGGAC
GAGCATGTCGATCCGGCCGATGCCGAGATTGCACTGGCGGTCATGCGCCATTTCATCGAACACCTGGGAGAACCCCTTGT
CACCTGA

Upstream 100 bases:

>100_bases
TTGATGGCGACAGGACTGCCTCCCTATAGTCCAAGCGTCACCTCTCCCGCCTGCTCCTGGACCGCTGTTGAAGGCTCCAC
GAGCCCCGTTGGTCCTGTCG

Downstream 100 bases:

>100_bases
TCTGCGTCAGCTGCACACCTTTGGCGAACTCGATCCCCCGCAGCGCCTGTTGATGGGCCCGGGCCCGGTCAATGCGCATC
CGCGCGTGCTGCGTGCGATG

Product: allantoate amidohydrolase

Products: NA

Alternate protein names: L-carbamoylase [H]

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MPAALPSRQATADLTAPGGARAVARCDALGVASYSDSDTGLFRGWLGPAHRATVEQVSTWMKAAGMQVRIDPLGTLVGRY
AGTRPDTPALLIGSHLDSVRDAGRYDGPLGILLGIECVAALHAQGRRLPFAIEVIAFGDEEGSRFPASMFCSGAVAGTLD
PARLAVTDAAGITVASALAAWNLDIAHVQRAARAPGSVLAYLETHIEQGPVLEAEGLPLGIVSAIAAQRRFALRFEGRAG
HAGTTSMSLRRDALSAAAEALLAIERIARVGSSDLVATVGTLQVAHGATNVVPGRVDCTLDVRAGSDASRDAAVHQIEQA
LAQIAIHRGIAIAIEPLQTLAASPCAPALITRLEHAVAAQGIAPRQLVSGAGHDAMVMAALCPTAMLFVRCAGGISHHPD
EHVDPADAEIALAVMRHFIEHLGEPLVT

Sequences:

>Translated_428_residues
MPAALPSRQATADLTAPGGARAVARCDALGVASYSDSDTGLFRGWLGPAHRATVEQVSTWMKAAGMQVRIDPLGTLVGRY
AGTRPDTPALLIGSHLDSVRDAGRYDGPLGILLGIECVAALHAQGRRLPFAIEVIAFGDEEGSRFPASMFCSGAVAGTLD
PARLAVTDAAGITVASALAAWNLDIAHVQRAARAPGSVLAYLETHIEQGPVLEAEGLPLGIVSAIAAQRRFALRFEGRAG
HAGTTSMSLRRDALSAAAEALLAIERIARVGSSDLVATVGTLQVAHGATNVVPGRVDCTLDVRAGSDASRDAAVHQIEQA
LAQIAIHRGIAIAIEPLQTLAASPCAPALITRLEHAVAAQGIAPRQLVSGAGHDAMVMAALCPTAMLFVRCAGGISHHPD
EHVDPADAEIALAVMRHFIEHLGEPLVT
>Mature_427_residues
PAALPSRQATADLTAPGGARAVARCDALGVASYSDSDTGLFRGWLGPAHRATVEQVSTWMKAAGMQVRIDPLGTLVGRYA
GTRPDTPALLIGSHLDSVRDAGRYDGPLGILLGIECVAALHAQGRRLPFAIEVIAFGDEEGSRFPASMFCSGAVAGTLDP
ARLAVTDAAGITVASALAAWNLDIAHVQRAARAPGSVLAYLETHIEQGPVLEAEGLPLGIVSAIAAQRRFALRFEGRAGH
AGTTSMSLRRDALSAAAEALLAIERIARVGSSDLVATVGTLQVAHGATNVVPGRVDCTLDVRAGSDASRDAAVHQIEQAL
AQIAIHRGIAIAIEPLQTLAASPCAPALITRLEHAVAAQGIAPRQLVSGAGHDAMVMAALCPTAMLFVRCAGGISHHPDE
HVDPADAEIALAVMRHFIEHLGEPLVT

Specific function: Involved In The Anaerobic Utilization Of Allantoin. Converts Allantoate To (S)-Ureidoglycolate And Ammonia. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI1786726, Length=370, Percent_Identity=32.972972972973, Blast_Score=196, Evalue=3e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.87 [H]

Molecular weight: Translated: 44225; Mature: 44094

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAALPSRQATADLTAPGGARAVARCDALGVASYSDSDTGLFRGWLGPAHRATVEQVSTW
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH
MKAAGMQVRIDPLGTLVGRYAGTRPDTPALLIGSHLDSVRDAGRYDGPLGILLGIECVAA
HHHCCCEEEECHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LHAQGRRLPFAIEVIAFGDEEGSRFPASMFCSGAVAGTLDPARLAVTDAAGITVASALAA
HHHCCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCHHEEEECCCHHHHHHHHHH
WNLDIAHVQRAARAPGSVLAYLETHIEQGPVLEAEGLPLGIVSAIAAQRRFALRFEGRAG
HCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHEEEEECCCCC
HAGTTSMSLRRDALSAAAEALLAIERIARVGSSDLVATVGTLQVAHGATNVVPGRVDCTL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEE
DVRAGSDASRDAAVHQIEQALAQIAIHRGIAIAIEPLQTLAASPCAPALITRLEHAVAAQ
EECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHC
GIAPRQLVSGAGHDAMVMAALCPTAMLFVRCAGGISHHPDEHVDPADAEIALAVMRHFIE
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
HLGEPLVT
HHCCCCCC
>Mature Secondary Structure 
PAALPSRQATADLTAPGGARAVARCDALGVASYSDSDTGLFRGWLGPAHRATVEQVSTW
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHH
MKAAGMQVRIDPLGTLVGRYAGTRPDTPALLIGSHLDSVRDAGRYDGPLGILLGIECVAA
HHHCCCEEEECHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHH
LHAQGRRLPFAIEVIAFGDEEGSRFPASMFCSGAVAGTLDPARLAVTDAAGITVASALAA
HHHCCCCCCEEEEEEEECCCCCCCCCHHHHHCCCCCCCCCCHHEEEECCCHHHHHHHHHH
WNLDIAHVQRAARAPGSVLAYLETHIEQGPVLEAEGLPLGIVSAIAAQRRFALRFEGRAG
HCCHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHEEEEECCCCC
HAGTTSMSLRRDALSAAAEALLAIERIARVGSSDLVATVGTLQVAHGATNVVPGRVDCTL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEE
DVRAGSDASRDAAVHQIEQALAQIAIHRGIAIAIEPLQTLAASPCAPALITRLEHAVAAQ
EECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHC
GIAPRQLVSGAGHDAMVMAALCPTAMLFVRCAGGISHHPDEHVDPADAEIALAVMRHFIE
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH
HLGEPLVT
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9023955; 8285691 [H]