Click here to switch to the map view.

The map label for this gene is 78045850

Identifier: 78045850

GI number: 78045850

Start: 338204

End: 339406

Strand: Reverse

Name: 78045850

Synonym: XCV0294

Alternate gene names: NA

Gene position: 339406-338204 (Counterclockwise)

Preceding gene: 78045851

Following gene: 78045848

Centisome position: 6.55

GC content: 63.34

Gene sequence:

>1203_bases
ATGGGACTATGCATTTCAAAGCCGGCGATGTCTGGGTCGAGCGTGGCAGCGTCACCTGAGCATCCCGAAAGCCCTGCCTC
AGAGCAGGTCACCGCCCCCACGCCTTTACCCGAGCCATCGGTGCCGCCTAGCCTGCAGGGCTTGGCGAGACTCGGCGCTG
CCCGTGCGAGGCGGAGGCGCTCCGGGAAACCGACCCTGCAGCCGCACGAAGTCCAGCAGGCCGCCTACCAACTCGGAATG
CGCCTCAGCGGCAGGCCCATTGAAGACGTTCGCGACCGTCAACGCCTGGCCGACGCTACGGCAACGGTGCACGAGACACG
GCTGGCCTTGCATCATGGACGAGGCAATATCGAGAGCGATTTTCGGCTCAGCAATGGGCGCAGCTCCACCTGTAGTTACC
TGTCTTACAGTTTCCTGTCTTACTGGCCCGGGAAACATGACATCAATTTGATGGCAGGTTGCGCGCTGGCTGTCAGCGCA
GGCAATTGTGACCAAAACGCAGCGATCAACACACGCCGGCATGCGGCCCGCATGGAGGGTGGCGGGCAGATAACCAACGT
CTGTGACCAAGCGTGCGCCCACATGTACGCGCTGTACCAGCCTCCAGGCTCGGCAGAGGCCCAAGACTCGGCCGTCGTTC
TCGACTCGTGGTCCGATGGTCCGGCGGTTCTACTCAGGGATTCGCGCTGGGCCGGAACATACCACCGCACATCCACCTAT
CCGATTGAGCGCTTCGACAAGCCGGGTGCAATCGATGCGCTGGCCAGGACCCGCGCATTGCAAGCCGAAATCGAGGATCC
GCAAACCGAGTTCCATGCACATCTGCGCGGCGTGGAGAGCGTCGTTCGCACCCCGCCCGTACCTCGCAAGATCTATGCCT
CAACTCCGGTCATCGCCCCCGACCTGGTCCAAAGTACGCGCCAGAGGCTGCAAGAGTTATCGCCGCGGACGCGTAAGGCG
CTGGCCGCCGATGCGGCGCGGCAAGCCTACGGACTGGATGACGCACAGCCCATCTCGCCGCGCACGACGTCAGCGATCCT
GAAAGACGCAGCGCGCCTGGATGCCTTGGGTCGCCCTCCCTTGAGTTGGGCGCCAACTTCTCACGCACGGCTGAAGCGTT
TTGTCACCAATGCCCGAACCAATGCAAGGCAGGCTTTCTGGTATCGACGCGGGTGGCGCCCGCCTGTCACGGTGGCGAGA
TGA

Upstream 100 bases:

>100_bases
GCGCCAATCATTCGTGATCCCACACACGACTTCGGCGAACCAGCAACGTTCGCCGAGCACCTTGCCACACTGGGTGCGGG
GTTCATGATCGGAGAGCGAC

Downstream 100 bases:

>100_bases
ACGCCCCTTCGATCAGGCGAACAGCTGCCTGATCGTTCAGCGGTACCCCGTCATCGGCCTGATGGGCTGATGGCGGCCCG
CCGAACACCTTTGCTGCGCA

Product: hypothetical protein

Products: NA

Alternate protein names: Type III Effector AvrPphE Family; Type III Effector Protein; Hypothethical Protein

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MGLCISKPAMSGSSVAASPEHPESPASEQVTAPTPLPEPSVPPSLQGLARLGAARARRRRSGKPTLQPHEVQQAAYQLGM
RLSGRPIEDVRDRQRLADATATVHETRLALHHGRGNIESDFRLSNGRSSTCSYLSYSFLSYWPGKHDINLMAGCALAVSA
GNCDQNAAINTRRHAARMEGGGQITNVCDQACAHMYALYQPPGSAEAQDSAVVLDSWSDGPAVLLRDSRWAGTYHRTSTY
PIERFDKPGAIDALARTRALQAEIEDPQTEFHAHLRGVESVVRTPPVPRKIYASTPVIAPDLVQSTRQRLQELSPRTRKA
LAADAARQAYGLDDAQPISPRTTSAILKDAARLDALGRPPLSWAPTSHARLKRFVTNARTNARQAFWYRRGWRPPVTVAR

Sequences:

>Translated_400_residues
MGLCISKPAMSGSSVAASPEHPESPASEQVTAPTPLPEPSVPPSLQGLARLGAARARRRRSGKPTLQPHEVQQAAYQLGM
RLSGRPIEDVRDRQRLADATATVHETRLALHHGRGNIESDFRLSNGRSSTCSYLSYSFLSYWPGKHDINLMAGCALAVSA
GNCDQNAAINTRRHAARMEGGGQITNVCDQACAHMYALYQPPGSAEAQDSAVVLDSWSDGPAVLLRDSRWAGTYHRTSTY
PIERFDKPGAIDALARTRALQAEIEDPQTEFHAHLRGVESVVRTPPVPRKIYASTPVIAPDLVQSTRQRLQELSPRTRKA
LAADAARQAYGLDDAQPISPRTTSAILKDAARLDALGRPPLSWAPTSHARLKRFVTNARTNARQAFWYRRGWRPPVTVAR
>Mature_399_residues
GLCISKPAMSGSSVAASPEHPESPASEQVTAPTPLPEPSVPPSLQGLARLGAARARRRRSGKPTLQPHEVQQAAYQLGMR
LSGRPIEDVRDRQRLADATATVHETRLALHHGRGNIESDFRLSNGRSSTCSYLSYSFLSYWPGKHDINLMAGCALAVSAG
NCDQNAAINTRRHAARMEGGGQITNVCDQACAHMYALYQPPGSAEAQDSAVVLDSWSDGPAVLLRDSRWAGTYHRTSTYP
IERFDKPGAIDALARTRALQAEIEDPQTEFHAHLRGVESVVRTPPVPRKIYASTPVIAPDLVQSTRQRLQELSPRTRKAL
AADAARQAYGLDDAQPISPRTTSAILKDAARLDALGRPPLSWAPTSHARLKRFVTNARTNARQAFWYRRGWRPPVTVAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43694; Mature: 43562

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLCISKPAMSGSSVAASPEHPESPASEQVTAPTPLPEPSVPPSLQGLARLGAARARRRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
SGKPTLQPHEVQQAAYQLGMRLSGRPIEDVRDRQRLADATATVHETRLALHHGRGNIESD
CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FRLSNGRSSTCSYLSYSFLSYWPGKHDINLMAGCALAVSAGNCDQNAAINTRRHAARMEG
CEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHEEECCCCCCCCCCCHHHHHHHHCC
GGQITNVCDQACAHMYALYQPPGSAEAQDSAVVLDSWSDGPAVLLRDSRWAGTYHRTSTY
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCC
PIERFDKPGAIDALARTRALQAEIEDPQTEFHAHLRGVESVVRTPPVPRKIYASTPVIAP
CHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCH
DLVQSTRQRLQELSPRTRKALAADAARQAYGLDDAQPISPRTTSAILKDAARLDALGRPP
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
LSWAPTSHARLKRFVTNARTNARQAFWYRRGWRPPVTVAR
CCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GLCISKPAMSGSSVAASPEHPESPASEQVTAPTPLPEPSVPPSLQGLARLGAARARRRR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
SGKPTLQPHEVQQAAYQLGMRLSGRPIEDVRDRQRLADATATVHETRLALHHGRGNIESD
CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
FRLSNGRSSTCSYLSYSFLSYWPGKHDINLMAGCALAVSAGNCDQNAAINTRRHAARMEG
CEECCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHEEECCCCCCCCCCCHHHHHHHHCC
GGQITNVCDQACAHMYALYQPPGSAEAQDSAVVLDSWSDGPAVLLRDSRWAGTYHRTSTY
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCC
PIERFDKPGAIDALARTRALQAEIEDPQTEFHAHLRGVESVVRTPPVPRKIYASTPVIAP
CHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCH
DLVQSTRQRLQELSPRTRKALAADAARQAYGLDDAQPISPRTTSAILKDAARLDALGRPP
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
LSWAPTSHARLKRFVTNARTNARQAFWYRRGWRPPVTVAR
CCCCCCHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA