| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
Click here to switch to the map view.
The map label for this gene is ptrB [C]
Identifier: 78045826
GI number: 78045826
Start: 313267
End: 315351
Strand: Reverse
Name: ptrB [C]
Synonym: XCV0270
Alternate gene names: 78045826
Gene position: 315351-313267 (Counterclockwise)
Preceding gene: 78045827
Following gene: 78045824
Centisome position: 6.09
GC content: 64.46
Gene sequence:
>2085_bases ATGCAACGCCTGCTTCTTGTTTCCAGCATGCTGCTCGCGCTGTCTGCGTGCAGCGACAAACCTGCGCCCGCTCCCGAGAA AGCGGCAGCACCTGCACCGGCGGCAGCAGCGCCCGCAGCGCCGCCTGCGCTGATCACCCGCGATGCGCTGTTCGGCAATC CCGAGCGGGCCAATGTCAGCATCAGTCCGGACGGCAAGTACCTCAGCTGGGTGGCGCCGTTGGCGGGCGTGCTCAATGTC TGGGTTGCGCCGGTGGATGCGCCCGACCAGGCGCGTGCGATCACCAAGGACACCGCACGCGGCATTCGCAATTACTTCTG GACCTACCAACCCAATACCTTGCTGTATCTGCGCGACAACGGCGGCGATGAAGATTTCCACCTGTTTTCGGTCAATTTGG CTGACGGCAGCAGCAAGGATCTCACTCCGTTCAAGAAGACCAATGCCGAGGTGTATCGGGTCAGCGCACAACATCCCGAA TCGATCATGGTCGGCATGAACGACCGCGATGCCAAGTGGCACGACCTGTACCGCGTGGACCTGGCCTCCGGCAAGCGCAC GCTGGTGCAGAAGAACACCGACAGCCTGGATGCGTACCTGCTCGATGGCGACTACCAGCTGCGCTACGCCACGCGCGCGA CAGACGATGCCGGCAGGGAGTTGCTGGTGCCCGATGGCAACCGCTGGAAGAGCGTGGACCGCATTCCGTTCGAGGACGTC ACCAATACCGCGCCGGAGGGCCTGACCGAGGATGGCAAGACGCTGTACATGCAGGATTCGCGCAACCGCGACACTGCAGC GCTGTATGCCATCGACACGGCCAGCAATACACGCACGCTGCTGTTCGAAAACCCGCGCGCCGACGTCGGCGCCACCTTGA ATGACCCCAAGACCGGGGCGGTGCAGGCGGTGTCCACCGACTACCTGCGCGAAGAATGGAAGCCGCTGGACAACGGCATT GCCGCGGATCTGCAGAAACTCAAATCCCTTGGCGGCGGCGATGCCAGCGTGGCCGCGCGCACGCTCGACGACCGCATCTG GATCGTGGGCTATTCCGCGGCAGAAACCCCGCTCACGTACTACCGCTACGATCGCGCCGATGGCGGCAAGCTGACCAAGC TGTTCTCCGCACGGCCCGCACTGGAGGGCAAGCCGCTGGTGCCGATGTGGCCACAGGAGCTGACCGCACGCGACGGCCTC AAGCTGATCAGCTACCTCACCCTGCCGGCCGAAGCCGATGCCAACCACGACGGCAAGGCCGACAAGCCGGTGCCGTTGGT GCTGTTCGTGCACGGCGGCCCGTGGGCGCGCGACAGCTACGGCTACGGGCCGTACGAACAATGGTTGGCCAACCGCGGCT ATGCGGTGTTGTCGGTGAACTTCCGTGGCTCCACCGGGTTCGGCAAGGCATTCACCAACGCCGGCAATGGCGAGTGGGCC GGCAAGATGCACGAGGACCTGCTCGACGCGGTGCAATGGGCGGTCAAGCAAGGCGTCACCAAACCGGACGAGGTCGCCAT CATGGGCGGCAGCTACGGCGGCTATGCCACGCTGGTCGGCATGACGTTTACCCCGGACGCCTTCAAATGCGGCGTGGATA TCGTGGGCCCGGCCAATCTCAACACCTTGCTCGGCACCGTGCCGCCCTACTGGGCCAGCTTCTACAAGCAGCTGACCCGG CGCATGGGCGACCCCGCCACCGAAGCCGGCAAGCAGTGGCTGACCGACCGTTCTCCGCTGACCCATGTCGACAAGATCAG CAAGCCGCTGTTGATCGGCCAGGGCGCCAACGACCCGCGCGTCAAGCAGGCCGAAAGCGACCAGATCGTCAACGCAATGA AGGCCAAGAACATTCCGGTCACCTACGTGCTGTTCCCCGACGAAGGCCACGGCTTCCGCCGCCCGGAAAACAGCAAGGCC TTCAACGCCGTGACCGAAAGCTTCCTGAGCCAGTGCCTGGGCGGCCGCGTGCAACCGATCGGTGCGGACCTGGAAGGCTC CAGCATCACCGTCCCGGAAGGCGCCGACAAGATCAACGGCCTGAGCGAGGCCTTGAAGACGCATACGCAGGCGATTCGGA AGTAA
Upstream 100 bases:
>100_bases GCGGCGCATGGCAGGGTGACCAACGGCACGTTCGCCTGCGCGCACGCTGCCGCTAGCGTGGCAAATCGGCCGGTTCGGCC GCCTTGCCACCGGAGTTCCC
Downstream 100 bases:
>100_bases GCCTGCGCGTGACTTGCTTTAGCCGGGAAACGAAAGCCGACGGCACTCTGCCGTCGGCCTTCGCAGGTGCTACGAAACAC CGGAGCGCGGCTCGGATTGT
Product: putative aminopeptidase precursor
Products: NA
Alternate protein names: AARE; Acyl-peptide hydrolase; APH; Acylaminoacyl-peptidase [H]
Number of amino acids: Translated: 694; Mature: 694
Protein sequence:
>694_residues MQRLLLVSSMLLALSACSDKPAPAPEKAAAPAPAAAAPAAPPALITRDALFGNPERANVSISPDGKYLSWVAPLAGVLNV WVAPVDAPDQARAITKDTARGIRNYFWTYQPNTLLYLRDNGGDEDFHLFSVNLADGSSKDLTPFKKTNAEVYRVSAQHPE SIMVGMNDRDAKWHDLYRVDLASGKRTLVQKNTDSLDAYLLDGDYQLRYATRATDDAGRELLVPDGNRWKSVDRIPFEDV TNTAPEGLTEDGKTLYMQDSRNRDTAALYAIDTASNTRTLLFENPRADVGATLNDPKTGAVQAVSTDYLREEWKPLDNGI AADLQKLKSLGGGDASVAARTLDDRIWIVGYSAAETPLTYYRYDRADGGKLTKLFSARPALEGKPLVPMWPQELTARDGL KLISYLTLPAEADANHDGKADKPVPLVLFVHGGPWARDSYGYGPYEQWLANRGYAVLSVNFRGSTGFGKAFTNAGNGEWA GKMHEDLLDAVQWAVKQGVTKPDEVAIMGGSYGGYATLVGMTFTPDAFKCGVDIVGPANLNTLLGTVPPYWASFYKQLTR RMGDPATEAGKQWLTDRSPLTHVDKISKPLLIGQGANDPRVKQAESDQIVNAMKAKNIPVTYVLFPDEGHGFRRPENSKA FNAVTESFLSQCLGGRVQPIGADLEGSSITVPEGADKINGLSEALKTHTQAIRK
Sequences:
>Translated_694_residues MQRLLLVSSMLLALSACSDKPAPAPEKAAAPAPAAAAPAAPPALITRDALFGNPERANVSISPDGKYLSWVAPLAGVLNV WVAPVDAPDQARAITKDTARGIRNYFWTYQPNTLLYLRDNGGDEDFHLFSVNLADGSSKDLTPFKKTNAEVYRVSAQHPE SIMVGMNDRDAKWHDLYRVDLASGKRTLVQKNTDSLDAYLLDGDYQLRYATRATDDAGRELLVPDGNRWKSVDRIPFEDV TNTAPEGLTEDGKTLYMQDSRNRDTAALYAIDTASNTRTLLFENPRADVGATLNDPKTGAVQAVSTDYLREEWKPLDNGI AADLQKLKSLGGGDASVAARTLDDRIWIVGYSAAETPLTYYRYDRADGGKLTKLFSARPALEGKPLVPMWPQELTARDGL KLISYLTLPAEADANHDGKADKPVPLVLFVHGGPWARDSYGYGPYEQWLANRGYAVLSVNFRGSTGFGKAFTNAGNGEWA GKMHEDLLDAVQWAVKQGVTKPDEVAIMGGSYGGYATLVGMTFTPDAFKCGVDIVGPANLNTLLGTVPPYWASFYKQLTR RMGDPATEAGKQWLTDRSPLTHVDKISKPLLIGQGANDPRVKQAESDQIVNAMKAKNIPVTYVLFPDEGHGFRRPENSKA FNAVTESFLSQCLGGRVQPIGADLEGSSITVPEGADKINGLSEALKTHTQAIRK >Mature_694_residues MQRLLLVSSMLLALSACSDKPAPAPEKAAAPAPAAAAPAAPPALITRDALFGNPERANVSISPDGKYLSWVAPLAGVLNV WVAPVDAPDQARAITKDTARGIRNYFWTYQPNTLLYLRDNGGDEDFHLFSVNLADGSSKDLTPFKKTNAEVYRVSAQHPE SIMVGMNDRDAKWHDLYRVDLASGKRTLVQKNTDSLDAYLLDGDYQLRYATRATDDAGRELLVPDGNRWKSVDRIPFEDV TNTAPEGLTEDGKTLYMQDSRNRDTAALYAIDTASNTRTLLFENPRADVGATLNDPKTGAVQAVSTDYLREEWKPLDNGI AADLQKLKSLGGGDASVAARTLDDRIWIVGYSAAETPLTYYRYDRADGGKLTKLFSARPALEGKPLVPMWPQELTARDGL KLISYLTLPAEADANHDGKADKPVPLVLFVHGGPWARDSYGYGPYEQWLANRGYAVLSVNFRGSTGFGKAFTNAGNGEWA GKMHEDLLDAVQWAVKQGVTKPDEVAIMGGSYGGYATLVGMTFTPDAFKCGVDIVGPANLNTLLGTVPPYWASFYKQLTR RMGDPATEAGKQWLTDRSPLTHVDKISKPLLIGQGANDPRVKQAESDQIVNAMKAKNIPVTYVLFPDEGHGFRRPENSKA FNAVTESFLSQCLGGRVQPIGADLEGSSITVPEGADKINGLSEALKTHTQAIRK
Specific function: This enzyme catalyzes the hydrolysis of the N-terminal peptide bond of an N-acetylated peptide to generate an N- acetylated amino acid and a peptide with a free N-terminus [H]
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S9C family [H]
Homologues:
Organism=Homo sapiens, GI23510451, Length=231, Percent_Identity=30.7359307359307, Blast_Score=95, Evalue=2e-19, Organism=Homo sapiens, GI194394146, Length=349, Percent_Identity=26.0744985673352, Blast_Score=80, Evalue=5e-15, Organism=Homo sapiens, GI18450280, Length=353, Percent_Identity=25.7790368271955, Blast_Score=72, Evalue=3e-12, Organism=Homo sapiens, GI37577089, Length=353, Percent_Identity=25.7790368271955, Blast_Score=71, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25144537, Length=663, Percent_Identity=38.0090497737557, Blast_Score=442, Evalue=1e-124, Organism=Caenorhabditis elegans, GI25144540, Length=411, Percent_Identity=46.2287104622871, Blast_Score=362, Evalue=1e-100, Organism=Caenorhabditis elegans, GI25144543, Length=559, Percent_Identity=34.7048300536673, Blast_Score=323, Evalue=2e-88, Organism=Caenorhabditis elegans, GI17552908, Length=230, Percent_Identity=30, Blast_Score=107, Evalue=3e-23, Organism=Caenorhabditis elegans, GI25149159, Length=250, Percent_Identity=29.6, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI45551969, Length=245, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=9e-16, Organism=Drosophila melanogaster, GI45550825, Length=245, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=1e-15, Organism=Drosophila melanogaster, GI45553511, Length=245, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011042 - InterPro: IPR001375 - InterPro: IPR004106 [H]
Pfam domain/function: PF00326 Peptidase_S9 [H]
EC number: =3.4.19.1 [H]
Molecular weight: Translated: 75455; Mature: 75455
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00698 GLYCOSYL_HYDROL_F9_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRLLLVSSMLLALSACSDKPAPAPEKAAAPAPAAAAPAAPPALITRDALFGNPERANVS CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEHHHHCCCCCCCEEE ISPDGKYLSWVAPLAGVLNVWVAPVDAPDQARAITKDTARGIRNYFWTYQPNTLLYLRDN ECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEEECCCEEEEEECC GGDEDFHLFSVNLADGSSKDLTPFKKTNAEVYRVSAQHPESIMVGMNDRDAKWHDLYRVD CCCCCEEEEEEEECCCCCCCCCCHHHCCCEEEEEECCCCCEEEEECCCCCCCHHHEEEEE LASGKRTLVQKNTDSLDAYLLDGDYQLRYATRATDDAGRELLVPDGNRWKSVDRIPFEDV CCCCCEEEEECCCCCCEEEEECCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCHHH TNTAPEGLTEDGKTLYMQDSRNRDTAALYAIDTASNTRTLLFENPRADVGATLNDPKTGA CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC VQAVSTDYLREEWKPLDNGIAADLQKLKSLGGGDASVAARTLDDRIWIVGYSAAETPLTY EEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHEECCCEEEEEEECCCCCCEEE YRYDRADGGKLTKLFSARPALEGKPLVPMWPQELTARDGLKLISYLTLPAEADANHDGKA EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCEEHHEEECCCCCCCCCCCCC DKPVPLVLFVHGGPWARDSYGYGPYEQWLANRGYAVLSVNFRGSTGFGKAFTNAGNGEWA CCCEEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCHHHCCCCCCCCC GKMHEDLLDAVQWAVKQGVTKPDEVAIMGGSYGGYATLVGMTFTPDAFKCGVDIVGPANL HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEEECCCHHHCCEEEECCCCC NTLLGTVPPYWASFYKQLTRRMGDPATEAGKQWLTDRSPLTHVDKISKPLLIGQGANDPR HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCCCC VKQAESDQIVNAMKAKNIPVTYVLFPDEGHGFRRPENSKAFNAVTESFLSQCLGGRVQPI CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC GADLEGSSITVPEGADKINGLSEALKTHTQAIRK CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MQRLLLVSSMLLALSACSDKPAPAPEKAAAPAPAAAAPAAPPALITRDALFGNPERANVS CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEHHHHCCCCCCCEEE ISPDGKYLSWVAPLAGVLNVWVAPVDAPDQARAITKDTARGIRNYFWTYQPNTLLYLRDN ECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCEEEECCCEEEEEECC GGDEDFHLFSVNLADGSSKDLTPFKKTNAEVYRVSAQHPESIMVGMNDRDAKWHDLYRVD CCCCCEEEEEEEECCCCCCCCCCHHHCCCEEEEEECCCCCEEEEECCCCCCCHHHEEEEE LASGKRTLVQKNTDSLDAYLLDGDYQLRYATRATDDAGRELLVPDGNRWKSVDRIPFEDV CCCCCEEEEECCCCCCEEEEECCCEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCCHHH TNTAPEGLTEDGKTLYMQDSRNRDTAALYAIDTASNTRTLLFENPRADVGATLNDPKTGA CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCC VQAVSTDYLREEWKPLDNGIAADLQKLKSLGGGDASVAARTLDDRIWIVGYSAAETPLTY EEHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHEECCCEEEEEEECCCCCCEEE YRYDRADGGKLTKLFSARPALEGKPLVPMWPQELTARDGLKLISYLTLPAEADANHDGKA EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCEEHHEEECCCCCCCCCCCCC DKPVPLVLFVHGGPWARDSYGYGPYEQWLANRGYAVLSVNFRGSTGFGKAFTNAGNGEWA CCCEEEEEEECCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCHHHCCCCCCCCC GKMHEDLLDAVQWAVKQGVTKPDEVAIMGGSYGGYATLVGMTFTPDAFKCGVDIVGPANL HHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEEECCCHHHCCEEEECCCCC NTLLGTVPPYWASFYKQLTRRMGDPATEAGKQWLTDRSPLTHVDKISKPLLIGQGANDPR HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCCCC VKQAESDQIVNAMKAKNIPVTYVLFPDEGHGFRRPENSKAFNAVTESFLSQCLGGRVQPI CCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC GADLEGSSITVPEGADKINGLSEALKTHTQAIRK CCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10382966; 12037315 [H]