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The map label for this gene is xynB [H]

Identifier: 78045701

GI number: 78045701

Start: 173935

End: 175011

Strand: Reverse

Name: xynB [H]

Synonym: XCV0145

Alternate gene names: 78045701

Gene position: 175011-173935 (Counterclockwise)

Preceding gene: 78045712

Following gene: 78045700

Centisome position: 3.38

GC content: 69.36

Gene sequence:

>1077_bases
ATGGAACAGACACGCCAAACGCGGGCTTTGACCGCGCTTTCGCGCGCCACGCGGCATGGCCTGGCGCTCGTTGTGCTGGG
CGTGCTGCTGGCGCGCCCCGCGCCGGCGGCCGAGCGACCGAGCGCCGACACTGCCGCCGAACAGGCCAGCCGGATCGCGC
TGTGGCCAACGCCGCTGGCACCGGGGGATACGGCGCTGCCGCAACCGCAGCGCATCGTCGAGCGCAGCAGCGACCCGGCG
CAGCCGGATCGCTACATCCAGCAGGTCAGTACGCCGTACCTGGTGGTCTATCGGCCCAAACAGCCCAATGGCACCGCCCT
GCTGGTGACGCCTGGCGGCGGCTATCAACGCATCGTGCTGGACAACGAGGGCAGCGCGCTGGTGCCCGGTTTCGTCGACA
CCGCCGGCATCACCCTGTTCGTGCTGCGCTACCGGCTGCCGGGCGAAGGCCACCCGAACGGCGCCGACGTGCCGCTGGCC
GATGCGCAACGTGCCTTGCGGCTGATCCGCGCCAACGCGGCGCGCTATGGCATCGATGCGCAGCGCGTGGGCGTGATGGG
CTTTTCGGCCGGCGGCCATGTCGCCGCCAGCCTGGGCACGCGTTACGCCGCGCAGATGTATCCGCCCATCGACGCAGCCG
ATGCACTGAGCGCACGACCGGACTTCCAGTTGCTGATCTACCCGGTGATCGACATGGATAGCGCCAACGCACACAAAGGC
TCGCGCGAACGCCTGATCGGCAGCGCCCCGAGCCAGGCGCAGGTGCAGGCCTATTCGCCGCAGCTGCACGTGGACGCGCA
CACGCCACCCACTTTTTTGCTGCATGCGCAGGACGACAGCGTGGTGCCGGTGCGCAACAGCCTGCTGATGCACGCTGCGC
TGCTGCGCTCCGGGGTGCCCAGCGAGCTGCACGTATTCCCGCAGGGCGGCCATGGTTTCGGAGCTGCCAGCGGCAGCGGT
CTTACCGTGTCCGCATGGCCGCAGCTGGCGCAAGCCTGGATCGCGCATGTCACCAAGCCGCAGCCGCCTGTAGCCAAGCC
TGCACCACCTTCACCGGCGAAGGAGATGGGGCGATGA

Upstream 100 bases:

>100_bases
CGACAGCGGCACGGTGTGCTGTATATGGTAAACCGGTGTCATTGGCAATGTGCACTGCGGCATTGTGGTCGCGGTGACGA
AGTGGCCCTGGGAGGGGTGA

Downstream 100 bases:

>100_bases
CGACCCAAGCCACCCCCGACACGCGACGCCGCACGCTGCTGCGTGGTGGCCTGCTCGCGACTGCGGCAGCAACGCTTCCC
GGCTTCGCTGCCGCGGCCGT

Product: putative esterase/lipase precursor

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MEQTRQTRALTALSRATRHGLALVVLGVLLARPAPAAERPSADTAAEQASRIALWPTPLAPGDTALPQPQRIVERSSDPA
QPDRYIQQVSTPYLVVYRPKQPNGTALLVTPGGGYQRIVLDNEGSALVPGFVDTAGITLFVLRYRLPGEGHPNGADVPLA
DAQRALRLIRANAARYGIDAQRVGVMGFSAGGHVAASLGTRYAAQMYPPIDAADALSARPDFQLLIYPVIDMDSANAHKG
SRERLIGSAPSQAQVQAYSPQLHVDAHTPPTFLLHAQDDSVVPVRNSLLMHAALLRSGVPSELHVFPQGGHGFGAASGSG
LTVSAWPQLAQAWIAHVTKPQPPVAKPAPPSPAKEMGR

Sequences:

>Translated_358_residues
MEQTRQTRALTALSRATRHGLALVVLGVLLARPAPAAERPSADTAAEQASRIALWPTPLAPGDTALPQPQRIVERSSDPA
QPDRYIQQVSTPYLVVYRPKQPNGTALLVTPGGGYQRIVLDNEGSALVPGFVDTAGITLFVLRYRLPGEGHPNGADVPLA
DAQRALRLIRANAARYGIDAQRVGVMGFSAGGHVAASLGTRYAAQMYPPIDAADALSARPDFQLLIYPVIDMDSANAHKG
SRERLIGSAPSQAQVQAYSPQLHVDAHTPPTFLLHAQDDSVVPVRNSLLMHAALLRSGVPSELHVFPQGGHGFGAASGSG
LTVSAWPQLAQAWIAHVTKPQPPVAKPAPPSPAKEMGR
>Mature_358_residues
MEQTRQTRALTALSRATRHGLALVVLGVLLARPAPAAERPSADTAAEQASRIALWPTPLAPGDTALPQPQRIVERSSDPA
QPDRYIQQVSTPYLVVYRPKQPNGTALLVTPGGGYQRIVLDNEGSALVPGFVDTAGITLFVLRYRLPGEGHPNGADVPLA
DAQRALRLIRANAARYGIDAQRVGVMGFSAGGHVAASLGTRYAAQMYPPIDAADALSARPDFQLLIYPVIDMDSANAHKG
SRERLIGSAPSQAQVQAYSPQLHVDAHTPPTFLLHAQDDSVVPVRNSLLMHAALLRSGVPSELHVFPQGGHGFGAASGSG
LTVSAWPQLAQAWIAHVTKPQPPVAKPAPPSPAKEMGR

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17552908, Length=189, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 37903; Mature: 37903

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQTRQTRALTALSRATRHGLALVVLGVLLARPAPAAERPSADTAAEQASRIALWPTPLA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCEEEEECCCCC
PGDTALPQPQRIVERSSDPAQPDRYIQQVSTPYLVVYRPKQPNGTALLVTPGGGYQRIVL
CCCCCCCCHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCEEEEEE
DNEGSALVPGFVDTAGITLFVLRYRLPGEGHPNGADVPLADAQRALRLIRANAARYGIDA
ECCCCEECCCCHHHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
QRVGVMGFSAGGHVAASLGTRYAAQMYPPIDAADALSARPDFQLLIYPVIDMDSANAHKG
HHEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEEEECCCCCCCCC
SRERLIGSAPSQAQVQAYSPQLHVDAHTPPTFLLHAQDDSVVPVRNSLLMHAALLRSGVP
CHHHHCCCCCCCCEEEEECCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
SELHVFPQGGHGFGAASGSGLTVSAWPQLAQAWIAHVTKPQPPVAKPAPPSPAKEMGR
CCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MEQTRQTRALTALSRATRHGLALVVLGVLLARPAPAAERPSADTAAEQASRIALWPTPLA
CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCEEEEECCCCC
PGDTALPQPQRIVERSSDPAQPDRYIQQVSTPYLVVYRPKQPNGTALLVTPGGGYQRIVL
CCCCCCCCHHHHHHCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCEEEEECCCCEEEEEE
DNEGSALVPGFVDTAGITLFVLRYRLPGEGHPNGADVPLADAQRALRLIRANAARYGIDA
ECCCCEECCCCHHHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH
QRVGVMGFSAGGHVAASLGTRYAAQMYPPIDAADALSARPDFQLLIYPVIDMDSANAHKG
HHEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCCCCEEEEEEEEECCCCCCCCC
SRERLIGSAPSQAQVQAYSPQLHVDAHTPPTFLLHAQDDSVVPVRNSLLMHAALLRSGVP
CHHHHCCCCCCCCEEEEECCEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
SELHVFPQGGHGFGAASGSGLTVSAWPQLAQAWIAHVTKPQPPVAKPAPPSPAKEMGR
CCEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]