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The map label for this gene is prt1 [H]

Identifier: 78045631

GI number: 78045631

Start: 85586

End: 86650

Strand: Reverse

Name: prt1 [H]

Synonym: XCV0075

Alternate gene names: 78045631

Gene position: 86650-85586 (Counterclockwise)

Preceding gene: 78045632

Following gene: 78045630

Centisome position: 1.67

GC content: 68.83

Gene sequence:

>1065_bases
ATGTCCGCGTTTGTCAGCGCGCGCCGCGCCGGGATCCTGCCGCCGTACCTGCTCGAACATGTGGCGCAGGCTGCGCCCGC
ACACGCGCGCCAGTGCGCGCTGCTGTCGCGGCAAATCACCGCCCAGCTACGGCAGCAGCGCGCACTGGGGCTGCTGGCAC
GCGCCGATGCGCCGGCGGCAGATGCCAAGGCGCAACAGACCGCCCCGGCGGTGCAGCGGCGCATCTACGATGCCCAGCGA
GGCACCGCCCTGCCCGGCACCCTGGTGCGTGACGAAGGTGCCGCCGCCACCCAGGACGTGGCGGTGACCGAAGCCTACGA
CTACCTGGGCGCGACCCACGATTTTTTCCAGACCGTGTACGGGCGCAATTCGATCGACGCGGCGGGCATGCCGCTGATCG
GCAGCGTGCATTACGAGCGTGGCTACGACAACGCGTTCTGGAACGGCGAGCAGATGGTGTTCGGCGACGGCGAGGTGTTC
AACCGCTTCACCATCGCCCTGGATGTGGTCGGGCACGAGCTCACCCACGGCGTCACCGAGCGCACCGCCAACCTGATTTA
TCAAGGCCAGTCCGGTGCCTTGAACGAATCGATTTCGGACGTGTTCGGCGTGCTGATCAAGCAGTACACGCTGCGCCAGA
GCGCCGACCAGGCCGACTGGATCATCGGCGCCGGCTTGCTGATGCCCGGCATCAAGGGCGTGGGCCTGCGCTCGATGCAG
GCGCCCGGCAGCGCGTACGATGACCCGGCCCTGGGCAAGGACCCGCAGCCGGCGACCATGGCCGGCTATGTCGACACGCA
AGAGGACGATGGCGGCGTGCACTACAACTCCGGCATTCCCAATCACGCGTTCTATCGGGCCGCCGTCGCGATCGGTGGGG
CGGCGTGGGAGAAGACCGGGCGCATCTGGTATCGCGCGCTCACCGGTGGCGAGCTGGCCGCCGGCGCGGACTTCGCCACC
TTCGCCGCGCTGACCGTCGAGGTGGCCAGCGCCGAGTACGGCGCCAACAGCAGCGAAACCGCAGCAGTGCAGCAAGCCTG
GCGCGACGTGGGCGTGCTCGCATGA

Upstream 100 bases:

>100_bases
CCCATGCGATCCGCACTGCACGCGGCCACCGGCGCCGGCTAACGAATTCCTAAAGCCGGCGCCCGCATAGTCGCTGGCGC
AGCCATTGTGGAGGTCGCTT

Downstream 100 bases:

>100_bases
GCCCACAACGGCCACCGGTGGAAACCGGCGTGACCTTGCGACTGGCGCGCGAAGGCGGGGTGGCGGCGTTTCCGGCCATG
CGCCGCGAGCGCCAGTTGGC

Product: Zinc metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MSAFVSARRAGILPPYLLEHVAQAAPAHARQCALLSRQITAQLRQQRALGLLARADAPAADAKAQQTAPAVQRRIYDAQR
GTALPGTLVRDEGAAATQDVAVTEAYDYLGATHDFFQTVYGRNSIDAAGMPLIGSVHYERGYDNAFWNGEQMVFGDGEVF
NRFTIALDVVGHELTHGVTERTANLIYQGQSGALNESISDVFGVLIKQYTLRQSADQADWIIGAGLLMPGIKGVGLRSMQ
APGSAYDDPALGKDPQPATMAGYVDTQEDDGGVHYNSGIPNHAFYRAAVAIGGAAWEKTGRIWYRALTGGELAAGADFAT
FAALTVEVASAEYGANSSETAAVQQAWRDVGVLA

Sequences:

>Translated_354_residues
MSAFVSARRAGILPPYLLEHVAQAAPAHARQCALLSRQITAQLRQQRALGLLARADAPAADAKAQQTAPAVQRRIYDAQR
GTALPGTLVRDEGAAATQDVAVTEAYDYLGATHDFFQTVYGRNSIDAAGMPLIGSVHYERGYDNAFWNGEQMVFGDGEVF
NRFTIALDVVGHELTHGVTERTANLIYQGQSGALNESISDVFGVLIKQYTLRQSADQADWIIGAGLLMPGIKGVGLRSMQ
APGSAYDDPALGKDPQPATMAGYVDTQEDDGGVHYNSGIPNHAFYRAAVAIGGAAWEKTGRIWYRALTGGELAAGADFAT
FAALTVEVASAEYGANSSETAAVQQAWRDVGVLA
>Mature_353_residues
SAFVSARRAGILPPYLLEHVAQAAPAHARQCALLSRQITAQLRQQRALGLLARADAPAADAKAQQTAPAVQRRIYDAQRG
TALPGTLVRDEGAAATQDVAVTEAYDYLGATHDFFQTVYGRNSIDAAGMPLIGSVHYERGYDNAFWNGEQMVFGDGEVFN
RFTIALDVVGHELTHGVTERTANLIYQGQSGALNESISDVFGVLIKQYTLRQSADQADWIIGAGLLMPGIKGVGLRSMQA
PGSAYDDPALGKDPQPATMAGYVDTQEDDGGVHYNSGIPNHAFYRAAVAIGGAAWEKTGRIWYRALTGGELAAGADFATF
AALTVEVASAEYGANSSETAAVQQAWRDVGVLA

Specific function: Unknown

COG id: COG3227

COG function: function code E; Zinc metalloprotease (elastase)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013856
- InterPro:   IPR001570 [H]

Pfam domain/function: PF01447 Peptidase_M4; PF02868 Peptidase_M4_C [H]

EC number: NA

Molecular weight: Translated: 37607; Mature: 37476

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAFVSARRAGILPPYLLEHVAQAAPAHARQCALLSRQITAQLRQQRALGLLARADAPAA
CCCHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DAKAQQTAPAVQRRIYDAQRGTALPGTLVRDEGAAATQDVAVTEAYDYLGATHDFFQTVY
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
GRNSIDAAGMPLIGSVHYERGYDNAFWNGEQMVFGDGEVFNRFTIALDVVGHELTHGVTE
CCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHEEEEHHHHHHHHHHHHHH
RTANLIYQGQSGALNESISDVFGVLIKQYTLRQSADQADWIIGAGLLMPGIKGVGLRSMQ
HHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHCCCCCCCCCCCC
APGSAYDDPALGKDPQPATMAGYVDTQEDDGGVHYNSGIPNHAFYRAAVAIGGAAWEKTG
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCHHHHHCC
RIWYRALTGGELAAGADFATFAALTVEVASAEYGANSSETAAVQQAWRDVGVLA
CEEEEEECCCCCCCCCCHHHHHHHHHEEHHHHCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SAFVSARRAGILPPYLLEHVAQAAPAHARQCALLSRQITAQLRQQRALGLLARADAPAA
CCHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DAKAQQTAPAVQRRIYDAQRGTALPGTLVRDEGAAATQDVAVTEAYDYLGATHDFFQTVY
CCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
GRNSIDAAGMPLIGSVHYERGYDNAFWNGEQMVFGDGEVFNRFTIALDVVGHELTHGVTE
CCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCHHHHHEEEEHHHHHHHHHHHHHH
RTANLIYQGQSGALNESISDVFGVLIKQYTLRQSADQADWIIGAGLLMPGIKGVGLRSMQ
HHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECHHHHCCCCCCCCCCCC
APGSAYDDPALGKDPQPATMAGYVDTQEDDGGVHYNSGIPNHAFYRAAVAIGGAAWEKTG
CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCHHHHHHHHHHCCHHHHHCC
RIWYRALTGGELAAGADFATFAALTVEVASAEYGANSSETAAVQQAWRDVGVLA
CEEEEEECCCCCCCCCCHHHHHHHHHEEHHHHCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1917878 [H]