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The map label for this gene is ypsC [H]

Identifier: 78044996

GI number: 78044996

Start: 85120

End: 86331

Strand: Direct

Name: ypsC [H]

Synonym: CHY_0099

Alternate gene names: 78044996

Gene position: 85120-86331 (Clockwise)

Preceding gene: 78042642

Following gene: 78044501

Centisome position: 3.54

GC content: 44.64

Gene sequence:

>1212_bases
ATGGCTTCTTTCCGGAGTACTGGCTTTAGCAGGGGCGATAGCGGTCTTATACTTACGGCAACTGGAGGGGGCTTTGTGAA
ACTAAGCTTAATTGCTACTGCAGCTTTTGGTTTGGAGTCGGTGGTAGCGTTAGAATTAAAAAATCTTGGGATTAACGATG
TCATGGTGGAAAATGGGAAGGTGCAGTTTTTCGGGGATTATTCTACTATTGCCCGGACCAATCTCTGGCTTAGAACTGCT
GACAGGGTTTTAATAAAAGTAGGGGAGTTTTATGCTGAAAGCTTTGAGGAGCTTTTTGAAAAAACCAAAGCATTACCCTG
GGAGGAGTTTTTACCGAAAAACGCTAATTTTCCGGTAACCGGTAAAGCTGTCAGGTCTAAGCTTATGAGCGTTTCCGACT
GTCAGGCAATTGTAAAAAAAGCCATTGTGGAGAGATTAAAGGGTAAGTACCGTCTTAACTGGTTTCCGGAGGATGGGCCG
GAGTTTAAGATCGAAGTTTCGCTTTTAAAAGACCTGGCTACCCTGACCATTGACACCAGCGGTGCTGGTTTACATAAACG
GGGTTACCGAAAATTAACCGGCCGGGCACCTTTGCGGGAAACTCTGGCGGCAGCTCTGGTAATTCTTTCCCGCTGGCGGG
AAGACAGAGCTTTTTCTGACCCTTTTTGCGGCTCCGGCACCATACCGGTGGAAGCGGCTTTAATTGGGCTAAATATTGCA
CCGGGAATAAACCGGGAGTTTGCTTTTATGAAATGGCCCTGGTTTCCTAAAAAAGAATTAGAGCGTGCCCGGGAGGAGGC
AAGGAGCAAACGGCGTAATCTAAAGCTTTTAATTTACGGCAGCGATATATCCGAAGATGAATTAAGTTATGCCCGCTATC
ACGCTAAAGCGGCAGGGGTAGAAAAAAGTATCCGGTTTTTTAAAAAAGATTTCCGGGAAGTTAAATTCACGGAAGAGTAC
GGCTGGTTAATTTCTAATTTACCCTACGGGGAGAGAATTGGGGATGTGCGGGAAGTGGAGAAACTGTACCGGGAATTAAA
AATCTTAAGGGAGAAACTTCCCACCTGGTCTTTTTATTTTTTAACCAGTCATCCGGCTTTTGAAAAACTTTATGGCAGAA
AAGCGGATAAACGGCGTAAGCTTTATAACGGGAAGATTGAAACCCAGTTTTATCAGTTCTTTGGGCCCAAACCACCAAAA
ATTATACTTTAA

Upstream 100 bases:

>100_bases
GAAGGGTAAATGCTTTTTTACATATCATGTCCCGGGCGGGTTTTTCAGCGGGGCCTGTAGTAATGGGAGCGGTAGCTTCG
TTATATGGTTTAAAACTTTT

Downstream 100 bases:

>100_bases
ATTATAATAATTTAGGGTATAATTATTATGAGGTGGTTTTATGAAATTTGTTAACCGGGACGAAGAGCTTTCCTTTTTAA
AAAAAGAATATTACCGTCAG

Product: putative methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MASFRSTGFSRGDSGLILTATGGGFVKLSLIATAAFGLESVVALELKNLGINDVMVENGKVQFFGDYSTIARTNLWLRTA
DRVLIKVGEFYAESFEELFEKTKALPWEEFLPKNANFPVTGKAVRSKLMSVSDCQAIVKKAIVERLKGKYRLNWFPEDGP
EFKIEVSLLKDLATLTIDTSGAGLHKRGYRKLTGRAPLRETLAAALVILSRWREDRAFSDPFCGSGTIPVEAALIGLNIA
PGINREFAFMKWPWFPKKELERAREEARSKRRNLKLLIYGSDISEDELSYARYHAKAAGVEKSIRFFKKDFREVKFTEEY
GWLISNLPYGERIGDVREVEKLYRELKILREKLPTWSFYFLTSHPAFEKLYGRKADKRRKLYNGKIETQFYQFFGPKPPK
IIL

Sequences:

>Translated_403_residues
MASFRSTGFSRGDSGLILTATGGGFVKLSLIATAAFGLESVVALELKNLGINDVMVENGKVQFFGDYSTIARTNLWLRTA
DRVLIKVGEFYAESFEELFEKTKALPWEEFLPKNANFPVTGKAVRSKLMSVSDCQAIVKKAIVERLKGKYRLNWFPEDGP
EFKIEVSLLKDLATLTIDTSGAGLHKRGYRKLTGRAPLRETLAAALVILSRWREDRAFSDPFCGSGTIPVEAALIGLNIA
PGINREFAFMKWPWFPKKELERAREEARSKRRNLKLLIYGSDISEDELSYARYHAKAAGVEKSIRFFKKDFREVKFTEEY
GWLISNLPYGERIGDVREVEKLYRELKILREKLPTWSFYFLTSHPAFEKLYGRKADKRRKLYNGKIETQFYQFFGPKPPK
IIL
>Mature_402_residues
ASFRSTGFSRGDSGLILTATGGGFVKLSLIATAAFGLESVVALELKNLGINDVMVENGKVQFFGDYSTIARTNLWLRTAD
RVLIKVGEFYAESFEELFEKTKALPWEEFLPKNANFPVTGKAVRSKLMSVSDCQAIVKKAIVERLKGKYRLNWFPEDGPE
FKIEVSLLKDLATLTIDTSGAGLHKRGYRKLTGRAPLRETLAAALVILSRWREDRAFSDPFCGSGTIPVEAALIGLNIAP
GINREFAFMKWPWFPKKELERAREEARSKRRNLKLLIYGSDISEDELSYARYHAKAAGVEKSIRFFKKDFREVKFTEEYG
WLISNLPYGERIGDVREVEKLYRELKILREKLPTWSFYFLTSHPAFEKLYGRKADKRRKLYNGKIETQFYQFFGPKPPKI
IL

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=371, Percent_Identity=32.3450134770889, Blast_Score=171, Evalue=6e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 46051; Mature: 45920

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS51165 THUMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASFRSTGFSRGDSGLILTATGGGFVKLSLIATAAFGLESVVALELKNLGINDVMVENGK
CCCCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
VQFFGDYSTIARTNLWLRTADRVLIKVGEFYAESFEELFEKTKALPWEEFLPKNANFPVT
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC
GKAVRSKLMSVSDCQAIVKKAIVERLKGKYRLNWFPEDGPEFKIEVSLLKDLATLTIDTS
CHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEHHHHHHHHHEEEECC
GAGLHKRGYRKLTGRAPLRETLAAALVILSRWREDRAFSDPFCGSGTIPVEAALIGLNIA
CCCCHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEC
PGINREFAFMKWPWFPKKELERAREEARSKRRNLKLLIYGSDISEDELSYARYHAKAAGV
CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHH
EKSIRFFKKDFREVKFTEEYGWLISNLPYGERIGDVREVEKLYRELKILREKLPTWSFYF
HHHHHHHHHHHHHCEECHHHCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEE
LTSHPAFEKLYGRKADKRRKLYNGKIETQFYQFFGPKPPKIIL
EECCCHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ASFRSTGFSRGDSGLILTATGGGFVKLSLIATAAFGLESVVALELKNLGINDVMVENGK
CCCCCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
VQFFGDYSTIARTNLWLRTADRVLIKVGEFYAESFEELFEKTKALPWEEFLPKNANFPVT
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCC
GKAVRSKLMSVSDCQAIVKKAIVERLKGKYRLNWFPEDGPEFKIEVSLLKDLATLTIDTS
CHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEHHHHHHHHHEEEECC
GAGLHKRGYRKLTGRAPLRETLAAALVILSRWREDRAFSDPFCGSGTIPVEAALIGLNIA
CCCCHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEC
PGINREFAFMKWPWFPKKELERAREEARSKRRNLKLLIYGSDISEDELSYARYHAKAAGV
CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHHH
EKSIRFFKKDFREVKFTEEYGWLISNLPYGERIGDVREVEKLYRELKILREKLPTWSFYF
HHHHHHHHHHHHHCEECHHHCHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEE
LTSHPAFEKLYGRKADKRRKLYNGKIETQFYQFFGPKPPKIIL
EECCCHHHHHHCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 2423526 [H]