| Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
|---|---|
| Accession | NC_007503 |
| Length | 2,401,520 |
Click here to switch to the map view.
The map label for this gene is hsdM [C]
Identifier: 78044904
GI number: 78044904
Start: 733923
End: 736367
Strand: Direct
Name: hsdM [C]
Synonym: CHY_0830
Alternate gene names: 78044904
Gene position: 733923-736367 (Clockwise)
Preceding gene: 78044169
Following gene: 78043287
Centisome position: 30.56
GC content: 36.93
Gene sequence:
>2445_bases ATGGCAGTGGCAACTGAAAAAATAACTTTAGCGCAGTTAGAGACCCATCTTTTTAAAGCAGCAGATATTTTGCGGGGAAA AATGGATGCTTCCGAATACAAGGAATACATCTTTGGTATGCTTTTTTTAAAATATACCTCAGATGTTTTTGCTGCCAAGA AATTAGAGCTGGAAAACATGTATAAAAACTTAGGCTTTTCTGATGAACAAATTAAAGAATTAACGGAAGACCCCAATTCA TACGATATTTTTTATGTACCTCCAAAAGCCCGCTGGGAGTACATACTTAACTTAAAAGAGGACGTAGGAAACCAGTTGAA TAAAGCGCTTTCTGCTTTAGAGGAAGCAAATCCTGAGTTAGATGGGGTTTTAAAGCATATTGATTTCAACGCTACCAAAG GAAAAATAAAGCTTAAAGACCAGCAGTTAATTGACCTTATCCATCACTTCAATAAATACACTCTGACTCCGGAAAGCTTT GAGTTTCCAGATTTGTTGGGTGCAGCATATGAGTATCTTTTAAAAGAATTTGCTGATTCGGCCGGGAAAAAAGGCGGCGA GTTTTATACTCCTGCCGGTGTCAAAAAACTGATGGTAAGGCTGGTTAAACCCGGCGAGAACATGACCGTTTACGACCCGA CGGTTGGTTCGGGAGGCTTTTTGATTGAAGCTTTTCACTATGTAGAAGAGAAAGGGCAGGATCGTTATAACTTAGGACTT TATGGGCAGGAGTTAAATGGACTCACTTGGTCGATTTGTAAAATGAACATGATTTTACACGGTATCTCAGATGCCCATAT TGAAAATGAAGATGTTTTAACCACTCCGATGTTTTTAGAAAACGGGTATATCAAGCGCTTTGACCGGGTTCTGGCCAATC CTCCTTTTTCCGAAAATTATACCCGGGCAAACATGCAGTATCCAGAGCGGTTTAAATACGGTTTTACTCCCGAAACCGGC AAAAAAGCAGACTTAATGTTTTTACAGCATATGATTGCCAGCTTAAAAGATGATGGGATTATGGCCACGGTCATGCCTCA CGGCGTTTTGTTCCGGGGCGGACAGGAAAAGGTAATCCGGGAAGGGATTGTTAAAGAAGGTATAATTGAAGCAATCATTG GGCTTCCGCCTAAGCTTTTTTACAATACCGGCATCCCGGCCTGTATTATAGTGATTAATAAAAATAAACCCGAACATTTA AAAAATAAAATTTTATTTATCAATGCCGACCGGGAATATGGCGAAGGAAGAAATCAAAACTTCTTACGCCCTGAAGATAT CGAAAAAATTGTAAATGTTTTTGATGAGAAAAAGGAAATACCTGGCTATTCAAGACTGGTGGATATAAAAGAAATTGAAG AAAATGACTTTAATCTTAACATCAGAAGATATGTAGATAATTCTCCAGAGCCAGAGATAGAAGATGTGCGGGCCCATCTT ACCGGTGGGGTACCTTTACGGGAAGTAAGAAGGTATGAAGAGCAGTTTAAAAAATTTGGGATTTCTTACGCTATTCTTTT AGAAAAAAAAGATGAGCATTATTTAGAGTTTAATGATTTAATAACAGAAAAAAGTCAAATAAGAGAAGTCCTTGAAAATG CTAATGAAGTGAAAAATACCATAGCAAAACATAAGGAAATGCTTTTAAACTGGTGGCAGGAAGTAGAACAGGAGATTTTA GAGTTTTACGGAAGAAATAACCTCTGGAGTTTTAGAAACGCTGCCCTGAATAAATTAAAGGAAAAGCTTTTGCCTCTTGG AACTCTTGATGAATTTAAAATTGCCGGCGTTTTCGTGAACTGGTGGGAAGAACTTCTTTATGATTTTAAGAGTATAGCTG CTACCGGCTGGAATAAAAACCTGGTGAATGATGAAAGGATTAAGGAAAAATATTTCGGGAAGGAAATCGAAGAAATAGAA GAACTGGAAAGTAAAATTGCGGAAGTAGAAGGCGAACTAAATGAACTTTTAGATGAAGTTGAAGAATGGGATGAAGAAGA GCAGGGAGAGAAAACGGCGAGCAAAGTAAAAAATCATCTAAAAGAGCTGGTAAAAGAATTAAAAGAAAATAAGAGCGAAT CGGCAATTAAAGAAGCTAAAAGATGGGAGGAGTTATTGGCTAAAATAGCTGAAAAAGAAAAAGAAATTAAAAATGCCCGA AGCAAAAAAACGCAAAAAGAAAAAAATCTTGAAAATGAAGTTTCCAGAAGAAAAGAAAACTTAACCGAGGAAGAAGTTAA AGAACTACTTTTGGGAAAATTCTATGAACTTATCGATAAACAGCTTGAAAAGTATCTAAATGCGGAAAAGAAAGAAATCG TCAAAGTCTTTGAAAATCTTTGGGACAAGTATAATGTATCGCTTTCTGAACTCACAAAAGCAAGAGATGAAGAAGTAAAT AAGCTAAATGAGTTTTTGCAAAAGCTGGGGTGTTACTATGAATGA
Upstream 100 bases:
>100_bases AACCAGCTAAAATGAATTGGGCTTAAAAATTAACGCACAGCAGGTAAAGATATATTTTTGGCGAATAACAGTATTGATTC TAAAATTAAGGGTGAGGTTA
Downstream 100 bases:
>100_bases GGATAAAAAAATTCCAGAAGGATGGCAATGGGTAAAATTGGGGGATATATTAAAATATGAGCAGCCTTATAAATATATTG TAAAAAGTACTGAATATAAG
Product: type I restriction-modification system subunit M
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 814; Mature: 813
Protein sequence:
>814_residues MAVATEKITLAQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFAAKKLELENMYKNLGFSDEQIKELTEDPNS YDIFYVPPKARWEYILNLKEDVGNQLNKALSALEEANPELDGVLKHIDFNATKGKIKLKDQQLIDLIHHFNKYTLTPESF EFPDLLGAAYEYLLKEFADSAGKKGGEFYTPAGVKKLMVRLVKPGENMTVYDPTVGSGGFLIEAFHYVEEKGQDRYNLGL YGQELNGLTWSICKMNMILHGISDAHIENEDVLTTPMFLENGYIKRFDRVLANPPFSENYTRANMQYPERFKYGFTPETG KKADLMFLQHMIASLKDDGIMATVMPHGVLFRGGQEKVIREGIVKEGIIEAIIGLPPKLFYNTGIPACIIVINKNKPEHL KNKILFINADREYGEGRNQNFLRPEDIEKIVNVFDEKKEIPGYSRLVDIKEIEENDFNLNIRRYVDNSPEPEIEDVRAHL TGGVPLREVRRYEEQFKKFGISYAILLEKKDEHYLEFNDLITEKSQIREVLENANEVKNTIAKHKEMLLNWWQEVEQEIL EFYGRNNLWSFRNAALNKLKEKLLPLGTLDEFKIAGVFVNWWEELLYDFKSIAATGWNKNLVNDERIKEKYFGKEIEEIE ELESKIAEVEGELNELLDEVEEWDEEEQGEKTASKVKNHLKELVKELKENKSESAIKEAKRWEELLAKIAEKEKEIKNAR SKKTQKEKNLENEVSRRKENLTEEEVKELLLGKFYELIDKQLEKYLNAEKKEIVKVFENLWDKYNVSLSELTKARDEEVN KLNEFLQKLGCYYE
Sequences:
>Translated_814_residues MAVATEKITLAQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFAAKKLELENMYKNLGFSDEQIKELTEDPNS YDIFYVPPKARWEYILNLKEDVGNQLNKALSALEEANPELDGVLKHIDFNATKGKIKLKDQQLIDLIHHFNKYTLTPESF EFPDLLGAAYEYLLKEFADSAGKKGGEFYTPAGVKKLMVRLVKPGENMTVYDPTVGSGGFLIEAFHYVEEKGQDRYNLGL YGQELNGLTWSICKMNMILHGISDAHIENEDVLTTPMFLENGYIKRFDRVLANPPFSENYTRANMQYPERFKYGFTPETG KKADLMFLQHMIASLKDDGIMATVMPHGVLFRGGQEKVIREGIVKEGIIEAIIGLPPKLFYNTGIPACIIVINKNKPEHL KNKILFINADREYGEGRNQNFLRPEDIEKIVNVFDEKKEIPGYSRLVDIKEIEENDFNLNIRRYVDNSPEPEIEDVRAHL TGGVPLREVRRYEEQFKKFGISYAILLEKKDEHYLEFNDLITEKSQIREVLENANEVKNTIAKHKEMLLNWWQEVEQEIL EFYGRNNLWSFRNAALNKLKEKLLPLGTLDEFKIAGVFVNWWEELLYDFKSIAATGWNKNLVNDERIKEKYFGKEIEEIE ELESKIAEVEGELNELLDEVEEWDEEEQGEKTASKVKNHLKELVKELKENKSESAIKEAKRWEELLAKIAEKEKEIKNAR SKKTQKEKNLENEVSRRKENLTEEEVKELLLGKFYELIDKQLEKYLNAEKKEIVKVFENLWDKYNVSLSELTKARDEEVN KLNEFLQKLGCYYE >Mature_813_residues AVATEKITLAQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFAAKKLELENMYKNLGFSDEQIKELTEDPNSY DIFYVPPKARWEYILNLKEDVGNQLNKALSALEEANPELDGVLKHIDFNATKGKIKLKDQQLIDLIHHFNKYTLTPESFE FPDLLGAAYEYLLKEFADSAGKKGGEFYTPAGVKKLMVRLVKPGENMTVYDPTVGSGGFLIEAFHYVEEKGQDRYNLGLY GQELNGLTWSICKMNMILHGISDAHIENEDVLTTPMFLENGYIKRFDRVLANPPFSENYTRANMQYPERFKYGFTPETGK KADLMFLQHMIASLKDDGIMATVMPHGVLFRGGQEKVIREGIVKEGIIEAIIGLPPKLFYNTGIPACIIVINKNKPEHLK NKILFINADREYGEGRNQNFLRPEDIEKIVNVFDEKKEIPGYSRLVDIKEIEENDFNLNIRRYVDNSPEPEIEDVRAHLT GGVPLREVRRYEEQFKKFGISYAILLEKKDEHYLEFNDLITEKSQIREVLENANEVKNTIAKHKEMLLNWWQEVEQEILE FYGRNNLWSFRNAALNKLKEKLLPLGTLDEFKIAGVFVNWWEELLYDFKSIAATGWNKNLVNDERIKEKYFGKEIEEIEE LESKIAEVEGELNELLDEVEEWDEEEQGEKTASKVKNHLKELVKELKENKSESAIKEAKRWEELLAKIAEKEKEIKNARS KKTQKEKNLENEVSRRKENLTEEEVKELLLGKFYELIDKQLEKYLNAEKKEIVKVFENLWDKYNVSLSELTKARDEEVNK LNEFLQKLGCYYE
Specific function: The M And S Subunits Together Form A Methyltransferase (Mtase) That Methylates Two Adenine Residues In Complementary Strands Of A Bipartite DNA Recognition Sequence. In The Presence Of The R Subunit The Complex Can Also Act As An Endonuclease, Binding To
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=244, Percent_Identity=29.0983606557377, Blast_Score=100, Evalue=6e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR011991 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 94792; Mature: 94661
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVATEKITLAQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFAAKKLELENM CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YKNLGFSDEQIKELTEDPNSYDIFYVPPKARWEYILNLKEDVGNQLNKALSALEEANPEL HHHCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH DGVLKHIDFNATKGKIKLKDQQLIDLIHHFNKYTLTPESFEFPDLLGAAYEYLLKEFADS HHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AGKKGGEFYTPAGVKKLMVRLVKPGENMTVYDPTVGSGGFLIEAFHYVEEKGQDRYNLGL CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCEECCC YGQELNGLTWSICKMNMILHGISDAHIENEDVLTTPMFLENGYIKRFDRVLANPPFSENY CCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCCCC TRANMQYPERFKYGFTPETGKKADLMFLQHMIASLKDDGIMATVMPHGVLFRGGQEKVIR CCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCHHHHHH EGIVKEGIIEAIIGLPPKLFYNTGIPACIIVINKNKPEHLKNKILFINADREYGEGRNQN HHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECCCCHHHCCCEEEEECCHHHCCCCCCC FLRPEDIEKIVNVFDEKKEIPGYSRLVDIKEIEENDFNLNIRRYVDNSPEPEIEDVRAHL CCCHHHHHHHHHHHHHHHCCCCHHHHEEHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHH TGGVPLREVRRYEEQFKKFGISYAILLEKKDEHYLEFNDLITEKSQIREVLENANEVKNT CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH IAKHKEMLLNWWQEVEQEILEFYGRNNLWSFRNAALNKLKEKLLPLGTLDEFKIAGVFVN HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH WWEELLYDFKSIAATGWNKNLVNDERIKEKYFGKEIEEIEELESKIAEVEGELNELLDEV HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH EEWDEEEQGEKTASKVKNHLKELVKELKENKSESAIKEAKRWEELLAKIAEKEKEIKNAR HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKKTQKEKNLENEVSRRKENLTEEEVKELLLGKFYELIDKQLEKYLNAEKKEIVKVFENL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH WDKYNVSLSELTKARDEEVNKLNEFLQKLGCYYE HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure AVATEKITLAQLETHLFKAADILRGKMDASEYKEYIFGMLFLKYTSDVFAAKKLELENM CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YKNLGFSDEQIKELTEDPNSYDIFYVPPKARWEYILNLKEDVGNQLNKALSALEEANPEL HHHCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH DGVLKHIDFNATKGKIKLKDQQLIDLIHHFNKYTLTPESFEFPDLLGAAYEYLLKEFADS HHHHHHHCCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AGKKGGEFYTPAGVKKLMVRLVKPGENMTVYDPTVGSGGFLIEAFHYVEEKGQDRYNLGL CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHCCCCCEECCC YGQELNGLTWSICKMNMILHGISDAHIENEDVLTTPMFLENGYIKRFDRVLANPPFSENY CCCHHCCCHHHHHHHHHHHHCCCCCCCCCCCCEECCHHHHCCHHHHHHHHHCCCCCCCCC TRANMQYPERFKYGFTPETGKKADLMFLQHMIASLKDDGIMATVMPHGVLFRGGQEKVIR CCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCHHHHHH EGIVKEGIIEAIIGLPPKLFYNTGIPACIIVINKNKPEHLKNKILFINADREYGEGRNQN HHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEECCCCHHHCCCEEEEECCHHHCCCCCCC FLRPEDIEKIVNVFDEKKEIPGYSRLVDIKEIEENDFNLNIRRYVDNSPEPEIEDVRAHL CCCHHHHHHHHHHHHHHHCCCCHHHHEEHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHH TGGVPLREVRRYEEQFKKFGISYAILLEKKDEHYLEFNDLITEKSQIREVLENANEVKNT CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH IAKHKEMLLNWWQEVEQEILEFYGRNNLWSFRNAALNKLKEKLLPLGTLDEFKIAGVFVN HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH WWEELLYDFKSIAATGWNKNLVNDERIKEKYFGKEIEEIEELESKIAEVEGELNELLDEV HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH EEWDEEEQGEKTASKVKNHLKELVKELKENKSESAIKEAKRWEELLAKIAEKEKEIKNAR HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SKKTQKEKNLENEVSRRKENLTEEEVKELLLGKFYELIDKQLEKYLNAEKKEIVKVFENL HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH WDKYNVSLSELTKARDEEVNKLNEFLQKLGCYYE HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]