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The map label for this gene is swrAB [H]

Identifier: 78044822

GI number: 78044822

Start: 144857

End: 146077

Strand: Direct

Name: swrAB [H]

Synonym: CHY_0171

Alternate gene names: 78044822

Gene position: 144857-146077 (Clockwise)

Preceding gene: 78042870

Following gene: 78043745

Centisome position: 6.03

GC content: 43.33

Gene sequence:

>1221_bases
ATGATTTGGGTGAAATTAGCTGGTAATACCCTTTATACCGTGTTTTTAGCTTTAATGGAAAATCCGGTATTCTGGCTGTT
AGTTTTAATTATTGCTTTGCAGTATTCCCGCATCTCGGGAAAATTTATCCTGTCAATGGATGTGATTTACGATACTTTAA
AAGCTACTGCCCACGGCATAATTGGCGGAATGGCTGGAAGTTTGGTTTTGGTGTTTCTCGGGATTGCTTTAAATGAGGCA
GGCCTTAGCTATCTTTGGCCTCTGGCTATTTTGTTTATGCTTATAAATCCCCGCTTTTTGTGTTTTTCCTATGCCGGTGG
AGTTGTTTCCTTGGCCTACTTAATTTTTGGCTTTCCCAAAGTAAATGTAGCGCAAATTGCAGCTTTAGTGGGAGTACTGC
ATTTAGTGGAAAGCGTCTTAATTTTAATAGGAGGGCATTTGGGGGCAAAGCCGGAGTATTTTAAAATAAAAACAGGACAA
ATTGTCGGGGGCTTTGTTTTGCAGCGGTTTTGGCCAATACCCCTGGCTGCTTTAGTGGTGGTGAACCAAGTCCCGGGGGT
GTCCGGCGGAATTCAGATGCCGGACTGGTGGCCGCTTATAAAAAGCAGTGAAGTTGCACCGAATCTTATGTATTCCTTGA
TTCCTGTGGTGGCGGGATTGGGTTACGGTGATATGGTGCTTACCCGCTACCCCGAAGAAAAAAGTAGACTATCTTCCCTG
TATCTTGGGATATATAGTGTAAGTTTAATTATTCTGGCGGTGCTGGCTATGAAACTTAGCTTTTTAACCTGGCTTGCTGC
AGTTTTTATGCCTTTAGGGCATGAAGCGGTAATTTACCTGGGAAGAAAACTTGAAGAAGGTAAACCTATTTTTGTAAATC
CCGAAAATGGTATCGGGGTAATGGTTTTAGGGGTCAGGGCCGGGTCGATAGCCGATGCAGCGGGACTCAGAACGGGGGAT
GTGATTTTAACGGTAAATGGAATTTATATTCACTCGCCGGAAGAACTTTTCCGGGAACTTACCTATGCCTACGGAATGGT
ACCTTTGGAAGTATCCCGCAGGGGCAGCCACCGCATTGAAACCTTATATTTAAAAAAGTCTTTTTTCCCGGTGGATGTGG
GAATCATGACTGCTCCTTCGCCTTATGATCCTTATATCGATTTAACTCAAAAAAGTACAGGGGTTTTTACCAAAATATGG
AACAGATTCAAGGGCAGTTAA

Upstream 100 bases:

>100_bases
GATGTAGTAGTAAAACAGCCGGCGGGAAGCAAGGAAGACCGGCAGCTCTTAAAAGCCAAAGAAATATTGGCGGAAAAGAT
TAAATAAGCGAGGGGCTTTC

Downstream 100 bases:

>100_bases
AAAGTTATAAATTTTGTAGATAATAACCCTTCTCTTTGATATAATAAGTTTAAACAAAAGTTGGGAGCGTGGGATTTTCA
TGACGGAATTTAATACCCCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MIWVKLAGNTLYTVFLALMENPVFWLLVLIIALQYSRISGKFILSMDVIYDTLKATAHGIIGGMAGSLVLVFLGIALNEA
GLSYLWPLAILFMLINPRFLCFSYAGGVVSLAYLIFGFPKVNVAQIAALVGVLHLVESVLILIGGHLGAKPEYFKIKTGQ
IVGGFVLQRFWPIPLAALVVVNQVPGVSGGIQMPDWWPLIKSSEVAPNLMYSLIPVVAGLGYGDMVLTRYPEEKSRLSSL
YLGIYSVSLIILAVLAMKLSFLTWLAAVFMPLGHEAVIYLGRKLEEGKPIFVNPENGIGVMVLGVRAGSIADAAGLRTGD
VILTVNGIYIHSPEELFRELTYAYGMVPLEVSRRGSHRIETLYLKKSFFPVDVGIMTAPSPYDPYIDLTQKSTGVFTKIW
NRFKGS

Sequences:

>Translated_406_residues
MIWVKLAGNTLYTVFLALMENPVFWLLVLIIALQYSRISGKFILSMDVIYDTLKATAHGIIGGMAGSLVLVFLGIALNEA
GLSYLWPLAILFMLINPRFLCFSYAGGVVSLAYLIFGFPKVNVAQIAALVGVLHLVESVLILIGGHLGAKPEYFKIKTGQ
IVGGFVLQRFWPIPLAALVVVNQVPGVSGGIQMPDWWPLIKSSEVAPNLMYSLIPVVAGLGYGDMVLTRYPEEKSRLSSL
YLGIYSVSLIILAVLAMKLSFLTWLAAVFMPLGHEAVIYLGRKLEEGKPIFVNPENGIGVMVLGVRAGSIADAAGLRTGD
VILTVNGIYIHSPEELFRELTYAYGMVPLEVSRRGSHRIETLYLKKSFFPVDVGIMTAPSPYDPYIDLTQKSTGVFTKIW
NRFKGS
>Mature_406_residues
MIWVKLAGNTLYTVFLALMENPVFWLLVLIIALQYSRISGKFILSMDVIYDTLKATAHGIIGGMAGSLVLVFLGIALNEA
GLSYLWPLAILFMLINPRFLCFSYAGGVVSLAYLIFGFPKVNVAQIAALVGVLHLVESVLILIGGHLGAKPEYFKIKTGQ
IVGGFVLQRFWPIPLAALVVVNQVPGVSGGIQMPDWWPLIKSSEVAPNLMYSLIPVVAGLGYGDMVLTRYPEEKSRLSSL
YLGIYSVSLIILAVLAMKLSFLTWLAAVFMPLGHEAVIYLGRKLEEGKPIFVNPENGIGVMVLGVRAGSIADAAGLRTGD
VILTVNGIYIHSPEELFRELTYAYGMVPLEVSRRGSHRIETLYLKKSFFPVDVGIMTAPSPYDPYIDLTQKSTGVFTKIW
NRFKGS

Specific function: Required for surface-adhering cells to differentiate into hyperflagellated and elongated swarm cells [H]

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44454; Mature: 44454

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIWVKLAGNTLYTVFLALMENPVFWLLVLIIALQYSRISGKFILSMDVIYDTLKATAHGI
CEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHH
IGGMAGSLVLVFLGIALNEAGLSYLWPLAILFMLINPRFLCFSYAGGVVSLAYLIFGFPK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCC
VNVAQIAALVGVLHLVESVLILIGGHLGAKPEYFKIKTGQIVGGFVLQRFWPIPLAALVV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHH
VNQVPGVSGGIQMPDWWPLIKSSEVAPNLMYSLIPVVAGLGYGDMVLTRYPEEKSRLSSL
HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHEEECCCHHHHHHHH
YLGIYSVSLIILAVLAMKLSFLTWLAAVFMPLGHEAVIYLGRKLEEGKPIFVNPENGIGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCCEE
MVLGVRAGSIADAAGLRTGDVILTVNGIYIHSPEELFRELTYAYGMVPLEVSRRGSHRIE
EEEEEECCCCHHHCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCEEEECCCCCCCEE
TLYLKKSFFPVDVGIMTAPSPYDPYIDLTQKSTGVFTKIWNRFKGS
EEEEECCCCEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MIWVKLAGNTLYTVFLALMENPVFWLLVLIIALQYSRISGKFILSMDVIYDTLKATAHGI
CEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHH
IGGMAGSLVLVFLGIALNEAGLSYLWPLAILFMLINPRFLCFSYAGGVVSLAYLIFGFPK
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCC
VNVAQIAALVGVLHLVESVLILIGGHLGAKPEYFKIKTGQIVGGFVLQRFWPIPLAALVV
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHH
VNQVPGVSGGIQMPDWWPLIKSSEVAPNLMYSLIPVVAGLGYGDMVLTRYPEEKSRLSSL
HHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHEEECCCHHHHHHHH
YLGIYSVSLIILAVLAMKLSFLTWLAAVFMPLGHEAVIYLGRKLEEGKPIFVNPENGIGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEECCCCCEE
MVLGVRAGSIADAAGLRTGDVILTVNGIYIHSPEELFRELTYAYGMVPLEVSRRGSHRIE
EEEEEECCCCHHHCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHCCCEEEECCCCCCCEE
TLYLKKSFFPVDVGIMTAPSPYDPYIDLTQKSTGVFTKIWNRFKGS
EEEEECCCCEEEEEEEECCCCCCCCEEECCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]