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The map label for this gene is nodJ [H]

Identifier: 78044713

GI number: 78044713

Start: 795724

End: 796464

Strand: Direct

Name: nodJ [H]

Synonym: CHY_0901

Alternate gene names: 78044713

Gene position: 795724-796464 (Clockwise)

Preceding gene: 78044743

Following gene: 78044480

Centisome position: 33.13

GC content: 43.45

Gene sequence:

>741_bases
ATGGCGGCTCTCTGGGCGATTTTTTACCGGGAGTTAATTCGCTACTGGCGAGAAAAAATCAGGATAATAACTTCGTTAGT
TCAGCCGGCCATCTGGCTTTTTGTCATGGGCGGTGGAATGGGAGCAGCTTTTACCGGACCCGGTGGAGTTAACTACCGTA
CTTTTATTTTTCCAGGAATTGTGGGTATGACCGTATTGTTTTCGGCGGTATTTTCGTCAATTTCCATTGTTTGGGACCGG
GAGTTCGGGTTTTTAAAAGAAGTGTTGGTCTCCCCGGCTTCCCGCGAAAGTATTGTTTTGGGGAAAGCCCTGGGGGGAGC
TACCACTGCGGTTATTCAGGGGATGATTATTTTAATTTTTGCTCCGGCAGTTGGAATCAATCTTTCTTTTTCCATGGTGG
TAAAAGCTTTTGTTACCATGTATTTTATTGCCCTTACCATGGCGGCTTTTGGAATTGTGATTGCTGCCCGGATGCAGTCG
ATGCAGGGGTTTCAATTTGTCACGAACTTTATTGTAATGCCATTATTTTTCTTAAGTGGAGCTATCTACCCTTTAAAAGG
AATTCCCGGTTGGTTGGCTACTTTGGCTGCGATTGACCCTCTGGCTTACGGGATTGATCTTTTAAAGCACGTATTTCTGC
CCTACCATGAATATAGCTTAGCTACCGATATTACGGTGATGGCTGGATTTTGTTTATTGTTTTTATTTTTGGGGGTACTT
CTTTTTAAAAAAGATGGATAA

Upstream 100 bases:

>100_bases
CCCTTGATGATGTGTTTTTAAAACTTACCGGACGGGAAATACGGGATGAAGTAGGGGAAAACCATAGAACACCTAAATTT
AGGCGCAGGAGGTGGCGGTG

Downstream 100 bases:

>100_bases
AATTTAAAATCCGGCAGGAAAAAATTATATTTTGTTGAATATACTAAATAGTTTGAAACCGGAGGGATTTAGTTTGGACG
AGCATACCGGGGTCATGATA

Product: daunorubicin resistance ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MAALWAIFYRELIRYWREKIRIITSLVQPAIWLFVMGGGMGAAFTGPGGVNYRTFIFPGIVGMTVLFSAVFSSISIVWDR
EFGFLKEVLVSPASRESIVLGKALGGATTAVIQGMIILIFAPAVGINLSFSMVVKAFVTMYFIALTMAAFGIVIAARMQS
MQGFQFVTNFIVMPLFFLSGAIYPLKGIPGWLATLAAIDPLAYGIDLLKHVFLPYHEYSLATDITVMAGFCLLFLFLGVL
LFKKDG

Sequences:

>Translated_246_residues
MAALWAIFYRELIRYWREKIRIITSLVQPAIWLFVMGGGMGAAFTGPGGVNYRTFIFPGIVGMTVLFSAVFSSISIVWDR
EFGFLKEVLVSPASRESIVLGKALGGATTAVIQGMIILIFAPAVGINLSFSMVVKAFVTMYFIALTMAAFGIVIAARMQS
MQGFQFVTNFIVMPLFFLSGAIYPLKGIPGWLATLAAIDPLAYGIDLLKHVFLPYHEYSLATDITVMAGFCLLFLFLGVL
LFKKDG
>Mature_245_residues
AALWAIFYRELIRYWREKIRIITSLVQPAIWLFVMGGGMGAAFTGPGGVNYRTFIFPGIVGMTVLFSAVFSSISIVWDRE
FGFLKEVLVSPASRESIVLGKALGGATTAVIQGMIILIFAPAVGINLSFSMVVKAFVTMYFIALTMAAFGIVIAARMQSM
QGFQFVTNFIVMPLFFLSGAIYPLKGIPGWLATLAAIDPLAYGIDLLKHVFLPYHEYSLATDITVMAGFCLLFLFLGVLL
FKKDG

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=171, Percent_Identity=30.9941520467836, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1786320, Length=241, Percent_Identity=22.8215767634855, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 26960; Mature: 26829

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCC
>Mature Secondary Structure 
AALWAIFYRELIRYWREKIRIITSLVQPAIWLFVMGGGMGAAFTGPGGVNYRTFIFPGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
VGMTVLFSAVFSSISIVWDREFGFLKEVLVSPASRESIVLGKALGGATTAVIQGMIILIF
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEEEHHHHCHHHHHHHHHHHHHHH
APAVGINLSFSMVVKAFVTMYFIALTMAAFGIVIAARMQSMQGFQFVTNFIVMPLFFLSG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AIYPLKGIPGWLATLAAIDPLAYGIDLLKHVFLPYHEYSLATDITVMAGFCLLFLFLGVL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LFKKDG
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3019841; 3419422 [H]