Click here to switch to the map view.

The map label for this gene is stc [H]

Identifier: 78044504

GI number: 78044504

Start: 695585

End: 697426

Strand: Direct

Name: stc [H]

Synonym: CHY_0788

Alternate gene names: 78044504

Gene position: 695585-697426 (Clockwise)

Preceding gene: 161594523

Following gene: 78043924

Centisome position: 28.96

GC content: 43.16

Gene sequence:

>1842_bases
ATGAATGAGCAATGGCGGCGTTTTATTTCAGGGGAAGACCCTGTAAGCAGCGTAGATCCGCTAATCTTGCGTTCCTGGAA
GAGGTGTAGAGAAAAAGTAGTTGATTACCAAAGAGTTATTAATAACGATATACTTCCTGCACCGCTTTTACGAGAACGCT
GGCAAAAGCAGGAAGAATTACTGAAAGCAGCAGAACAGGTATTGCCCCATATCTACCGCTTACTGCAGGGCCAAAACTAT
ATGGTTATACTTTGCGATTCTGAGGGATATATTTTAAAAGCAATAGGCGATCCCCCGTTTCTGAATAAAGCTCAGAAAGT
GTACTTATCGCCTGGGGCTAACTGGCGGGAAGATATTAAAGGAACCAACGCCATTGGTACTTCTATTTCTGAAGGTACGG
CTGTTAAAGTTTTAGGCTGGGAACATTATGTCCAGGAAAACCATTTTTTAAATTGCTGGGCTGCACCGGTGTACAATTCT
GAAGGAAAGATGGTAGGGGTGTTGGACATATCCGGGGAAAACGGAAGGAGTGACAACCGTCTTTTAGAAATTGCCCTCAT
GGGGGCCAAAATAATTGAGCAAAATCTCTTATTGCAAGAATTGCAGAAAAAGGTTGTTATTAGCCAGCAAGGGCTTCAAC
TGGCAGGTAAGATGCTGCAGGAAGGGGTTATTGTTATTGATAACCAAGGGATAATTACCGAGATAAACCAAAAGGGCGCC
CAGATTTTGGGCAAACGGCGAGAGGAAGTTATAGGTAATTTGATAAGTGATGTTTTGGGTAGTGCTAAAAGCTTCTCGCT
TAGCCCAAAGGAAGAAAAGTTCCAAATTAATGCAGGGCTTGGGGAGAAAATTGGTGACAAGAGGTTTGATACCGTTTATG
CACTGAACCGGGCTGGGCAAAATGTGATTGAACAACATAGATGGGTCGGCAACAGTACCAAATCGAAACAGGTGTTAGAA
ATAGTAGCAAAAGCAGCTGCAGTTAATTTGTCGGTGCTGCTACAGGGAGAGAGCGGTACGGGAAAAGAGGTAATTGCCCG
CTATATTCATCAGCTCAGCGACCGGAAGAATGGTCCGTTTATTGCCATAAATTGTGCTGCTTTGCCGCCTAATTTAATTG
AAAGCGAGCTTTTCGGTTACGTTGAAGGAGCTTTTACAGGTGCTAAAAAAGGTGGACAGCCCGGGAAGTTTGAACTTGCT
AATGGTGGTACGATCTTTTTAGACGAAATCAGCGATATGCCATTGAATGTTCAAGCAGCGTTATTACGTGTACTTCAGGA
ACGGGAAGTTTGTCGTATCGGAGATAATAAAGTTAGAAAAATTGATGTTAGGGTCATTGCCGCAACTCAAAAAGATTTGC
AGCAGTTAGTCAATGATGGGTTATTTCGTTTAGATTTATATTACCGCTTAAAAGTCATTACCATAAACTTACCGCCACTG
CGTGAACGGAAGGAAGATTTGTATGAGCTGGTACCCTATTTTGTTAACAAAGCTTGTCAAAGTATGGGTAAACCGCTTTT
GAGTGTGGACCGAGAAATTTACTCTTATTTCCTTGCATACCACTGGCCGGGAAATGTGAGAGAGCTCGAAAACTGTATTT
ACAGTATGGTGGCATTAGCTACCGGTTCGCAGCTCACAGTTGCCGATTTGCCGGTAGAATTGCGCCAGAATTTGGAATCT
GTTCAAGCTGATAGTAGTTCACTTTTGGAGCAAAAGACCAAGCTTGCGATACTGGAAGCGTTAAAACAAACAAATGGGAA
AATTGCTCCGGCTGCTCGATTGTTGGGAATGGGGCGGACCACACTGTACCGCAAGCTGAAAAAATATAACCTGCTCAAAT
AG

Upstream 100 bases:

>100_bases
AGGTTTACACCGAGCAAATAAAAGCAGGGGCTTTTTAAGCGAAGTCCCTGCTTTTTGTAAAGGAGAGTAAAAAATATTAC
AAGCGGGGGAGTATGGAAGA

Downstream 100 bases:

>100_bases
AAACAGTTTGTTGGGACAAAATGTTTCAGAAAGGAACATTTTATTTTGTATTTTTCGGAAAGCTGTAAATTTTTATACTT
TATAAATATCTGAAAATTGG

Product: sigma-54 dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 613; Mature: 613

Protein sequence:

>613_residues
MNEQWRRFISGEDPVSSVDPLILRSWKRCREKVVDYQRVINNDILPAPLLRERWQKQEELLKAAEQVLPHIYRLLQGQNY
MVILCDSEGYILKAIGDPPFLNKAQKVYLSPGANWREDIKGTNAIGTSISEGTAVKVLGWEHYVQENHFLNCWAAPVYNS
EGKMVGVLDISGENGRSDNRLLEIALMGAKIIEQNLLLQELQKKVVISQQGLQLAGKMLQEGVIVIDNQGIITEINQKGA
QILGKRREEVIGNLISDVLGSAKSFSLSPKEEKFQINAGLGEKIGDKRFDTVYALNRAGQNVIEQHRWVGNSTKSKQVLE
IVAKAAAVNLSVLLQGESGTGKEVIARYIHQLSDRKNGPFIAINCAALPPNLIESELFGYVEGAFTGAKKGGQPGKFELA
NGGTIFLDEISDMPLNVQAALLRVLQEREVCRIGDNKVRKIDVRVIAATQKDLQQLVNDGLFRLDLYYRLKVITINLPPL
RERKEDLYELVPYFVNKACQSMGKPLLSVDREIYSYFLAYHWPGNVRELENCIYSMVALATGSQLTVADLPVELRQNLES
VQADSSSLLEQKTKLAILEALKQTNGKIAPAARLLGMGRTTLYRKLKKYNLLK

Sequences:

>Translated_613_residues
MNEQWRRFISGEDPVSSVDPLILRSWKRCREKVVDYQRVINNDILPAPLLRERWQKQEELLKAAEQVLPHIYRLLQGQNY
MVILCDSEGYILKAIGDPPFLNKAQKVYLSPGANWREDIKGTNAIGTSISEGTAVKVLGWEHYVQENHFLNCWAAPVYNS
EGKMVGVLDISGENGRSDNRLLEIALMGAKIIEQNLLLQELQKKVVISQQGLQLAGKMLQEGVIVIDNQGIITEINQKGA
QILGKRREEVIGNLISDVLGSAKSFSLSPKEEKFQINAGLGEKIGDKRFDTVYALNRAGQNVIEQHRWVGNSTKSKQVLE
IVAKAAAVNLSVLLQGESGTGKEVIARYIHQLSDRKNGPFIAINCAALPPNLIESELFGYVEGAFTGAKKGGQPGKFELA
NGGTIFLDEISDMPLNVQAALLRVLQEREVCRIGDNKVRKIDVRVIAATQKDLQQLVNDGLFRLDLYYRLKVITINLPPL
RERKEDLYELVPYFVNKACQSMGKPLLSVDREIYSYFLAYHWPGNVRELENCIYSMVALATGSQLTVADLPVELRQNLES
VQADSSSLLEQKTKLAILEALKQTNGKIAPAARLLGMGRTTLYRKLKKYNLLK
>Mature_613_residues
MNEQWRRFISGEDPVSSVDPLILRSWKRCREKVVDYQRVINNDILPAPLLRERWQKQEELLKAAEQVLPHIYRLLQGQNY
MVILCDSEGYILKAIGDPPFLNKAQKVYLSPGANWREDIKGTNAIGTSISEGTAVKVLGWEHYVQENHFLNCWAAPVYNS
EGKMVGVLDISGENGRSDNRLLEIALMGAKIIEQNLLLQELQKKVVISQQGLQLAGKMLQEGVIVIDNQGIITEINQKGA
QILGKRREEVIGNLISDVLGSAKSFSLSPKEEKFQINAGLGEKIGDKRFDTVYALNRAGQNVIEQHRWVGNSTKSKQVLE
IVAKAAAVNLSVLLQGESGTGKEVIARYIHQLSDRKNGPFIAINCAALPPNLIESELFGYVEGAFTGAKKGGQPGKFELA
NGGTIFLDEISDMPLNVQAALLRVLQEREVCRIGDNKVRKIDVRVIAATQKDLQQLVNDGLFRLDLYYRLKVITINLPPL
RERKEDLYELVPYFVNKACQSMGKPLLSVDREIYSYFLAYHWPGNVRELENCIYSMVALATGSQLTVADLPVELRQNLES
VQADSSSLLEQKTKLAILEALKQTNGKIAPAARLLGMGRTTLYRKLKKYNLLK

Specific function: Unknown

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=423, Percent_Identity=38.5342789598109, Blast_Score=267, Evalue=1e-72,
Organism=Escherichia coli, GI87082117, Length=399, Percent_Identity=39.8496240601504, Blast_Score=257, Evalue=2e-69,
Organism=Escherichia coli, GI1788550, Length=310, Percent_Identity=45.1612903225806, Blast_Score=257, Evalue=2e-69,
Organism=Escherichia coli, GI1790299, Length=332, Percent_Identity=42.1686746987952, Blast_Score=254, Evalue=8e-69,
Organism=Escherichia coli, GI1789087, Length=309, Percent_Identity=45.6310679611651, Blast_Score=242, Evalue=5e-65,
Organism=Escherichia coli, GI1790437, Length=305, Percent_Identity=43.2786885245902, Blast_Score=239, Evalue=4e-64,
Organism=Escherichia coli, GI1786524, Length=405, Percent_Identity=36.0493827160494, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI1788905, Length=331, Percent_Identity=41.0876132930514, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI87082152, Length=337, Percent_Identity=40.3560830860534, Blast_Score=215, Evalue=6e-57,
Organism=Escherichia coli, GI87081872, Length=318, Percent_Identity=38.6792452830189, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI1787583, Length=321, Percent_Identity=37.0716510903427, Blast_Score=203, Evalue=3e-53,
Organism=Escherichia coli, GI87081858, Length=640, Percent_Identity=26.71875, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1789828, Length=241, Percent_Identity=35.6846473029046, Blast_Score=144, Evalue=1e-35,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 68621; Mature: 68621

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4 ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEQWRRFISGEDPVSSVDPLILRSWKRCREKVVDYQRVINNDILPAPLLRERWQKQEEL
CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LKAAEQVLPHIYRLLQGQNYMVILCDSEGYILKAIGDPPFLNKAQKVYLSPGANWREDIK
HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHCC
GTNAIGTSISEGTAVKVLGWEHYVQENHFLNCWAAPVYNSEGKMVGVLDISGENGRSDNR
CCCCCCCCCCCCCEEEEECHHHHHCCCCEEEEEECCEECCCCCEEEEEEECCCCCCCCCC
LLEIALMGAKIIEQNLLLQELQKKVVISQQGLQLAGKMLQEGVIVIDNQGIITEINQKGA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEHHHHHHH
QILGKRREEVIGNLISDVLGSAKSFSLSPKEEKFQINAGLGEKIGDKRFDTVYALNRAGQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCH
NVIEQHRWVGNSTKSKQVLEIVAKAAAVNLSVLLQGESGTGKEVIARYIHQLSDRKNGPF
HHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCE
IAINCAALPPNLIESELFGYVEGAFTGAKKGGQPGKFELANGGTIFLDEISDMPLNVQAA
EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCHHHH
LLRVLQEREVCRIGDNKVRKIDVRVIAATQKDLQQLVNDGLFRLDLYYRLKVITINLPPL
HHHHHHHCCHHHCCCCCEEEEEEEEEEHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCC
RERKEDLYELVPYFVNKACQSMGKPLLSVDREIYSYFLAYHWPGNVRELENCIYSMVALA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
TGSQLTVADLPVELRQNLESVQADSSSLLEQKTKLAILEALKQTNGKIAPAARLLGMGRT
CCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHH
TLYRKLKKYNLLK
HHHHHHHHHCCCC
>Mature Secondary Structure
MNEQWRRFISGEDPVSSVDPLILRSWKRCREKVVDYQRVINNDILPAPLLRERWQKQEEL
CCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
LKAAEQVLPHIYRLLQGQNYMVILCDSEGYILKAIGDPPFLNKAQKVYLSPGANWREDIK
HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCCCEEEECCCCCHHHHCC
GTNAIGTSISEGTAVKVLGWEHYVQENHFLNCWAAPVYNSEGKMVGVLDISGENGRSDNR
CCCCCCCCCCCCCEEEEECHHHHHCCCCEEEEEECCEECCCCCEEEEEEECCCCCCCCCC
LLEIALMGAKIIEQNLLLQELQKKVVISQQGLQLAGKMLQEGVIVIDNQGIITEINQKGA
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEHHHHHHH
QILGKRREEVIGNLISDVLGSAKSFSLSPKEEKFQINAGLGEKIGDKRFDTVYALNRAGQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCH
NVIEQHRWVGNSTKSKQVLEIVAKAAAVNLSVLLQGESGTGKEVIARYIHQLSDRKNGPF
HHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCE
IAINCAALPPNLIESELFGYVEGAFTGAKKGGQPGKFELANGGTIFLDEISDMPLNVQAA
EEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEECCCCCCCCHHHH
LLRVLQEREVCRIGDNKVRKIDVRVIAATQKDLQQLVNDGLFRLDLYYRLKVITINLPPL
HHHHHHHCCHHHCCCCCEEEEEEEEEEHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCC
RERKEDLYELVPYFVNKACQSMGKPLLSVDREIYSYFLAYHWPGNVRELENCIYSMVALA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
TGSQLTVADLPVELRQNLESVQADSSSLLEQKTKLAILEALKQTNGKIAPAARLLGMGRT
CCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHH
TLYRKLKKYNLLK
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA