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The map label for this gene is ydcN [C]

Identifier: 78044374

GI number: 78044374

Start: 478753

End: 479526

Strand: Direct

Name: ydcN [C]

Synonym: CHY_0550

Alternate gene names: 78044374

Gene position: 478753-479526 (Clockwise)

Preceding gene: 78043140

Following gene: 78042690

Centisome position: 19.94

GC content: 41.09

Gene sequence:

>774_bases
ATGACGGTAAAGGGAAATAAAATTCGCGAGCTCAGGGAAGAGCGCGGACTTACCTTAAATGAACTTTCCAAAAAAGCGGG
TCTTTCAATTTCCTACTTGAGCGAAATTGAAAGGGGTTCCAAAAAGCCGTCATTAAAAACCATTGACAAAATTGCCAAAG
CTTTAAACGTTAATAAAGCGCAAATTTTGGAAACCGAGCAATTGGAAGTAAGCCTAACTTTAGGCGAGCGAATTCGCTTG
ATAAGGGAAGAAAAAAAGCTTACCATAAGCGAACTTGCGGCGCGGGTGGGCATATCGGTTTCCTATTTAAGTGAAATTGA
AAGGGATACGGTGAACCCTTCCGTTGCTACCTTACGCCGGATTGCGGAAGAATTAGGTGTATCGGTAGCCGATTTAATGG
GGAAGGAACATTCCCTTGGTTACAAGTTAAAAAAGTTAAGGGAAGATATGGGCCTTACCCAGGCGGAATTAGCCAGTCAG
GCGGGGGTTTCTCCGGGATTAATTGGCCAGATAGAACAGGGGAAAGTTCAACCTTCGCTAAAAACTATCGAAAAATTGGC
GGAAGTATTGGGAACAACTCCTTGTTACTTTATTTTGGAACAAACCTCTCCGGAACAAATGTTAAATTTAATGAGTCCGG
AATTAAGGGAGCTTTTGCTAAATCCCAACGTTCAATCGTTATTGAGCAGTATTTGTACCTTGAATGAAAAGGAACTCCAG
TTTATTTTAAACTTTATCCAGCTGTTTAAAAAATCAGGGGTAATGGAAGAATAA

Upstream 100 bases:

>100_bases
TACGTAAATAGCGAAATTTTCGCTAAAAATCGTTGACTATTTTAGTATAAGTAATATAAGATAATAGTATAATCAAAAAA
TGTAAAAAGAGGTGTAGGAA

Downstream 100 bases:

>100_bases
ATTTTACACATATATTATTGACAGCGAAAAATTTTTATACTATAATCGTAAAGTGTCGGAGGGAGGTTAAAAATGCCAAG
GTACGATTTTCGTTGTGAAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; AraC Family Transcriptional Regulator

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MTVKGNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDKIAKALNVNKAQILETEQLEVSLTLGERIRL
IREEKKLTISELAARVGISVSYLSEIERDTVNPSVATLRRIAEELGVSVADLMGKEHSLGYKLKKLREDMGLTQAELASQ
AGVSPGLIGQIEQGKVQPSLKTIEKLAEVLGTTPCYFILEQTSPEQMLNLMSPELRELLLNPNVQSLLSSICTLNEKELQ
FILNFIQLFKKSGVMEE

Sequences:

>Translated_257_residues
MTVKGNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDKIAKALNVNKAQILETEQLEVSLTLGERIRL
IREEKKLTISELAARVGISVSYLSEIERDTVNPSVATLRRIAEELGVSVADLMGKEHSLGYKLKKLREDMGLTQAELASQ
AGVSPGLIGQIEQGKVQPSLKTIEKLAEVLGTTPCYFILEQTSPEQMLNLMSPELRELLLNPNVQSLLSSICTLNEKELQ
FILNFIQLFKKSGVMEE
>Mature_256_residues
TVKGNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDKIAKALNVNKAQILETEQLEVSLTLGERIRLI
REEKKLTISELAARVGISVSYLSEIERDTVNPSVATLRRIAEELGVSVADLMGKEHSLGYKLKKLREDMGLTQAELASQA
GVSPGLIGQIEQGKVQPSLKTIEKLAEVLGTTPCYFILEQTSPEQMLNLMSPELRELLLNPNVQSLLSSICTLNEKELQF
ILNFIQLFKKSGVMEE

Specific function: Unknown

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28592; Mature: 28461

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVKGNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDKIAKALNVNKA
CCCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHH
QILETEQLEVSLTLGERIRLIREEKKLTISELAARVGISVSYLSEIERDTVNPSVATLRR
HHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH
IAEELGVSVADLMGKEHSLGYKLKKLREDMGLTQAELASQAGVSPGLIGQIEQGKVQPSL
HHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHH
KTIEKLAEVLGTTPCYFILEQTSPEQMLNLMSPELRELLLNPNVQSLLSSICTLNEKELQ
HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCHHHHHHHHCCCHHHHHHHHHCCCHHHHH
FILNFIQLFKKSGVMEE
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TVKGNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDKIAKALNVNKA
CCCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHH
QILETEQLEVSLTLGERIRLIREEKKLTISELAARVGISVSYLSEIERDTVNPSVATLRR
HHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHH
IAEELGVSVADLMGKEHSLGYKLKKLREDMGLTQAELASQAGVSPGLIGQIEQGKVQPSL
HHHHHCCHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHH
KTIEKLAEVLGTTPCYFILEQTSPEQMLNLMSPELRELLLNPNVQSLLSSICTLNEKELQ
HHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCHHHHHHHHCCCHHHHHHHHHCCCHHHHH
FILNFIQLFKKSGVMEE
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA