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The map label for this gene is comF [H]

Identifier: 78044328

GI number: 78044328

Start: 129098

End: 129787

Strand: Direct

Name: comF [H]

Synonym: CHY_0153

Alternate gene names: 78044328

Gene position: 129098-129787 (Clockwise)

Preceding gene: 78044989

Following gene: 78043760

Centisome position: 5.38

GC content: 42.03

Gene sequence:

>690_bases
ATGTTTTTAGATTTTTTTTACCCCAAGCCTAAGGTTTGTCCCCTCTGTCAAAAGCCAATGCCCCAAAGGGAGTTTTGTAA
AAGCTGCCGGGAATTTATGCAAAAAACCCGCTTTATGTGTCAAATCTGCGGTCGAATTTTACCGGTAGAAGTACCGCTTT
GTTCTGATTGCCGGAAAAATTTGTTTAGTTTTACCAAAGCCTCCGGTCTTCTTCCCTATACCGGTCCGGTAAAAAAAAGT
ATGGCTTTGTTTAAGTATAAAAATAAAAGGTACATCTGGGATGAGCTTTATGACCTTTTAGCAGAACACTGCCGTAAAAA
CCTGGGGGAGGAATTTGATTTAATTATTCCGGTTCCCCTTTATCAGAGAAAATTAAAGGAGAGGGGTTACAACCAGGCGG
AGATTTTAGCTAAAAACCTGGCCCGCCGGCTAAAATTACCCTTGGGCCGCGACATCCTTATCAAGATTAAAGACACCCCG
CCCCAGGCTAAACTTGGATATTTTGATCGGAAAAAAAACCTTAAAGGAAACTTTGCGGTAAAGGAAAGGTTTACCGGCAG
GGAAAAGATTCTTTTGGTTGATGATGTTTTTACTACCGGGGCTACCGCTCAGGAATGTACCCGGACTTTGCTTCTGGCAG
GAGCTGACAAAGTTTATGTTATTACCATGGCAACTGCTGTAAAAAAATAG

Upstream 100 bases:

>100_bases
GGTTACAAACGTTTTTTAGTGCCGGGGCTATTGCTTTGGGGATAGCCATTACTTCTTCGGTAATGCGGCTTTATAAAAAA
GTAACGCAAAGGAAACAGCG

Downstream 100 bases:

>100_bases
CATTGTAGCAAAGATTATGCCAAAAAAAATTTTGAAAATTCATTTGCCAATAACTTATCCACAACAAAACCCCCGATTTT
GGTAGTTATCAACAGAGTTA

Product: putative competence protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MFLDFFYPKPKVCPLCQKPMPQREFCKSCREFMQKTRFMCQICGRILPVEVPLCSDCRKNLFSFTKASGLLPYTGPVKKS
MALFKYKNKRYIWDELYDLLAEHCRKNLGEEFDLIIPVPLYQRKLKERGYNQAEILAKNLARRLKLPLGRDILIKIKDTP
PQAKLGYFDRKKNLKGNFAVKERFTGREKILLVDDVFTTGATAQECTRTLLLAGADKVYVITMATAVKK

Sequences:

>Translated_229_residues
MFLDFFYPKPKVCPLCQKPMPQREFCKSCREFMQKTRFMCQICGRILPVEVPLCSDCRKNLFSFTKASGLLPYTGPVKKS
MALFKYKNKRYIWDELYDLLAEHCRKNLGEEFDLIIPVPLYQRKLKERGYNQAEILAKNLARRLKLPLGRDILIKIKDTP
PQAKLGYFDRKKNLKGNFAVKERFTGREKILLVDDVFTTGATAQECTRTLLLAGADKVYVITMATAVKK
>Mature_229_residues
MFLDFFYPKPKVCPLCQKPMPQREFCKSCREFMQKTRFMCQICGRILPVEVPLCSDCRKNLFSFTKASGLLPYTGPVKKS
MALFKYKNKRYIWDELYDLLAEHCRKNLGEEFDLIIPVPLYQRKLKERGYNQAEILAKNLARRLKLPLGRDILIKIKDTP
PQAKLGYFDRKKNLKGNFAVKERFTGREKILLVDDVFTTGATAQECTRTLLLAGADKVYVITMATAVKK

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=220, Percent_Identity=30, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26551; Mature: 26551

Theoretical pI: Translated: 10.17; Mature: 10.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLDFFYPKPKVCPLCQKPMPQREFCKSCREFMQKTRFMCQICGRILPVEVPLCSDCRKN
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LFSFTKASGLLPYTGPVKKSMALFKYKNKRYIWDELYDLLAEHCRKNLGEEFDLIIPVPL
HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCHH
YQRKLKERGYNQAEILAKNLARRLKLPLGRDILIKIKDTPPQAKLGYFDRKKNLKGNFAV
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCEEH
KERFTGREKILLVDDVFTTGATAQECTRTLLLAGADKVYVITMATAVKK
HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHCC
>Mature Secondary Structure
MFLDFFYPKPKVCPLCQKPMPQREFCKSCREFMQKTRFMCQICGRILPVEVPLCSDCRKN
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LFSFTKASGLLPYTGPVKKSMALFKYKNKRYIWDELYDLLAEHCRKNLGEEFDLIIPVPL
HHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCHH
YQRKLKERGYNQAEILAKNLARRLKLPLGRDILIKIKDTPPQAKLGYFDRKKNLKGNFAV
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHCCCCCCCEEH
KERFTGREKILLVDDVFTTGATAQECTRTLLLAGADKVYVITMATAVKK
HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]