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The map label for this gene is rpmB

Identifier: 78044163

GI number: 78044163

Start: 1311653

End: 1311841

Strand: Direct

Name: rpmB

Synonym: CHY_1469

Alternate gene names: 78044163

Gene position: 1311653-1311841 (Clockwise)

Preceding gene: 78044136

Following gene: 78043586

Centisome position: 54.62

GC content: 40.21

Gene sequence:

>189_bases
ATGGCTAAAGTTTGCGAAATCTGCGGGAAAGGCGTAGTTTATGGTCATCAAATAAGCCATTCGAATATTCATACTAAAAG
AAAATGGCTCCCCAATTTACAAAGAGTACGGGCTGTTGTTAATGGAACCCGAAGAAGAATAACCGTTTGCACTACCTGCC
TGAAATCAGGTAAAGTACAAAGAGCATAG

Upstream 100 bases:

>100_bases
CTTTGGTATCAATTTTCCATTGCCCCTTGCAAAACCTTTAGCTTTTTGATATCTTTTACATGTATATATTTTAGCACAGT
AAGAGCAGGAGGTGTACTTT

Downstream 100 bases:

>100_bases
AATAAAGTCGTGCAAAAGCACGGCTTTTTTCTTTAAAAAAAAACGCCAAAATTGGCGTTAGGTATTTTTTTCTTTATATT
CTTTTATTTCTTTTCCTGAA

Product: 50S ribosomal protein L28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 62; Mature: 61

Protein sequence:

>62_residues
MAKVCEICGKGVVYGHQISHSNIHTKRKWLPNLQRVRAVVNGTRRRITVCTTCLKSGKVQRA

Sequences:

>Translated_62_residues
MAKVCEICGKGVVYGHQISHSNIHTKRKWLPNLQRVRAVVNGTRRRITVCTTCLKSGKVQRA
>Mature_61_residues
AKVCEICGKGVVYGHQISHSNIHTKRKWLPNLQRVRAVVNGTRRRITVCTTCLKSGKVQRA

Specific function: Unknown

COG id: COG0227

COG function: function code J; Ribosomal protein L28

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L28P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL28_CARHZ (Q3AC33)

Other databases:

- EMBL:   CP000141
- RefSeq:   YP_360301.1
- ProteinModelPortal:   Q3AC33
- SMR:   Q3AC33
- STRING:   Q3AC33
- GeneID:   3727279
- GenomeReviews:   CP000141_GR
- KEGG:   chy:CHY_1469
- NMPDR:   fig|246194.3.peg.18
- TIGR:   CHY_1469
- eggNOG:   COG0227
- HOGENOM:   HBG597003
- OMA:   NACTSCI
- ProtClustDB:   PRK00359
- BioCyc:   CHYD246194:CHY_1469-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00373
- InterPro:   IPR001383
- TIGRFAMs:   TIGR00009

Pfam domain/function: PF00830 Ribosomal_L28

EC number: NA

Molecular weight: Translated: 6988; Mature: 6857

Theoretical pI: Translated: 11.62; Mature: 11.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
6.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKVCEICGKGVVYGHQISHSNIHTKRKWLPNLQRVRAVVNGTRRRITVCTTCLKSGKVQ
CCCHHHHHCCCCEECCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCC
RA
CC
>Mature Secondary Structure 
AKVCEICGKGVVYGHQISHSNIHTKRKWLPNLQRVRAVVNGTRRRITVCTTCLKSGKVQ
CCHHHHHCCCCEECCCCCCCCCCHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCC
RA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA