Click here to switch to the map view.

The map label for this gene is yrkF [H]

Identifier: 78044130

GI number: 78044130

Start: 487434

End: 487814

Strand: Direct

Name: yrkF [H]

Synonym: CHY_0566

Alternate gene names: 78044130

Gene position: 487434-487814 (Clockwise)

Preceding gene: 78045059

Following gene: 78043513

Centisome position: 20.3

GC content: 40.94

Gene sequence:

>381_bases
TTGCCGCGGAGCAAATATGTATTTTGGGTAATAATAGTTTTGCTATTATTTGCTTTGACGGGGTGCTTAAAAGCCGGTTA
TAAGGATTTAGAGCCCGATGAAGCCAAGAAGCTTATTGATGAAAATCCAATGCTTTTAATTATGGATGTCAGAGAACCTT
ATGAGTATGCCGAAGCGCGTATTCCCGGTTCCCATAACATTCCTATGGGAGAGGTGGAACAGCAGTTACCCAACATTGAT
AAAGAACAGGAAATTTTAGTGGTATGTGAAACCGGAAGTCGGTCGGCAAGTATTGCCCAGATGCTGGTGAGTAAAGGTTA
CAAGCATGTTTACAATTTAAAAGGGGGCATTGCTAACTGGCCCTATGAATTGGAAAAATAA

Upstream 100 bases:

>100_bases
TCGTCCTCTGGTCGGCAACCGTTTTGGTTGTGATAGTTTTAACTTATACTTATCGCTATACCTTACTAAGCTTATTTTCT
TTTTAAGGGGAGGGGTTTTG

Downstream 100 bases:

>100_bases
AGAAAAACACACACGTCCAAAGGGCGGGTGTGTTTTTTGTTTTAAAGCTTAGCTTTCGTTTACCGCTTTTAAAATTCTTT
CTTCATCCAAACCAATAATA

Product: rhodanese-like domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MPRSKYVFWVIIVLLLFALTGCLKAGYKDLEPDEAKKLIDENPMLLIMDVREPYEYAEARIPGSHNIPMGEVEQQLPNID
KEQEILVVCETGSRSASIAQMLVSKGYKHVYNLKGGIANWPYELEK

Sequences:

>Translated_126_residues
MPRSKYVFWVIIVLLLFALTGCLKAGYKDLEPDEAKKLIDENPMLLIMDVREPYEYAEARIPGSHNIPMGEVEQQLPNID
KEQEILVVCETGSRSASIAQMLVSKGYKHVYNLKGGIANWPYELEK
>Mature_125_residues
PRSKYVFWVIIVLLLFALTGCLKAGYKDLEPDEAKKLIDENPMLLIMDVREPYEYAEARIPGSHNIPMGEVEQQLPNIDK
EQEILVVCETGSRSASIAQMLVSKGYKHVYNLKGGIANWPYELEK

Specific function: Unknown

COG id: COG0607

COG function: function code P; Rhodanese-related sulfurtransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR001455 [H]

Pfam domain/function: PF00581 Rhodanese; PF01206 SirA [H]

EC number: NA

Molecular weight: Translated: 14342; Mature: 14211

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRSKYVFWVIIVLLLFALTGCLKAGYKDLEPDEAKKLIDENPMLLIMDVREPYEYAEAR
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHC
IPGSHNIPMGEVEQQLPNIDKEQEILVVCETGSRSASIAQMLVSKGYKHVYNLKGGIANW
CCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCHHHHHHCCCCCCCC
PYELEK
CCCCCC
>Mature Secondary Structure 
PRSKYVFWVIIVLLLFALTGCLKAGYKDLEPDEAKKLIDENPMLLIMDVREPYEYAEAR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHC
IPGSHNIPMGEVEQQLPNIDKEQEILVVCETGSRSASIAQMLVSKGYKHVYNLKGGIANW
CCCCCCCCHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHCHHHHHHCCCCCCCC
PYELEK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]