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The map label for this gene is rtcB [C]

Identifier: 78044051

GI number: 78044051

Start: 148813

End: 150216

Strand: Direct

Name: rtcB [C]

Synonym: CHY_0177

Alternate gene names: 78044051

Gene position: 148813-150216 (Clockwise)

Preceding gene: 78045145

Following gene: 78043580

Centisome position: 6.2

GC content: 46.87

Gene sequence:

>1404_bases
ATGTTAAAGAAACTAAATGATTACCTTTATCGGTTGCCCAAAACCGGCAAGATGCAGGTGGAAGGATTAATAATTGCCAG
CGAAAAGCTTTTACCGGCTTTATACCGGGATGAATCGTTAAAGCAATTGCAAAATGCGGCATCGCTACCGGGGGTTTACC
GGGCGGTTTACGGCATGCCGGATTTACATGAGGGTTTTGGTTTGCCTATTGGTGGAGTAATGGCTACGGTCCTGCCCGAG
GGTTTAATTTCTGCCGGGGCGGTGGGGATGGATATAAACTGCGGGGTGCGCTTACTGACTACTCCTTTTTTAGCCGAAGA
GATTTCCCGGGAAAGACTTGCCGAATTAATAAAAGCCATTGAAAAATACGTGCCGGCAGGAGTGGGCAAAAAAAATTGGG
AAAAAGAAGTAAGGAGTCTTTTGCCCAAAGTTTTATTAAAAGGAGCTCGGGCTTTGTTAGAAGAGGGATACGGTTTTGCG
GAAGACCTTAATAAAATTGAAGAAGGCGGAGTTTTGGCTGGAGCGGAGATCAAAGCTTTATCCGAGACAGCTTTATCCCG
GGGTGCGGAGGGACTTGGAACTTTAGGTGGAGGAAATCATTTTATTGAGGTGCAGGTAGTGGCGGAAGTAAGGCGGTGGG
AGGTTGCTCAGAGTTTTGGGTTATATCCGGGGATGTTATGCTTGATGGTTCACACCGGTAGCCGCGGGCTTGGGCATCAG
GTTTGTACCGACTATACCGAAATTTTATATAAAGCTGGACCGAAATACAATGTCAGTGTACCGGTAAAAGGTTTGGCGGC
GGTACCGTTTTCTTCTCCTGAAGGACAGAGGTATTATCAGGCGATGTTGGCTTCCGCAAATTTTGCTTATGCCAACCGGC
AGCTTATTACCCATTACTTAAGACAGGTGTTTAAGTCATACCTCGGAGACGGAAAGCTTGATTTAGTTTATGATTTAGCC
CATAATATTGCTAAAGAGGAGTACCACGATGGGATCAAGGTTTTAGTCCACCGCAAGGGTGCTACCAGAGCCTTACCGGC
CGGGCACCGGGAAAACTTACCTCAATTTCGGGAAATAGGCCAGCCGGTATTAATTCCCGGAAGCATGGGTACCAAATCGT
ACGTCCTGCGGGCCACTTCAAATATTTCTTTAACTTTTAACTCTTTAAACCACGGAGCGGGTCGCAGTATGTCCCGGAAA
GCTTCTTTAAAGAACTTGACGGTGAGCGAAGTAAAAAAGGCGTTAGGAGATGTTATTTTAAATGAAAAAGTGGAATACGT
GCGGGATGAAGCGCCGCAGGCGTACAAGGACATAGATTTGGTAATCGAGGCGGTGGTGGGGGCCGGTTTGGCCGAAGTGG
TAGCGGTTTTAAAACCGCTTGCGGTGATTAAAGGTAAGGATTAA

Upstream 100 bases:

>100_bases
GCCAGGACTTTCGGTAACCGCTTCAATTGGATTTACCCAACTCTTAGAGGTTGGGTTTTTCTTTTGCCTCTGGTACAATT
AAAATCTGGAGGTAATTTGT

Downstream 100 bases:

>100_bases
AAAAAGGGGGATTTTTATGTGTGAAGCCAGTGCTTTTATCGTAAATGGGGATAAGGAAGAGCTTTTTTTGGAACGGGTGG
ATAAGCTTATTCCGACAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MLKKLNDYLYRLPKTGKMQVEGLIIASEKLLPALYRDESLKQLQNAASLPGVYRAVYGMPDLHEGFGLPIGGVMATVLPE
GLISAGAVGMDINCGVRLLTTPFLAEEISRERLAELIKAIEKYVPAGVGKKNWEKEVRSLLPKVLLKGARALLEEGYGFA
EDLNKIEEGGVLAGAEIKALSETALSRGAEGLGTLGGGNHFIEVQVVAEVRRWEVAQSFGLYPGMLCLMVHTGSRGLGHQ
VCTDYTEILYKAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASANFAYANRQLITHYLRQVFKSYLGDGKLDLVYDLA
HNIAKEEYHDGIKVLVHRKGATRALPAGHRENLPQFREIGQPVLIPGSMGTKSYVLRATSNISLTFNSLNHGAGRSMSRK
ASLKNLTVSEVKKALGDVILNEKVEYVRDEAPQAYKDIDLVIEAVVGAGLAEVVAVLKPLAVIKGKD

Sequences:

>Translated_467_residues
MLKKLNDYLYRLPKTGKMQVEGLIIASEKLLPALYRDESLKQLQNAASLPGVYRAVYGMPDLHEGFGLPIGGVMATVLPE
GLISAGAVGMDINCGVRLLTTPFLAEEISRERLAELIKAIEKYVPAGVGKKNWEKEVRSLLPKVLLKGARALLEEGYGFA
EDLNKIEEGGVLAGAEIKALSETALSRGAEGLGTLGGGNHFIEVQVVAEVRRWEVAQSFGLYPGMLCLMVHTGSRGLGHQ
VCTDYTEILYKAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASANFAYANRQLITHYLRQVFKSYLGDGKLDLVYDLA
HNIAKEEYHDGIKVLVHRKGATRALPAGHRENLPQFREIGQPVLIPGSMGTKSYVLRATSNISLTFNSLNHGAGRSMSRK
ASLKNLTVSEVKKALGDVILNEKVEYVRDEAPQAYKDIDLVIEAVVGAGLAEVVAVLKPLAVIKGKD
>Mature_467_residues
MLKKLNDYLYRLPKTGKMQVEGLIIASEKLLPALYRDESLKQLQNAASLPGVYRAVYGMPDLHEGFGLPIGGVMATVLPE
GLISAGAVGMDINCGVRLLTTPFLAEEISRERLAELIKAIEKYVPAGVGKKNWEKEVRSLLPKVLLKGARALLEEGYGFA
EDLNKIEEGGVLAGAEIKALSETALSRGAEGLGTLGGGNHFIEVQVVAEVRRWEVAQSFGLYPGMLCLMVHTGSRGLGHQ
VCTDYTEILYKAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASANFAYANRQLITHYLRQVFKSYLGDGKLDLVYDLA
HNIAKEEYHDGIKVLVHRKGATRALPAGHRENLPQFREIGQPVLIPGSMGTKSYVLRATSNISLTFNSLNHGAGRSMSRK
ASLKNLTVSEVKKALGDVILNEKVEYVRDEAPQAYKDIDLVIEAVVGAGLAEVVAVLKPLAVIKGKD

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=498, Percent_Identity=38.7550200803213, Blast_Score=311, Evalue=9e-85,
Organism=Escherichia coli, GI2367224, Length=442, Percent_Identity=31.447963800905, Blast_Score=164, Evalue=1e-41,
Organism=Caenorhabditis elegans, GI17506665, Length=499, Percent_Identity=38.6773547094188, Blast_Score=303, Evalue=1e-82,
Organism=Drosophila melanogaster, GI24585217, Length=497, Percent_Identity=37.4245472837022, Blast_Score=276, Evalue=2e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 50742; Mature: 50742

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKLNDYLYRLPKTGKMQVEGLIIASEKLLPALYRDESLKQLQNAASLPGVYRAVYGMP
CCCHHHHHHHHCCCCCCEEEEEEEEECHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCC
DLHEGFGLPIGGVMATVLPEGLISAGAVGMDINCGVRLLTTPFLAEEISRERLAELIKAI
CCHHCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EKYVPAGVGKKNWEKEVRSLLPKVLLKGARALLEEGYGFAEDLNKIEEGGVLAGAEIKAL
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEECCHHHHH
SETALSRGAEGLGTLGGGNHFIEVQVVAEVRRWEVAQSFGLYPGMLCLMVHTGSRGLGHQ
HHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHEEECCCCCCCHH
VCTDYTEILYKAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASANFAYANRQLITHYL
HHHHHHHHHHHCCCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHH
RQVFKSYLGDGKLDLVYDLAHNIAKEEYHDGIKVLVHRKGATRALPAGHRENLPQFREIG
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHCC
QPVLIPGSMGTKSYVLRATSNISLTFNSLNHGAGRSMSRKASLKNLTVSEVKKALGDVIL
CCEEECCCCCCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
NEKVEYVRDEAPQAYKDIDLVIEAVVGAGLAEVVAVLKPLAVIKGKD
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLKKLNDYLYRLPKTGKMQVEGLIIASEKLLPALYRDESLKQLQNAASLPGVYRAVYGMP
CCCHHHHHHHHCCCCCCEEEEEEEEECHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHCCC
DLHEGFGLPIGGVMATVLPEGLISAGAVGMDINCGVRLLTTPFLAEEISRERLAELIKAI
CCHHCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EKYVPAGVGKKNWEKEVRSLLPKVLLKGARALLEEGYGFAEDLNKIEEGGVLAGAEIKAL
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEECCHHHHH
SETALSRGAEGLGTLGGGNHFIEVQVVAEVRRWEVAQSFGLYPGMLCLMVHTGSRGLGHQ
HHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHEEECCCCCCCHH
VCTDYTEILYKAGPKYNVSVPVKGLAAVPFSSPEGQRYYQAMLASANFAYANRQLITHYL
HHHHHHHHHHHCCCCCEEECCCCCEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHH
RQVFKSYLGDGKLDLVYDLAHNIAKEEYHDGIKVLVHRKGATRALPAGHRENLPQFREIG
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHCC
QPVLIPGSMGTKSYVLRATSNISLTFNSLNHGAGRSMSRKASLKNLTVSEVKKALGDVIL
CCEEECCCCCCCCEEEEECCCEEEEEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
NEKVEYVRDEAPQAYKDIDLVIEAVVGAGLAEVVAVLKPLAVIKGKD
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA