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The map label for this gene is abrB [H]

Identifier: 78043943

GI number: 78043943

Start: 2330815

End: 2331069

Strand: Direct

Name: abrB [H]

Synonym: CHY_2622

Alternate gene names: 78043943

Gene position: 2330815-2331069 (Clockwise)

Preceding gene: 78042723

Following gene: 78043630

Centisome position: 97.06

GC content: 41.18

Gene sequence:

>255_bases
ATGAAATCTACCGGAATAGTCAGAAAAGTAGACGAGCTGGGCCGGGTAGTAATCCCCATTGAGCTGAGAAGAACTTTGGG
CATCGAAGAAAAGGATGCTCTGGAAATTTACGTAGACAACGAAAAAATTATTCTCAAAAAGTATGAACCGGCTTGCATTT
TCTGCGGTAACGCTGCAAACGTCCATCACTACAAAGGAAAGCTCATTTGCACCGATTGTTTAAAGGCTTTATCCGAAGAA
GCAAAAGCTATTTAA

Upstream 100 bases:

>100_bases
AAAATTGGACAAACCTTATTGACTATTAGAGTTAACTTTGGTAATATTTAGTTGAAAAAATTTTGTCGAAAATTGCAATA
ATAAAGGAGGAGAATTCATA

Downstream 100 bases:

>100_bases
AAAGCGGAAGTTAACGCTTCCGCTTTTACTTTTTCTTTCTGGTACCAGTTTAAAAACTTAGAAAAAATCTCTTTTTCCTC
CTGACCGTAAACTTTTAGAA

Product: AbrB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 84; Mature: 84

Protein sequence:

>84_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIEEKDALEIYVDNEKIILKKYEPACIFCGNAANVHHYKGKLICTDCLKALSEE
AKAI

Sequences:

>Translated_84_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIEEKDALEIYVDNEKIILKKYEPACIFCGNAANVHHYKGKLICTDCLKALSEE
AKAI
>Mature_84_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIEEKDALEIYVDNEKIILKKYEPACIFCGNAANVHHYKGKLICTDCLKALSEE
AKAI

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 9430; Mature: 9430

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
4.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIEEKDALEIYVDNEKIILKKYEPACIFCGNAAN
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCC
VHHYKGKLICTDCLKALSEEAKAI
CEEECCCEEHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIEEKDALEIYVDNEKIILKKYEPACIFCGNAAN
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCEEEEECCCCC
VHHYKGKLICTDCLKALSEEAKAI
CEEECCCEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]