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The map label for this gene is 78043337

Identifier: 78043337

GI number: 78043337

Start: 334403

End: 334654

Strand: Direct

Name: 78043337

Synonym: CHY_0389

Alternate gene names: NA

Gene position: 334403-334654 (Clockwise)

Preceding gene: 78043476

Following gene: 78045064

Centisome position: 13.92

GC content: 46.43

Gene sequence:

>252_bases
ATGACCAAAACATTGTATGTTGGAAACTTACCCTGGAAAATCCGGTCAGAGCAGTTACAGGAAATAGCTTCGGAGTTTGG
GGAAGTTATAGGAGCTCGGGTAATCCTTGAAAAGAGCACCGGTCGTTCCAGGGGATACGGCTTTATTGAAGTGCGGGATG
AAGATGCGGAAAAATTTATGACCGGATTAAATGGCAAAGAAGTTGAAGGGCGACAGTTGGTAGTTAGCGAAGCCCGGGAG
CGGAATGGTTAA

Upstream 100 bases:

>100_bases
GATTATATTGTTGCAAATAATTTATACCGGTAATTTTGTATGAACCGGGCTGGCCGGTCCATAATAAGAATACAAAATAA
ACAGGTGAAGGTGGTATCTG

Downstream 100 bases:

>100_bases
CCCCCGATTTTGCGGGGGTTTTTTCCGGTTTAAGGGGGATGGGTTGTGAAAAGATTTTTACGGATTTTACAGGAAAACCT
TTCGGAAGAAAGAATAAGTC

Product: RNA-binding protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MTKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMTGLNGKEVEGRQLVVSEARE
RNG

Sequences:

>Translated_83_residues
MTKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMTGLNGKEVEGRQLVVSEARE
RNG
>Mature_82_residues
TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMTGLNGKEVEGRQLVVSEARER
NG

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=42.6829268292683, Blast_Score=67, Evalue=2e-12,
Organism=Homo sapiens, GI4557493, Length=82, Percent_Identity=42.6829268292683, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6321599, Length=71, Percent_Identity=45.0704225352113, Blast_Score=64, Evalue=6e-12,
Organism=Drosophila melanogaster, GI17137710, Length=77, Percent_Identity=38.961038961039, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582417, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI45550943, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24582419, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24582423, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24582421, Length=78, Percent_Identity=41.025641025641, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9362; Mature: 9231

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFM
CCCEEEECCCCCEECHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCHHHHH
TGLNGKEVEGRQLVVSEARERNG
HCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TKTLYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFM
CCEEEECCCCCEECHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCHHHHH
TGLNGKEVEGRQLVVSEARERNG
HCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA