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The map label for this gene is ytrP [H]

Identifier: 78043307

GI number: 78043307

Start: 619842

End: 621803

Strand: Direct

Name: ytrP [H]

Synonym: CHY_0705

Alternate gene names: 78043307

Gene position: 619842-621803 (Clockwise)

Preceding gene: 78042986

Following gene: 78045082

Centisome position: 25.81

GC content: 41.23

Gene sequence:

>1962_bases
ATGCCGAAAACGATTAAATACCGTTTAATTTTCTTTCTAACCCTGACAACGGTAATTGTGGGAATTATCAGTTTTGGTTT
TACCCACTATCGCGAAATAAAAGTGGCTGAAGAACTGGGGCTTAGTGCGTCCCGGGAGCTGGCCAATTTATTTAGGGAAC
AAATTAATAACTTGGCTAATAAAGCTTATGCAGATATCTGGTGGAGTTATGATTTGGCGGAGGGTCTTTTAAAAGGTCTA
CCTTCCAATGAGTATTACCGGGAAATTGAAAACAAAATTATTAAATCCTTGGCAGCCCGGAAAGGTTTTATCGAGGTTAT
CGATGACCAGGGCAATGTTATTTACAGTCAGGGGCTAAAGCTTGCTCCGGCGTATTTTAAATATTTGGTATATAAGCCTG
CAATGATGGGCAGTGTTTCTGGATTTTATGAAATCGCCGACCTTTTGGGAAAAAAGCATATAACTTATCTCAGGGCTGAG
CAGGTTTTAAATGAAGAAGGGAAACCTCTGGGAGTAATAGTTGTCGGATACAGTTTGGAGGAAAACCAGGTCCTCTTTAC
GGAGTTATTTACCCAGGAATTGCAGAAACAAAAATTATTGCCGGGTGTAATCCTGTACTGGAAAAATAAGCCTTTATGGC
ATTTTGGAGATGTCAGATTTGAACCGCTTCTCGGAGAGCAGATTAAGAAACTGCAAAAGGAGAACATGTTGACGGAAATT
CGGATAATTGACGGTAAAAGATTTTACGTTTCCTATCTACCGCTGGAAAACCGCAATTCGAGTTTACTAACATTGGGAGT
ATTTTTACCTGCCGATTTGTTGGTCAGGCCTTATAGAATAAGTTTTTGGCAGGGGTTACTGATTTATATCGTCCTGCTGG
GTTTACTGGTGGTACTGGGGATTTATGTAATCATCGGTCGCCAATTGGAAAAGCCCTTAAACGAGTTAATGGAGGTACTT
ATCGGCTGGATTGAGGGGAAGGATCTAAACTTTACGGAGTATCAAGAAAAATATCCGGAGTATAAAAAGCTTTTTAAGCG
AATTTACGACTTAAAAACTACCAAAGAAAAAATAGCCAATCAATGGTACCGGCTGGCCGAAGGAGTTTATAATTTAGGCG
AAGCGGCCAATGACGGAGATTTGGTCAAAGAGCTGGTTTTTCATATTAAATCACTGGTAGAAGTGAAGGGAATAAAAATA
CTCCTGAAAAATTTGAAAAGCGACGAATATTTTCCCCTTTATACAGAAGGGCAGGTGGCAACCGGGCACCCGGCGTTTTG
CCCGGATAACGGGGAATATCAAGACGGTACTTACTGTTACCCCATTACCCTGGGAAGCGAGAAACTGGGGTTTATTATTA
TTGCGGCCGATAAGGATAAACTTACCGAGGAAGCACGGGAATTTTTAAACAACTTGATCCTAATGAGCGGACCTCTGGTA
AAGCTTTACCTTTTAAAAAATTACCTGGCGGAAATTTCGCTGCGAGATCCGCTAACGCAGGCGTTTAACCGGAGATTTTT
GGAAGATGCGATTTTGGAAAACAGGGATTGCAATTATTCCCTTATTTTCATCGACCTTGATAAGTTTAAAGAAATTAACG
ATACTTACGGCCATAATGCTGGCGATCTGGTTTTAATTAAGCTTACCCAAAAAATTAGGGAAAATTTAAGAAGCCAGGAC
CAGGTAATCAGGATGGGTGGGGATGAGATTTTAATTTACCTTCCCAATACCCCTATTGAACTCACCCGGGAAATAGCCAA
CCGCATAATGGAATTAATTAGAAAGGAACAGTTTACGGTTATGAAAGATACCAAAACGGTTACCTTCAATGTTTCGGCCA
GTATGGGTATCGGAAGCTGCCGGGAAGGAGAAAGTTTTGAGGAAGTTTTAGCGCGGGTGGATAAAGCCCTTTACCGGGCC
AAAGAACTGGGTAGAAACCAAATTGTGGTGGCCGCTGATTAA

Upstream 100 bases:

>100_bases
TAAAAAGGCTGCCTGATTTAAAGGCAGCCTCTTTTTTTATGTTGTTTTTTAGTATATTATATAGTTAAATTATAGCTATT
TTTTATATCTGGTGAGAAAA

Downstream 100 bases:

>100_bases
GTTAATGTATACAAGATATTTTTTGAATTAACCTTGTCATAAAATTAAATATTCATTATAATTTTACTACAACTTACCGG
CACAACGGCGTGTCGGAAAT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 652

Protein sequence:

>653_residues
MPKTIKYRLIFFLTLTTVIVGIISFGFTHYREIKVAEELGLSASRELANLFREQINNLANKAYADIWWSYDLAEGLLKGL
PSNEYYREIENKIIKSLAARKGFIEVIDDQGNVIYSQGLKLAPAYFKYLVYKPAMMGSVSGFYEIADLLGKKHITYLRAE
QVLNEEGKPLGVIVVGYSLEENQVLFTELFTQELQKQKLLPGVILYWKNKPLWHFGDVRFEPLLGEQIKKLQKENMLTEI
RIIDGKRFYVSYLPLENRNSSLLTLGVFLPADLLVRPYRISFWQGLLIYIVLLGLLVVLGIYVIIGRQLEKPLNELMEVL
IGWIEGKDLNFTEYQEKYPEYKKLFKRIYDLKTTKEKIANQWYRLAEGVYNLGEAANDGDLVKELVFHIKSLVEVKGIKI
LLKNLKSDEYFPLYTEGQVATGHPAFCPDNGEYQDGTYCYPITLGSEKLGFIIIAADKDKLTEEAREFLNNLILMSGPLV
KLYLLKNYLAEISLRDPLTQAFNRRFLEDAILENRDCNYSLIFIDLDKFKEINDTYGHNAGDLVLIKLTQKIRENLRSQD
QVIRMGGDEILIYLPNTPIELTREIANRIMELIRKEQFTVMKDTKTVTFNVSASMGIGSCREGESFEEVLARVDKALYRA
KELGRNQIVVAAD

Sequences:

>Translated_653_residues
MPKTIKYRLIFFLTLTTVIVGIISFGFTHYREIKVAEELGLSASRELANLFREQINNLANKAYADIWWSYDLAEGLLKGL
PSNEYYREIENKIIKSLAARKGFIEVIDDQGNVIYSQGLKLAPAYFKYLVYKPAMMGSVSGFYEIADLLGKKHITYLRAE
QVLNEEGKPLGVIVVGYSLEENQVLFTELFTQELQKQKLLPGVILYWKNKPLWHFGDVRFEPLLGEQIKKLQKENMLTEI
RIIDGKRFYVSYLPLENRNSSLLTLGVFLPADLLVRPYRISFWQGLLIYIVLLGLLVVLGIYVIIGRQLEKPLNELMEVL
IGWIEGKDLNFTEYQEKYPEYKKLFKRIYDLKTTKEKIANQWYRLAEGVYNLGEAANDGDLVKELVFHIKSLVEVKGIKI
LLKNLKSDEYFPLYTEGQVATGHPAFCPDNGEYQDGTYCYPITLGSEKLGFIIIAADKDKLTEEAREFLNNLILMSGPLV
KLYLLKNYLAEISLRDPLTQAFNRRFLEDAILENRDCNYSLIFIDLDKFKEINDTYGHNAGDLVLIKLTQKIRENLRSQD
QVIRMGGDEILIYLPNTPIELTREIANRIMELIRKEQFTVMKDTKTVTFNVSASMGIGSCREGESFEEVLARVDKALYRA
KELGRNQIVVAAD
>Mature_652_residues
PKTIKYRLIFFLTLTTVIVGIISFGFTHYREIKVAEELGLSASRELANLFREQINNLANKAYADIWWSYDLAEGLLKGLP
SNEYYREIENKIIKSLAARKGFIEVIDDQGNVIYSQGLKLAPAYFKYLVYKPAMMGSVSGFYEIADLLGKKHITYLRAEQ
VLNEEGKPLGVIVVGYSLEENQVLFTELFTQELQKQKLLPGVILYWKNKPLWHFGDVRFEPLLGEQIKKLQKENMLTEIR
IIDGKRFYVSYLPLENRNSSLLTLGVFLPADLLVRPYRISFWQGLLIYIVLLGLLVVLGIYVIIGRQLEKPLNELMEVLI
GWIEGKDLNFTEYQEKYPEYKKLFKRIYDLKTTKEKIANQWYRLAEGVYNLGEAANDGDLVKELVFHIKSLVEVKGIKIL
LKNLKSDEYFPLYTEGQVATGHPAFCPDNGEYQDGTYCYPITLGSEKLGFIIIAADKDKLTEEAREFLNNLILMSGPLVK
LYLLKNYLAEISLRDPLTQAFNRRFLEDAILENRDCNYSLIFIDLDKFKEINDTYGHNAGDLVLIKLTQKIRENLRSQDQ
VIRMGGDEILIYLPNTPIELTREIANRIMELIRKEQFTVMKDTKTVTFNVSASMGIGSCREGESFEEVLARVDKALYRAK
ELGRNQIVVAAD

Specific function: Unknown

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=179, Percent_Identity=35.195530726257, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI87081881, Length=221, Percent_Identity=31.6742081447964, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=182, Percent_Identity=35.1648351648352, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI145693134, Length=177, Percent_Identity=37.2881355932203, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI1788381, Length=232, Percent_Identity=29.7413793103448, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1787262, Length=184, Percent_Identity=32.6086956521739, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787802, Length=175, Percent_Identity=29.7142857142857, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87081974, Length=181, Percent_Identity=33.1491712707182, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1787816, Length=158, Percent_Identity=31.6455696202532, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787541, Length=160, Percent_Identity=32.5, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787056, Length=178, Percent_Identity=28.0898876404494, Blast_Score=70, Evalue=6e-13,
Organism=Escherichia coli, GI87081977, Length=250, Percent_Identity=29.6, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=27.3809523809524, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1788956, Length=159, Percent_Identity=30.188679245283, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003018 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 75131; Mature: 75000

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKTIKYRLIFFLTLTTVIVGIISFGFTHYREIKVAEELGLSASRELANLFREQINNLAN
CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KAYADIWWSYDLAEGLLKGLPSNEYYREIENKIIKSLAARKGFIEVIDDQGNVIYSQGLK
HHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCC
LAPAYFKYLVYKPAMMGSVSGFYEIADLLGKKHITYLRAEQVLNEEGKPLGVIVVGYSLE
CCHHHHHHHHHCCHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEECC
ENQVLFTELFTQELQKQKLLPGVILYWKNKPLWHFGDVRFEPLLGEQIKKLQKENMLTEI
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCEEECHHHHHHHHHHHHHCCEEEE
RIIDGKRFYVSYLPLENRNSSLLTLGVFLPADLLVRPYRISFWQGLLIYIVLLGLLVVLG
EEECCCEEEEEEECCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IYVIIGRQLEKPLNELMEVLIGWIEGKDLNFTEYQEKYPEYKKLFKRIYDLKTTKEKIAN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
QWYRLAEGVYNLGEAANDGDLVKELVFHIKSLVEVKGIKILLKNLKSDEYFPLYTEGQVA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEC
TGHPAFCPDNGEYQDGTYCYPITLGSEKLGFIIIAADKDKLTEEAREFLNNLILMSGPLV
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHH
KLYLLKNYLAEISLRDPLTQAFNRRFLEDAILENRDCNYSLIFIDLDKFKEINDTYGHNA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCC
GDLVLIKLTQKIRENLRSQDQVIRMGGDEILIYLPNTPIELTREIANRIMELIRKEQFTV
CCEEEEHHHHHHHHHHCCHHHEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEE
MKDTKTVTFNVSASMGIGSCREGESFEEVLARVDKALYRAKELGRNQIVVAAD
EECCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure 
PKTIKYRLIFFLTLTTVIVGIISFGFTHYREIKVAEELGLSASRELANLFREQINNLAN
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KAYADIWWSYDLAEGLLKGLPSNEYYREIENKIIKSLAARKGFIEVIDDQGNVIYSQGLK
HHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCC
LAPAYFKYLVYKPAMMGSVSGFYEIADLLGKKHITYLRAEQVLNEEGKPLGVIVVGYSLE
CCHHHHHHHHHCCHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEECC
ENQVLFTELFTQELQKQKLLPGVILYWKNKPLWHFGDVRFEPLLGEQIKKLQKENMLTEI
CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCEEECHHHHHHHHHHHHHCCEEEE
RIIDGKRFYVSYLPLENRNSSLLTLGVFLPADLLVRPYRISFWQGLLIYIVLLGLLVVLG
EEECCCEEEEEEECCCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
IYVIIGRQLEKPLNELMEVLIGWIEGKDLNFTEYQEKYPEYKKLFKRIYDLKTTKEKIAN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
QWYRLAEGVYNLGEAANDGDLVKELVFHIKSLVEVKGIKILLKNLKSDEYFPLYTEGQVA
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEEC
TGHPAFCPDNGEYQDGTYCYPITLGSEKLGFIIIAADKDKLTEEAREFLNNLILMSGPLV
CCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCHH
KLYLLKNYLAEISLRDPLTQAFNRRFLEDAILENRDCNYSLIFIDLDKFKEINDTYGHNA
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHCCCCC
GDLVLIKLTQKIRENLRSQDQVIRMGGDEILIYLPNTPIELTREIANRIMELIRKEQFTV
CCEEEEHHHHHHHHHHCCHHHEEEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEE
MKDTKTVTFNVSASMGIGSCREGESFEEVLARVDKALYRAKELGRNQIVVAAD
EECCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1699930; 9387221; 9384377 [H]