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The map label for this gene is ymdB [C]

Identifier: 78043303

GI number: 78043303

Start: 512094

End: 512639

Strand: Direct

Name: ymdB [C]

Synonym: CHY_0594

Alternate gene names: 78043303

Gene position: 512094-512639 (Clockwise)

Preceding gene: 78042621

Following gene: 78044261

Centisome position: 21.32

GC content: 43.77

Gene sequence:

>546_bases
ATGGAGAAAAAAGTTGGGAATTCGAAAATTATTTTAAAACTTGGTGATATAACCAAAGAAAAGGTTGATGCTATTGTTAA
TGCTGCTAATTCAAGGCTTGCCGGTGGAGGTGGGGTTGATGGGGCCATTCACCGGGCCGGTGGGCCGAAAATTATGGAAG
AATGCCGGGAAATAATTAATAAAATAGGTGTTTTACCTCCCGGGGAAGCGGTAGCCACAACCGCCGGAAATTTACCGGCA
AAGTACGTAATTCATACCGTAGGGCCCATTTACCGTGGTGGCCAAAAGGGTGAGGAAAATACTTTAAGGAACGCCTATTT
AAATTCCCTGAAATTAGCAAAGCAGTTAAATGTCAAGACGATTGCGTTTCCTTCAATAAGCACGGGAGCTTATGGTTACC
CAGTTAAGGATGCGGCGAGGGTAGCCCTGAAAGCTGTGATAGAGTTTTTAGAAGGAGAACCGGAAGATTTTACCGTGGTT
TTTGTGCTGTTTGACGAAATTACTTATGCTGCCTACCAGGAGGCTCTGGAAGCCTATTTAAAGTAA

Upstream 100 bases:

>100_bases
TCACCGGTATATACCGGTGATTTAATTTTGTGCGCTTTTAATTTAGTAAAAATAAAGGAATTTTTACGATAATTGCCGAA
TTAAAAATAAGGGTGAGAGT

Downstream 100 bases:

>100_bases
AGAAGGGAGAAGGAAGATGAAAGTTTTTGCTTTAATGGGAAGCCCGCGGGAGGGGAGTAATACCGACATTTTAATTGAGG
AAGCACTAAAGCCTGCCAGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MEKKVGNSKIILKLGDITKEKVDAIVNAANSRLAGGGGVDGAIHRAGGPKIMEECREIINKIGVLPPGEAVATTAGNLPA
KYVIHTVGPIYRGGQKGEENTLRNAYLNSLKLAKQLNVKTIAFPSISTGAYGYPVKDAARVALKAVIEFLEGEPEDFTVV
FVLFDEITYAAYQEALEAYLK

Sequences:

>Translated_181_residues
MEKKVGNSKIILKLGDITKEKVDAIVNAANSRLAGGGGVDGAIHRAGGPKIMEECREIINKIGVLPPGEAVATTAGNLPA
KYVIHTVGPIYRGGQKGEENTLRNAYLNSLKLAKQLNVKTIAFPSISTGAYGYPVKDAARVALKAVIEFLEGEPEDFTVV
FVLFDEITYAAYQEALEAYLK
>Mature_181_residues
MEKKVGNSKIILKLGDITKEKVDAIVNAANSRLAGGGGVDGAIHRAGGPKIMEECREIINKIGVLPPGEAVATTAGNLPA
KYVIHTVGPIYRGGQKGEENTLRNAYLNSLKLAKQLNVKTIAFPSISTGAYGYPVKDAARVALKAVIEFLEGEPEDFTVV
FVLFDEITYAAYQEALEAYLK

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=180, Percent_Identity=46.1111111111111, Blast_Score=149, Evalue=1e-36,
Organism=Homo sapiens, GI13569840, Length=176, Percent_Identity=45.4545454545455, Blast_Score=140, Evalue=6e-34,
Organism=Homo sapiens, GI154813199, Length=176, Percent_Identity=32.9545454545455, Blast_Score=101, Evalue=4e-22,
Organism=Homo sapiens, GI207450721, Length=175, Percent_Identity=33.1428571428571, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI8923143, Length=175, Percent_Identity=33.1428571428571, Blast_Score=97, Evalue=6e-21,
Organism=Homo sapiens, GI226371718, Length=171, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=6e-20,
Organism=Homo sapiens, GI226371710, Length=171, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI226371706, Length=171, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI226371716, Length=171, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=1e-19,
Organism=Homo sapiens, GI226371714, Length=171, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=1e-19,
Organism=Homo sapiens, GI226371712, Length=171, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=1e-19,
Organism=Homo sapiens, GI20336746, Length=163, Percent_Identity=34.9693251533742, Blast_Score=85, Evalue=4e-17,
Organism=Homo sapiens, GI93141018, Length=158, Percent_Identity=33.5443037974684, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI93141020, Length=157, Percent_Identity=33.7579617834395, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI4758496, Length=157, Percent_Identity=33.7579617834395, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI8923920, Length=173, Percent_Identity=28.9017341040462, Blast_Score=69, Evalue=3e-12,
Organism=Escherichia coli, GI1787283, Length=169, Percent_Identity=50.2958579881657, Blast_Score=171, Evalue=3e-44,
Organism=Caenorhabditis elegans, GI17538214, Length=174, Percent_Identity=46.551724137931, Blast_Score=124, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24586353, Length=146, Percent_Identity=35.6164383561644, Blast_Score=91, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 19378; Mature: 19378

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKVGNSKIILKLGDITKEKVDAIVNAANSRLAGGGGVDGAIHRAGGPKIMEECREIIN
CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHH
KIGVLPPGEAVATTAGNLPAKYVIHTVGPIYRGGQKGEENTLRNAYLNSLKLAKQLNVKT
HHCCCCCCCHHCCCCCCCCHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
IAFPSISTGAYGYPVKDAARVALKAVIEFLEGEPEDFTVVFVLFDEITYAAYQEALEAYL
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHC
K
C
>Mature Secondary Structure
MEKKVGNSKIILKLGDITKEKVDAIVNAANSRLAGGGGVDGAIHRAGGPKIMEECREIIN
CCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCEECCCCHHHHHHHHHHHH
KIGVLPPGEAVATTAGNLPAKYVIHTVGPIYRGGQKGEENTLRNAYLNSLKLAKQLNVKT
HHCCCCCCCHHCCCCCCCCHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEE
IAFPSISTGAYGYPVKDAARVALKAVIEFLEGEPEDFTVVFVLFDEITYAAYQEALEAYL
EECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]