BacMap

Definition	Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome.
Accession	NC_007503
Length	2,401,520

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The map label for this gene is yhcH [H]

Identifier: 78043273

GI number: 78043273

Start: 393854

End: 394684

Strand: Direct

Name: yhcH [H]

Synonym: CHY_0448

Alternate gene names: 78043273

Gene position: 393854-394684 (Clockwise)

Preceding gene: 78044547

Following gene: 78044782

Centisome position: 16.4

GC content: 41.28

Gene sequence:

>831_bases
ATGGTTTTAGAAGTAAAAAACTTAAGCAAGCAGATTAGAGGCAAGCAGATTTTAAGCAATGTCTCGTTTAGCTTGGAAAA
AGGTGAGGTTTTAGCGTTAATTGGACCAAACGGTGCGGGCAAGACCACAACCATAAAATGCATTATCAATGCCCTTAAAA
AAGATGAAGGCGAAGTTATTTTATTCGGAAAGCCTTTTGCCAATGAAGTAAAGACCAGAATAGCTGTTGTCCCTGAAGAC
CGCAAGGTTTTTCGCAATTTTACCGCGGCGGATTACCGAAGTCTTTGGCAGGGCCTTTATCCTGCCTGGAATGATGCGTT
TTTTAAGGATTTTGTAGTAAGATATAACTTTAATTTAAACCAGAAAGTGGAGAGCTATTCTATAGGGCAAAGAACCCTGT
TCCTGCTTGGTCTTGCTCTATCCAGTGGAGCTGAACTTCTCTTGCTGGATGAGCCAACCCAGCATTTGGACCCTACCATT
AGAAATGAGGTTATTCATCTCATCAACCAATATGCCCGGCTTGGCAATTCCCTTTTGGTGTCGTCCCATGAGATCTTTGA
ATTAGAAGAATATGCCACTACCTTTGCCATTATCAAGAACGGAAAGGTTTTGTACACCGATTCCATTGACGACGCCAAGC
AAAAGCACCGGATAATAAGGCGGGGGGAGAGCTTTAAAGAGGGTGAGGTCATAGGGATGATTCACGATGAGATCCTTTTA
AAAACCTCCGATGATATAGGTATGTATCCCAAGTTGAATCATATTGTAGTGGGATATTTGCAGGGAAAGAGTGCCGATTT
AAATTTGGCAGAAGATTTAAAAGAAAATTAA

Upstream 100 bases:

>100_bases
CTTTACCAATCAGGGCAATATCCCCTTTGCTTTTGTATTTGCGGCGATAATTTGCTTTGCTGGCTATTGGATATATCTGA
AAAATGGTGGTGAGCTCTAA

Downstream 100 bases:

>100_bases
AATTTCCGGTACTATCGTTTCTGCTTTCAATACAGAAACAAGACCACCTGATAACACTGATACAGTTAGTATCAGTGTGC
TACAATTTGCTTTATAAAGT

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MVLEVKNLSKQIRGKQILSNVSFSLEKGEVLALIGPNGAGKTTTIKCIINALKKDEGEVILFGKPFANEVKTRIAVVPED
RKVFRNFTAADYRSLWQGLYPAWNDAFFKDFVVRYNFNLNQKVESYSIGQRTLFLLGLALSSGAELLLLDEPTQHLDPTI
RNEVIHLINQYARLGNSLLVSSHEIFELEEYATTFAIIKNGKVLYTDSIDDAKQKHRIIRRGESFKEGEVIGMIHDEILL
KTSDDIGMYPKLNHIVVGYLQGKSADLNLAEDLKEN

Sequences:

>Translated_276_residues
MVLEVKNLSKQIRGKQILSNVSFSLEKGEVLALIGPNGAGKTTTIKCIINALKKDEGEVILFGKPFANEVKTRIAVVPED
RKVFRNFTAADYRSLWQGLYPAWNDAFFKDFVVRYNFNLNQKVESYSIGQRTLFLLGLALSSGAELLLLDEPTQHLDPTI
RNEVIHLINQYARLGNSLLVSSHEIFELEEYATTFAIIKNGKVLYTDSIDDAKQKHRIIRRGESFKEGEVIGMIHDEILL
KTSDDIGMYPKLNHIVVGYLQGKSADLNLAEDLKEN
>Mature_276_residues
MVLEVKNLSKQIRGKQILSNVSFSLEKGEVLALIGPNGAGKTTTIKCIINALKKDEGEVILFGKPFANEVKTRIAVVPED
RKVFRNFTAADYRSLWQGLYPAWNDAFFKDFVVRYNFNLNQKVESYSIGQRTLFLLGLALSSGAELLLLDEPTQHLDPTI
RNEVIHLINQYARLGNSLLVSSHEIFELEEYATTFAIIKNGKVLYTDSIDDAKQKHRIIRRGESFKEGEVIGMIHDEILL
KTSDDIGMYPKLNHIVVGYLQGKSADLNLAEDLKEN

Specific function: Unknown

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI45446740, Length=230, Percent_Identity=26.0869565217391, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI47078218, Length=230, Percent_Identity=26.0869565217391, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI27436953, Length=240, Percent_Identity=27.5, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI150417984, Length=211, Percent_Identity=26.5402843601896, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27477115, Length=218, Percent_Identity=28.4403669724771, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI21536376, Length=219, Percent_Identity=25.5707762557078, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI31657092, Length=208, Percent_Identity=24.0384615384615, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI6005701, Length=202, Percent_Identity=27.7227722772277, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI27881501, Length=203, Percent_Identity=24.1379310344828, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI105990541, Length=211, Percent_Identity=24.6445497630332, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI30795238, Length=203, Percent_Identity=24.1379310344828, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI116734710, Length=224, Percent_Identity=26.3392857142857, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI90421313, Length=241, Percent_Identity=26.9709543568465, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI148612844, Length=203, Percent_Identity=28.0788177339901, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI255708477, Length=203, Percent_Identity=28.0788177339901, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI153792144, Length=250, Percent_Identity=26.8, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI87081782, Length=246, Percent_Identity=25.609756097561, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790739, Length=221, Percent_Identity=26.6968325791855, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787029, Length=224, Percent_Identity=26.7857142857143, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87082268, Length=206, Percent_Identity=28.6407766990291, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1788225, Length=221, Percent_Identity=27.6018099547511, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI48995001, Length=215, Percent_Identity=27.4418604651163, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1786398, Length=215, Percent_Identity=27.906976744186, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789672, Length=222, Percent_Identity=24.3243243243243, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI48994943, Length=256, Percent_Identity=24.609375, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789593, Length=237, Percent_Identity=23.6286919831224, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790525, Length=225, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788472, Length=223, Percent_Identity=23.7668161434978, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1786319, Length=219, Percent_Identity=26.9406392694064, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787182, Length=186, Percent_Identity=30.1075268817204, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788165, Length=187, Percent_Identity=30.4812834224599, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789991, Length=208, Percent_Identity=29.3269230769231, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787712, Length=224, Percent_Identity=25.8928571428571, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI2367384, Length=203, Percent_Identity=30.5418719211823, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790190, Length=195, Percent_Identity=31.7948717948718, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788761, Length=222, Percent_Identity=25.6756756756757, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788897, Length=224, Percent_Identity=25, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786872, Length=223, Percent_Identity=28.2511210762332, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786345, Length=244, Percent_Identity=23.3606557377049, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786803, Length=217, Percent_Identity=25.3456221198157, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786253, Length=194, Percent_Identity=26.8041237113402, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788506, Length=206, Percent_Identity=26.2135922330097, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787792, Length=210, Percent_Identity=23.8095238095238, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788450, Length=215, Percent_Identity=23.7209302325581, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786653, Length=199, Percent_Identity=24.1206030150754, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788210, Length=231, Percent_Identity=24.6753246753247, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1788053, Length=176, Percent_Identity=30.6818181818182, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=221, Percent_Identity=27.1493212669683, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71983516, Length=221, Percent_Identity=27.1493212669683, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71983510, Length=221, Percent_Identity=27.1493212669683, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17565586, Length=220, Percent_Identity=24.5454545454545, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=219, Percent_Identity=27.8538812785388, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17510237, Length=222, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24666092, Length=265, Percent_Identity=28.6792452830189, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648314, Length=221, Percent_Identity=25.7918552036199, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI221500365, Length=207, Percent_Identity=27.0531400966184, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007184, Length=207, Percent_Identity=27.0531400966184, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28574150, Length=214, Percent_Identity=30.8411214953271, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI116007328, Length=226, Percent_Identity=30.0884955752212, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24650855, Length=234, Percent_Identity=26.9230769230769, Blast_Score=81, Evalue=8e-16,
Organism=Drosophila melanogaster, GI221512771, Length=219, Percent_Identity=25.1141552511416, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24650853, Length=234, Percent_Identity=26.9230769230769, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI281362751, Length=217, Percent_Identity=27.6497695852535, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI85725262, Length=213, Percent_Identity=26.2910798122066, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24582014, Length=209, Percent_Identity=24.4019138755981, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24582012, Length=209, Percent_Identity=24.4019138755981, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643674, Length=206, Percent_Identity=23.7864077669903, Blast_Score=70, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 31130; Mature: 31130

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLEVKNLSKQIRGKQILSNVSFSLEKGEVLALIGPNGAGKTTTIKCIINALKKDEGEVI
CEEEHHHHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEE
LFGKPFANEVKTRIAVVPEDRKVFRNFTAADYRSLWQGLYPAWNDAFFKDFVVRYNFNLN
EECCCCHHHHHHEEEECCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHEEEEECCCCC
QKVESYSIGQRTLFLLGLALSSGAELLLLDEPTQHLDPTIRNEVIHLINQYARLGNSLLV
CCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCCEEE
SSHEIFELEEYATTFAIIKNGKVLYTDSIDDAKQKHRIIRRGESFKEGEVIGMIHDEILL
CCCHHHHHHHHHHEEEEEECCCEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECEEEE
KTSDDIGMYPKLNHIVVGYLQGKSADLNLAEDLKEN
EECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHCC
>Mature Secondary Structure
MVLEVKNLSKQIRGKQILSNVSFSLEKGEVLALIGPNGAGKTTTIKCIINALKKDEGEVI
CEEEHHHHHHHHHHHHHHHHCCEEECCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEE
LFGKPFANEVKTRIAVVPEDRKVFRNFTAADYRSLWQGLYPAWNDAFFKDFVVRYNFNLN
EECCCCHHHHHHEEEECCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHEEEEECCCCC
QKVESYSIGQRTLFLLGLALSSGAELLLLDEPTQHLDPTIRNEVIHLINQYARLGNSLLV
CCHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHCCCCEEE
SSHEIFELEEYATTFAIIKNGKVLYTDSIDDAKQKHRIIRRGESFKEGEVIGMIHDEILL
CCCHHHHHHHHHHEEEEEECCCEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECEEEE
KTSDDIGMYPKLNHIVVGYLQGKSADLNLAEDLKEN
EECCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]