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The map label for this gene is psd

Identifier: 78043017

GI number: 78043017

Start: 813824

End: 814465

Strand: Direct

Name: psd

Synonym: CHY_0921

Alternate gene names: 78043017

Gene position: 813824-814465 (Clockwise)

Preceding gene: 78042651

Following gene: 78043329

Centisome position: 33.89

GC content: 41.59

Gene sequence:

>642_bases
ATGAAAGAGCCACTGGTAATGTATCGCGAAGGGTTTTGGTATTTGGTTGCCTTAGGAGTTCTAACAGTATTAGGAGCTCT
TATTAATTTCTGGCTGGGCCTTTTGGTGTTTCTTTTGTTTCTTTTTGTCGTTTTTTTCTTTAGAAATCCGCGAAGAACCA
TTCCGGAAGATGAAAAAGCAATTATTTCACCGGCGGATGGTGTGGTTTTGGATGTAGCGGAAGTGAATGAAAGCTATTAC
TTAAAAGGTCCGGCGGTTAAAATCAGTATCTTTTTATCAATTTTTGATGTTCATGTCAATCGAGCCCCGGTGGAAGGACA
GGTGGAGTATGTCTACTACCGTGAGGGAAAATTTCTTCCGGCGTTTAAAAGTCACGCTTCGGAAATCAATGAACGAAATT
ACATTGGGATAAAAAATCCGTATCTTCAGGTGTTGGTGGTACAAATTACCGGTTTTATTGCCCGGCGGATTGTAAGTTTT
GTAAAACCGGGGGACATATTAAAAAAAGGACAGCTACTGGGCATGATTAAATTTGGGTCGTGTACCGAGATTTATTTGCC
GAAAGAAACGGTGGAAGTTTTGGTGCAAAAAGGCCAGCGGGTGTATGGTGGCATTACGGTTATCGGGAGGATTAAGGGAT
GA

Upstream 100 bases:

>100_bases
CTTTAGGAGTAGCAATCAAAGTATTGAATCCCGGGGAGATGGTTGTTCTTTAAAGGAAATAATGATAAAATAAACGTTAG
ATTTTCCGGCGGAGGAGTTT

Downstream 100 bases:

>100_bases
TTTTAAGGGCAATACCGTCGGTATGTACTCTTTTAAATTTAGCGATGGGCATGCTTTCAATTATTGCCACAATCAATGAG
AACTACCTATTGGCAGCGGT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKEPLVMYREGFWYLVALGVLTVLGALINFWLGLLVFLLFLFVVFFFRNPRRTIPEDEKAIISPADGVVLDVAEVNESYY
LKGPAVKISIFLSIFDVHVNRAPVEGQVEYVYYREGKFLPAFKSHASEINERNYIGIKNPYLQVLVVQITGFIARRIVSF
VKPGDILKKGQLLGMIKFGSCTEIYLPKETVEVLVQKGQRVYGGITVIGRIKG

Sequences:

>Translated_213_residues
MKEPLVMYREGFWYLVALGVLTVLGALINFWLGLLVFLLFLFVVFFFRNPRRTIPEDEKAIISPADGVVLDVAEVNESYY
LKGPAVKISIFLSIFDVHVNRAPVEGQVEYVYYREGKFLPAFKSHASEINERNYIGIKNPYLQVLVVQITGFIARRIVSF
VKPGDILKKGQLLGMIKFGSCTEIYLPKETVEVLVQKGQRVYGGITVIGRIKG
>Mature_213_residues
MKEPLVMYREGFWYLVALGVLTVLGALINFWLGLLVFLLFLFVVFFFRNPRRTIPEDEKAIISPADGVVLDVAEVNESYY
LKGPAVKISIFLSIFDVHVNRAPVEGQVEYVYYREGKFLPAFKSHASEINERNYIGIKNPYLQVLVVQITGFIARRIVSF
VKPGDILKKGQLLGMIKFGSCTEIYLPKETVEVLVQKGQRVYGGITVIGRIKG

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_CARHZ (Q3ADL6)

Other databases:

- EMBL:   CP000141
- RefSeq:   YP_359768.1
- STRING:   Q3ADL6
- GeneID:   3726470
- GenomeReviews:   CP000141_GR
- KEGG:   chy:CHY_0921
- NMPDR:   fig|246194.3.peg.323
- TIGR:   CHY_0921
- eggNOG:   COG0688
- HOGENOM:   HBG541103
- OMA:   IFMSVFN
- ProtClustDB:   PRK05305
- BioCyc:   CHYD246194:CHY_0921-MONOMER
- HAMAP:   MF_00664
- InterPro:   IPR003817
- InterPro:   IPR004428
- TIGRFAMs:   TIGR00164

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 24126; Mature: 24126

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEPLVMYREGFWYLVALGVLTVLGALINFWLGLLVFLLFLFVVFFFRNPRRTIPEDEKA
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
IISPADGVVLDVAEVNESYYLKGPAVKISIFLSIFDVHVNRAPVEGQVEYVYYREGKFLP
EECCCCCEEEEEECCCCCEEECCCCEEEEEEEEEHHHHCCCCCCCCEEEEEEEECCCCCC
AFKSHASEINERNYIGIKNPYLQVLVVQITGFIARRIVSFVKPGDILKKGQLLGMIKFGS
HHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEECC
CTEIYLPKETVEVLVQKGQRVYGGITVIGRIKG
EEEEECCHHHHHHHHHCCCEEECCEEEEEEECC
>Mature Secondary Structure
MKEPLVMYREGFWYLVALGVLTVLGALINFWLGLLVFLLFLFVVFFFRNPRRTIPEDEKA
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCE
IISPADGVVLDVAEVNESYYLKGPAVKISIFLSIFDVHVNRAPVEGQVEYVYYREGKFLP
EECCCCCEEEEEECCCCCEEECCCCEEEEEEEEEHHHHCCCCCCCCEEEEEEEECCCCCC
AFKSHASEINERNYIGIKNPYLQVLVVQITGFIARRIVSFVKPGDILKKGQLLGMIKFGS
HHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEEEEEEECC
CTEIYLPKETVEVLVQKGQRVYGGITVIGRIKG
EEEEECCHHHHHHHHHCCCEEECCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA