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The map label for this gene is rnhA

Identifier: 78043013

GI number: 78043013

Start: 756994

End: 757440

Strand: Direct

Name: rnhA

Synonym: CHY_0852

Alternate gene names: NA

Gene position: 756994-757440 (Clockwise)

Preceding gene: 78043879

Following gene: 78044759

Centisome position: 31.52

GC content: 42.06

Gene sequence:

>447_bases
ATGAAGTATAAAGTTCATATCGATGGGGGTTCCCGGGGAAACCCGGGGCCTGCCGCTTCTGCGATGGTTATTTATGACGA
AAACGGGGAAGTCCTGTATGAAAAAAGCAAATATTTAGGTATAACAACAAACAACGTGGCGGAGTGGGAAGCCCTGAAAG
GGGCTTTTTTGGCTTTGACCTTTCTTGCTCAAAAGCATGGTAAGGTTGAAGCCGAGATTTTTGCTGACAGTGAACTTATG
GTTAAGCAGTTTAACGGGCAGTATAAAGTAAGAGATGAAAAGTTAAAGGAAATATACGCTGAAGTAAAAAAATTGGCAGC
AAATCCTGCTCTAAAAGTAACTTTGTCCCATGTCTACCGGGAGAACAATAAAGCTGCGGACCGACTTGTTAATCTTGAAT
TGGACCGGCAGGAAAATGCAAACATTGACAGCGAAATTATAGAATAG

Upstream 100 bases:

>100_bases
GATTGTAACGATGCCAGTTCTGCTCCTTATGATATAAAAAACTGCGCACCTTATATTCAATATGTGGTTTATAAAGTAAA
TGAACTCCTGGGGGATTAAG

Downstream 100 bases:

>100_bases
TATAATAGAACAAAAAATTGCGAAAAATGGAGGGGAGCGGCATTATGGATTACGCCGAAATGAGTTTACAGGAGCTCCAG
GAAGAGCTAAAAAAGCTTAA

Product: ribonuclease HI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MKYKVHIDGGSRGNPGPAASAMVIYDENGEVLYEKSKYLGITTNNVAEWEALKGAFLALTFLAQKHGKVEAEIFADSELM
VKQFNGQYKVRDEKLKEIYAEVKKLAANPALKVTLSHVYRENNKAADRLVNLELDRQENANIDSEIIE

Sequences:

>Translated_148_residues
MKYKVHIDGGSRGNPGPAASAMVIYDENGEVLYEKSKYLGITTNNVAEWEALKGAFLALTFLAQKHGKVEAEIFADSELM
VKQFNGQYKVRDEKLKEIYAEVKKLAANPALKVTLSHVYRENNKAADRLVNLELDRQENANIDSEIIE
>Mature_148_residues
MKYKVHIDGGSRGNPGPAASAMVIYDENGEVLYEKSKYLGITTNNVAEWEALKGAFLALTFLAQKHGKVEAEIFADSELM
VKQFNGQYKVRDEKLKEIYAEVKKLAANPALKVTLSHVYRENNKAADRLVNLELDRQENANIDSEIIE

Specific function: Unknown

COG id: COG0328

COG function: function code L; Ribonuclease HI

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013078
- InterPro:   IPR012337
- InterPro:   IPR014636
- InterPro:   IPR002156 [H]

Pfam domain/function: PF00300 PGAM; PF00075 RnaseH [H]

EC number: NA

Molecular weight: Translated: 16603; Mature: 16603

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS50879 RNASE_H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKVHIDGGSRGNPGPAASAMVIYDENGEVLYEKSKYLGITTNNVAEWEALKGAFLALT
CEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCEEEEEECCCCHHHHHHHHHHHHHH
FLAQKHGKVEAEIFADSELMVKQFNGQYKVRDEKLKEIYAEVKKLAANPALKVTLSHVYR
HHHHHCCCEEEEEEECCHHEEHHCCCCEEECHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
ENNKAADRLVNLELDRQENANIDSEIIE
CCCCHHHHEEEEEECCCCCCCCCHHHCC
>Mature Secondary Structure
MKYKVHIDGGSRGNPGPAASAMVIYDENGEVLYEKSKYLGITTNNVAEWEALKGAFLALT
CEEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCEEEEEECCCCHHHHHHHHHHHHHH
FLAQKHGKVEAEIFADSELMVKQFNGQYKVRDEKLKEIYAEVKKLAANPALKVTLSHVYR
HHHHHCCCEEEEEEECCHHEEHHCCCCEEECHHHHHHHHHHHHHHHCCCCEEEEHHHHHH
ENNKAADRLVNLELDRQENANIDSEIIE
CCCCHHHHEEEEEECCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]