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The map label for this gene is rbcR [H]

Identifier: 78042769

GI number: 78042769

Start: 2294325

End: 2295233

Strand: Direct

Name: rbcR [H]

Synonym: CHY_2575

Alternate gene names: 78042769

Gene position: 2294325-2295233 (Clockwise)

Preceding gene: 78043607

Following gene: 78042812

Centisome position: 95.54

GC content: 45.43

Gene sequence:

>909_bases
ATGAATTTATACCAGTTTGAACTTTTCTGTCAAATTGCTAAAGTAAGGAGTTTCACAAAAGCAGCGAAATTAATGCACCT
GACCCAGCCGGCCATTTCCGCTCAGGTGCAGGCAATGGAAAATTTTTATGGCACCAAATTATTTGAGCGCTCGGCCACCG
GGGTAAAGCTTACCCCCGCCGGGGAGCTGGTTTATAAGTATGCCCAGCACTTTTTGGCCGAACACGAAAAGTTAGAAAGG
GAGATAGACAATTTACTTGGCACCAATGCCCAGACCATTGTCATTGGGGCCAGCTCCACTATCGGTAATTTTGCCCTTCC
CTGCAACGTGTGGAGCTTTAAGGAAAAGTACCCGGAAGCCAATATTCGTATCGAAGTGGATAACTCAAAGAAGGTTATTG
ATATGGTAATGGAAGATAAGGTGGATTTTGGGCTGGCGGAAGGACCGGAGTTTACCCATCCCGATCTCGAAGTAAAAAAA
GTCGGGGAAAGTCAGGTGGTAATAATCACCTCCCCCGAACTTCCCCTGGCCCGGCAAGATTCCATTACCGTTGAGGAATT
AAAAAAGCTTCCTTTGATCATGCGGGAACCGGGTTCTTCGGTGCGGGAAGTGTTTTTTGACGCAATAAAAAAAGCCGGGG
TCCCGGCCAAGGAGTTAAATATTGTTTTGGAACTGGGAAGCTTTCAAGGAGTTTTGGAAGCGGTAAAAAAAGGACACGGG
GTATCAATTTCCTGTTTGGAAGCGATTAAAAAAGAGTTCCACCGCAAAGAACTCCACTACCTTACTTTAAAAGATATGGA
ACTTACCATGCCGTTTTTGCTGGTTTACCGCAAAGACCGCGCCTTTAGCCCGCTGGCAAAAAGGTTTTTAAGGTTTATTA
TTGGGCCTGCCGCTTTAGAATTTTGTTAA

Upstream 100 bases:

>100_bases
TATACCCATAAAATTATTCTTTGAATTGTTTTTGCTAAAATTAATTTTCAGCAAAGTTATGATATAATAAATATTGATTT
AAGTGACGGGGGAAGAAAGC

Downstream 100 bases:

>100_bases
AGGATATATTTTTTTAAAAACAAGATTCCAAGATACGTACCGATAATCAGAGAACCACCAAAAATCCAGCCATGCAGCGA
AAAAGAAGCGATTCCTCCTA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MNLYQFELFCQIAKVRSFTKAAKLMHLTQPAISAQVQAMENFYGTKLFERSATGVKLTPAGELVYKYAQHFLAEHEKLER
EIDNLLGTNAQTIVIGASSTIGNFALPCNVWSFKEKYPEANIRIEVDNSKKVIDMVMEDKVDFGLAEGPEFTHPDLEVKK
VGESQVVIITSPELPLARQDSITVEELKKLPLIMREPGSSVREVFFDAIKKAGVPAKELNIVLELGSFQGVLEAVKKGHG
VSISCLEAIKKEFHRKELHYLTLKDMELTMPFLLVYRKDRAFSPLAKRFLRFIIGPAALEFC

Sequences:

>Translated_302_residues
MNLYQFELFCQIAKVRSFTKAAKLMHLTQPAISAQVQAMENFYGTKLFERSATGVKLTPAGELVYKYAQHFLAEHEKLER
EIDNLLGTNAQTIVIGASSTIGNFALPCNVWSFKEKYPEANIRIEVDNSKKVIDMVMEDKVDFGLAEGPEFTHPDLEVKK
VGESQVVIITSPELPLARQDSITVEELKKLPLIMREPGSSVREVFFDAIKKAGVPAKELNIVLELGSFQGVLEAVKKGHG
VSISCLEAIKKEFHRKELHYLTLKDMELTMPFLLVYRKDRAFSPLAKRFLRFIIGPAALEFC
>Mature_302_residues
MNLYQFELFCQIAKVRSFTKAAKLMHLTQPAISAQVQAMENFYGTKLFERSATGVKLTPAGELVYKYAQHFLAEHEKLER
EIDNLLGTNAQTIVIGASSTIGNFALPCNVWSFKEKYPEANIRIEVDNSKKVIDMVMEDKVDFGLAEGPEFTHPDLEVKK
VGESQVVIITSPELPLARQDSITVEELKKLPLIMREPGSSVREVFFDAIKKAGVPAKELNIVLELGSFQGVLEAVKKGHG
VSISCLEAIKKEFHRKELHYLTLKDMELTMPFLLVYRKDRAFSPLAKRFLRFIIGPAALEFC

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=297, Percent_Identity=30.976430976431, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=26.1168384879725, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787530, Length=251, Percent_Identity=24.3027888446215, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1787601, Length=294, Percent_Identity=24.8299319727891, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788748, Length=288, Percent_Identity=25, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI145693105, Length=298, Percent_Identity=23.489932885906, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=27.2108843537415, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=23.6301369863014, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790208, Length=247, Percent_Identity=26.3157894736842, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790399, Length=289, Percent_Identity=23.8754325259516, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1789506, Length=216, Percent_Identity=25, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787806, Length=291, Percent_Identity=23.7113402061856, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081904, Length=207, Percent_Identity=22.2222222222222, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1788887, Length=197, Percent_Identity=24.3654822335025, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI87082132, Length=298, Percent_Identity=20.8053691275168, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788296, Length=245, Percent_Identity=21.2244897959184, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=23.2931726907631, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=23.2558139534884, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789173, Length=247, Percent_Identity=25.5060728744939, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1789440, Length=169, Percent_Identity=24.8520710059172, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34025; Mature: 34025

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLYQFELFCQIAKVRSFTKAAKLMHLTQPAISAQVQAMENFYGTKLFERSATGVKLTPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCH
GELVYKYAQHFLAEHEKLEREIDNLLGTNAQTIVIGASSTIGNFALPCNVWSFKEKYPEA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCHHHHHHCCCC
NIRIEVDNSKKVIDMVMEDKVDFGLAEGPEFTHPDLEVKKVGESQVVIITSPELPLARQD
CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEECCCCEEEEEECCCCCCCCCC
SITVEELKKLPLIMREPGSSVREVFFDAIKKAGVPAKELNIVLELGSFQGVLEAVKKGHG
CCCHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCCHHHEEEEEEECCHHHHHHHHHCCCC
VSISCLEAIKKEFHRKELHYLTLKDMELTMPFLLVYRKDRAFSPLAKRFLRFIIGPAALE
CCHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHH
FC
CC
>Mature Secondary Structure
MNLYQFELFCQIAKVRSFTKAAKLMHLTQPAISAQVQAMENFYGTKLFERSATGVKLTPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCH
GELVYKYAQHFLAEHEKLEREIDNLLGTNAQTIVIGASSTIGNFALPCNVWSFKEKYPEA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEECCCCHHHHHHCCCC
NIRIEVDNSKKVIDMVMEDKVDFGLAEGPEFTHPDLEVKKVGESQVVIITSPELPLARQD
CEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEECCCCEEEEEECCCCCCCCCC
SITVEELKKLPLIMREPGSSVREVFFDAIKKAGVPAKELNIVLELGSFQGVLEAVKKGHG
CCCHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCCHHHEEEEEEECCHHHHHHHHHCCCC
VSISCLEAIKKEFHRKELHYLTLKDMELTMPFLLVYRKDRAFSPLAKRFLRFIIGPAALE
CCHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHH
FC
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]