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The map label for this gene is pdtaR [H]

Identifier: 78042745

GI number: 78042745

Start: 625412

End: 625984

Strand: Direct

Name: pdtaR [H]

Synonym: CHY_0709

Alternate gene names: 78042745

Gene position: 625412-625984 (Clockwise)

Preceding gene: 78042743

Following gene: 78043819

Centisome position: 26.04

GC content: 41.88

Gene sequence:

>573_bases
TTGGAAAATTTGAAGGTGGTTTTGGGGATCAGGGATTATACTGAGAGAAAAAGGTTTAAGGAAATATTAAGAACCATGGG
AGTTTTAATAGTAGGCGAGGGAGAGGAAATCCGAGCTCTGATAAATTTATCCTCCCGGGTTTGTCCCGATTTAGTAATCT
TGGACGAAAAGCTGGGGACTACCAAAACCCTTCCCTATACCAAAATATTTTATGAAAGCCGGCTGTGTCCGGTAATTTTG
TATGTGGAGCAACTGGAGTGGGAATACCTTGAAGATTTCAAAAAAGGCCCTACTTTAAGCCTATTGGTAAAGCCGGTAAC
GGCGTTAAGCTTAATGGGAGCAATTTATACCGCTTTGACCAACTTTAACACTTATTTAGACCTGGTTGCCCAGAAAGAAG
AGATGGAAAAACGTTTAGAGGAAAGGCGGTTAATTGATCGGGCAAAAGCGCTACTGATTCGCTGGGAAAATTTGACGGAA
GATGAGGCTTACCGTTATCTTCGGGAGGAAAGCCGCAGGCAGAATATTTCCATGGGCAAGGTGGCCAAAAAGATTATTGA
AAAGTATACATAA

Upstream 100 bases:

>100_bases
CCTTACGGCAAATTGTATACTTACTAACCGCAATGCATAACTGCTTGCGGTTTTTACTTTTTTTATTATAAGATATTGAA
AAAAAGCTGAGGGATTTGTT

Downstream 100 bases:

>100_bases
TTCAATTTGAGAAAATATTGTAATTGAGTAAGATATTTTGTAAAATAAGTGGCGAGTTTAGGTTAAAAAAGCCATAGTTT
GGGGCGATGAAGTCCCGCAA

Product: response regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MENLKVVLGIRDYTERKRFKEILRTMGVLIVGEGEEIRALINLSSRVCPDLVILDEKLGTTKTLPYTKIFYESRLCPVIL
YVEQLEWEYLEDFKKGPTLSLLVKPVTALSLMGAIYTALTNFNTYLDLVAQKEEMEKRLEERRLIDRAKALLIRWENLTE
DEAYRYLREESRRQNISMGKVAKKIIEKYT

Sequences:

>Translated_190_residues
MENLKVVLGIRDYTERKRFKEILRTMGVLIVGEGEEIRALINLSSRVCPDLVILDEKLGTTKTLPYTKIFYESRLCPVIL
YVEQLEWEYLEDFKKGPTLSLLVKPVTALSLMGAIYTALTNFNTYLDLVAQKEEMEKRLEERRLIDRAKALLIRWENLTE
DEAYRYLREESRRQNISMGKVAKKIIEKYT
>Mature_190_residues
MENLKVVLGIRDYTERKRFKEILRTMGVLIVGEGEEIRALINLSSRVCPDLVILDEKLGTTKTLPYTKIFYESRLCPVIL
YVEQLEWEYLEDFKKGPTLSLLVKPVTALSLMGAIYTALTNFNTYLDLVAQKEEMEKRLEERRLIDRAKALLIRWENLTE
DEAYRYLREESRRQNISMGKVAKKIIEKYT

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22315; Mature: 22315

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENLKVVLGIRDYTERKRFKEILRTMGVLIVGEGEEIRALINLSSRVCPDLVILDEKLGT
CCCCEEEEECHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCC
TKTLPYTKIFYESRLCPVILYVEQLEWEYLEDFKKGPTLSLLVKPVTALSLMGAIYTALT
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
NFNTYLDLVAQKEEMEKRLEERRLIDRAKALLIRWENLTEDEAYRYLREESRRQNISMGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH
VAKKIIEKYT
HHHHHHHHCC
>Mature Secondary Structure
MENLKVVLGIRDYTERKRFKEILRTMGVLIVGEGEEIRALINLSSRVCPDLVILDEKLGT
CCCCEEEEECHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCC
TKTLPYTKIFYESRLCPVILYVEQLEWEYLEDFKKGPTLSLLVKPVTALSLMGAIYTALT
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
NFNTYLDLVAQKEEMEKRLEERRLIDRAKALLIRWENLTEDEAYRYLREESRRQNISMGK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHH
VAKKIIEKYT
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]