| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is nfdA [H]
Identifier: 77761179
GI number: 77761179
Start: 2345452
End: 2347410
Strand: Direct
Name: nfdA [H]
Synonym: XC_1943
Alternate gene names: 77761179
Gene position: 2345452-2347410 (Clockwise)
Preceding gene: 66768263
Following gene: 66768265
Centisome position: 45.55
GC content: 65.03
Gene sequence:
>1959_bases ATGAGCACGCCCACTGATTCCCACGATGCCGGCCGGCGCCAGCTGTTGCAGGGTGCCGCCGCCGGCCTTGCACTGGGCAT TGCGCCTGCTGCGTTGACTGCCAACAGGACGCCTCCGATGGTCGATCTCATTCTCCGTAATGCACGTATCACCACGCTTG ACCCGCGCCAACCCAGCGCCACTACGCTGGCGGTGGCCGATGGCCGCATCGTGGCAGTGGGTGACGATGCGCAGATCATG GCCATGGCCAAGCAGGCGCGTGTCATCGATGCACAGCAGCGACGCGTGGTGCCCGGGCTCAACGACAGCCACACGCATCT CATTCGCGGCGGTTTGAACTACAACCTGGAGTTGCGCTGGGACGGCGTGCGCTCGCTGGCCGACGCCATGGCATTGCTCA AGGCGCAGGTCGACCGGACGCCGGCGCCGCAGTGGGTGCGCGTGGTCGGCGGTTTCACCGCGCATCAGTTCATTGAAAAG CGCCTGCCAACCCTGGACGAGATCAACGCGATCGCGCCGGATACACCGGTGTTCCTGCTGCATCTCTACGACCGCGCCTT GCTCAATCGCGCGGCGTTGCGTGCATGTGGTTACGACAAGACCACGCCGGATCCGCCAGGTGGCCGCATCGAGCGCGACA AGCTCGGCAATCCCACCGGCCTGCTGCTGGCCAAGCCGAATGCGTTGATCCTGTATGCCAGCCTGGCGAAAGGGCCGCGG CTGCCGATCGAATACCAGGCCAACTCCACGCGCCATTTCATGCGCGAGCTCAACCGCCTGGGCATCACCTCGGTCATCGA CGCCGGTGGCGGGTTCCAGAACTATCCGGAGGACTATCAGGTCATCGAGCAGTTGCATGCGGCCGGGCAGTTGAGCGTGC GCATCGCCTACAACCTGTTTACCCAGAACAAGGGCAAGGAAGTCGCCGATTTCCGCGGCTGGACCGAGGTGTTGCCGGTC CGCAAGGGCGACGATCTGCTGCGCCACAACGGTGCCGGCGAAATGCTGGTGTTCTCGGCGGCCGATTTCGAGCAGTTCAG TGAGCCGCGCCCGGAGCTTGCGCCGGAGATGGAACCGGAACTGGAGCAGGTGGTGCGCCTGCTGGTGGAAAAACGCTGGC CGTTCCGCATCCACGCTACCTACGACGAAAGCATCTCGCGCATTCTCGATGTCTACGAACGCGTCAACGCGGACATGCCG TTCGATGGCCTGCACTGGTTCATCGATCACGCCGAAACCATCACGCCGCGCAACATCGATCGCATCCGCGCGTTGAACGG CGGCATCGCGGTGCAGCACCGCATGGCCTATCAAGGCGAAGCCTTCGTGCAGCGCTACGGCGTGCAAGCCGCACGCCATA CGCCGCCAGTGCGGCGCATGTTGGCGGCCGGTGTGCCGGTGGGCGCGGGCACCGATGCCACGCGCGTGGCCAGCTACAAC CCGTGGGTGGCGCTGTCGTGGCTGGTCACCGGCCGTACTGTCGGAGGGCTGGCGCTGTATGGCGACGAGAATCTGCTCGA GCGCGAGCAGGCCTTGCGCTTGTGGACGCAGGGCAGTGCCTGGTTTTCCGGTGATGAAGACAAGAAGGGCACTTTGGCGC CTGGTCAGTTGGCCGATTTCATCGTCTTGTCGGATGACTATTTCCGCGTCGACGATGCCGCCATCGCCGATATCACCAGC GTGCTGACCGTGTTGGGCGGTACCGTGGTGCACGGTGACGGCGACTTCGCTGCACTGGCGCCCAGCCTGCCGCCGGCAAT GCCGGAATGGTCGCCGGTCAACCGTTTTGGTGGCTATCACGTGGGCGGTGCGGTGAGCGGGCTGGCCAGCGTGGCGCATG CGCATGGCCCTGGCTGCCGCACCCACGGCACACATGGGCATGCCGCGCACCACGCCGCACCCAGCGACGATCTGCGCGGC TTCTGGGGGGCATTGGGATGCGCATGTTTCGCGTTTTAA
Upstream 100 bases:
>100_bases GCATGGAATACCCGCTGATGTGGGCGCTGGTCTTGCTGGCGCTGGTATGCGCCGGCGGTGGCGCGTGGTCGCTGGACGGC CTGCGTCGGCGGCACGTGTC
Downstream 100 bases:
>100_bases GGCCGCAGCAGCGCCTGGCTGCGGCGAGAGGTCAGCGCATCGTTGCAGCACAGGTCTGCAACCTTAAGAAGGCGTGTGCA GTGTCCGTCGCGGGCGCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 652; Mature: 651
Protein sequence:
>652_residues MSTPTDSHDAGRRQLLQGAAAGLALGIAPAALTANRTPPMVDLILRNARITTLDPRQPSATTLAVADGRIVAVGDDAQIM AMAKQARVIDAQQRRVVPGLNDSHTHLIRGGLNYNLELRWDGVRSLADAMALLKAQVDRTPAPQWVRVVGGFTAHQFIEK RLPTLDEINAIAPDTPVFLLHLYDRALLNRAALRACGYDKTTPDPPGGRIERDKLGNPTGLLLAKPNALILYASLAKGPR LPIEYQANSTRHFMRELNRLGITSVIDAGGGFQNYPEDYQVIEQLHAAGQLSVRIAYNLFTQNKGKEVADFRGWTEVLPV RKGDDLLRHNGAGEMLVFSAADFEQFSEPRPELAPEMEPELEQVVRLLVEKRWPFRIHATYDESISRILDVYERVNADMP FDGLHWFIDHAETITPRNIDRIRALNGGIAVQHRMAYQGEAFVQRYGVQAARHTPPVRRMLAAGVPVGAGTDATRVASYN PWVALSWLVTGRTVGGLALYGDENLLEREQALRLWTQGSAWFSGDEDKKGTLAPGQLADFIVLSDDYFRVDDAAIADITS VLTVLGGTVVHGDGDFAALAPSLPPAMPEWSPVNRFGGYHVGGAVSGLASVAHAHGPGCRTHGTHGHAAHHAAPSDDLRG FWGALGCACFAF
Sequences:
>Translated_652_residues MSTPTDSHDAGRRQLLQGAAAGLALGIAPAALTANRTPPMVDLILRNARITTLDPRQPSATTLAVADGRIVAVGDDAQIM AMAKQARVIDAQQRRVVPGLNDSHTHLIRGGLNYNLELRWDGVRSLADAMALLKAQVDRTPAPQWVRVVGGFTAHQFIEK RLPTLDEINAIAPDTPVFLLHLYDRALLNRAALRACGYDKTTPDPPGGRIERDKLGNPTGLLLAKPNALILYASLAKGPR LPIEYQANSTRHFMRELNRLGITSVIDAGGGFQNYPEDYQVIEQLHAAGQLSVRIAYNLFTQNKGKEVADFRGWTEVLPV RKGDDLLRHNGAGEMLVFSAADFEQFSEPRPELAPEMEPELEQVVRLLVEKRWPFRIHATYDESISRILDVYERVNADMP FDGLHWFIDHAETITPRNIDRIRALNGGIAVQHRMAYQGEAFVQRYGVQAARHTPPVRRMLAAGVPVGAGTDATRVASYN PWVALSWLVTGRTVGGLALYGDENLLEREQALRLWTQGSAWFSGDEDKKGTLAPGQLADFIVLSDDYFRVDDAAIADITS VLTVLGGTVVHGDGDFAALAPSLPPAMPEWSPVNRFGGYHVGGAVSGLASVAHAHGPGCRTHGTHGHAAHHAAPSDDLRG FWGALGCACFAF >Mature_651_residues STPTDSHDAGRRQLLQGAAAGLALGIAPAALTANRTPPMVDLILRNARITTLDPRQPSATTLAVADGRIVAVGDDAQIMA MAKQARVIDAQQRRVVPGLNDSHTHLIRGGLNYNLELRWDGVRSLADAMALLKAQVDRTPAPQWVRVVGGFTAHQFIEKR LPTLDEINAIAPDTPVFLLHLYDRALLNRAALRACGYDKTTPDPPGGRIERDKLGNPTGLLLAKPNALILYASLAKGPRL PIEYQANSTRHFMRELNRLGITSVIDAGGGFQNYPEDYQVIEQLHAAGQLSVRIAYNLFTQNKGKEVADFRGWTEVLPVR KGDDLLRHNGAGEMLVFSAADFEQFSEPRPELAPEMEPELEQVVRLLVEKRWPFRIHATYDESISRILDVYERVNADMPF DGLHWFIDHAETITPRNIDRIRALNGGIAVQHRMAYQGEAFVQRYGVQAARHTPPVRRMLAAGVPVGAGTDATRVASYNP WVALSWLVTGRTVGGLALYGDENLLEREQALRLWTQGSAWFSGDEDKKGTLAPGQLADFIVLSDDYFRVDDAAIADITSV LTVLGGTVVHGDGDFAALAPSLPPAMPEWSPVNRFGGYHVGGAVSGLASVAHAHGPGCRTHGTHGHAAHHAAPSDDLRGF WGALGCACFAF
Specific function: Hydrolyzes N-substituted formamides, but not amides. N- benzylformamide is the preferred substrate, while N-butylformamide is hydrolyzed at a much lower rate. Has very low activity towards allylformamide, N-(2-cyclohex-1-enylethyl)formamide and N-(alpha-
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: =3.5.1.91 [H]
Molecular weight: Translated: 70990; Mature: 70859
Theoretical pI: Translated: 6.75; Mature: 6.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPTDSHDAGRRQLLQGAAAGLALGIAPAALTANRTPPMVDLILRNARITTLDPRQPSA CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHCCCEEEEECCCCCCC TTLAVADGRIVAVGDDAQIMAMAKQARVIDAQQRRVVPGLNDSHTHLIRGGLNYNLELRW CEEEEECCEEEEECCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCCEEEECCCCEEEEEEE DGVRSLADAMALLKAQVDRTPAPQWVRVVGGFTAHQFIEKRLPTLDEINAIAPDTPVFLL CHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCCHHHHCCCCCCCCCHHH HLYDRALLNRAALRACGYDKTTPDPPGGRIERDKLGNPTGLLLAKPNALILYASLAKGPR HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHCCCCCEEEEECCCEEEEEEECCCCCC LPIEYQANSTRHFMRELNRLGITSVIDAGGGFQNYPEDYQVIEQLHAAGQLSVRIAYNLF CCEEECCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEE TQNKGKEVADFRGWTEVLPVRKGDDLLRHNGAGEMLVFSAADFEQFSEPRPELAPEMEPE ECCCCCCHHHHCCHHHHCCCCCCCHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCCCHH LEQVVRLLVEKRWPFRIHATYDESISRILDVYERVNADMPFDGLHWFIDHAETITPRNID HHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHH RIRALNGGIAVQHRMAYQGEAFVQRYGVQAARHTPPVRRMLAAGVPVGAGTDATRVASYN HHHHCCCCEEEEEHHHHCHHHHHHHHCCHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCC PWVALSWLVTGRTVGGLALYGDENLLEREQALRLWTQGSAWFSGDEDKKGTLAPGQLADF CCEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE IVLSDDYFRVDDAAIADITSVLTVLGGTVVHGDGDFAALAPSLPPAMPEWSPVNRFGGYH EEECCCCEECCCHHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCCCCCCCHHHCCCEE VGGAVSGLASVAHAHGPGCRTHGTHGHAAHHAAPSDDLRGFWGALGCACFAF CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure STPTDSHDAGRRQLLQGAAAGLALGIAPAALTANRTPPMVDLILRNARITTLDPRQPSA CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHCCCEEEEECCCCCCC TTLAVADGRIVAVGDDAQIMAMAKQARVIDAQQRRVVPGLNDSHTHLIRGGLNYNLELRW CEEEEECCEEEEECCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCCEEEECCCCEEEEEEE DGVRSLADAMALLKAQVDRTPAPQWVRVVGGFTAHQFIEKRLPTLDEINAIAPDTPVFLL CHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCCHHHHCCCCCCCCCHHH HLYDRALLNRAALRACGYDKTTPDPPGGRIERDKLGNPTGLLLAKPNALILYASLAKGPR HHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEHHHCCCCCEEEEECCCEEEEEEECCCCCC LPIEYQANSTRHFMRELNRLGITSVIDAGGGFQNYPEDYQVIEQLHAAGQLSVRIAYNLF CCEEECCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEEE TQNKGKEVADFRGWTEVLPVRKGDDLLRHNGAGEMLVFSAADFEQFSEPRPELAPEMEPE ECCCCCCHHHHCCHHHHCCCCCCCHHHHCCCCCCEEEEECCCHHHHCCCCCCCCCCCCHH LEQVVRLLVEKRWPFRIHATYDESISRILDVYERVNADMPFDGLHWFIDHAETITPRNID HHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCHH RIRALNGGIAVQHRMAYQGEAFVQRYGVQAARHTPPVRRMLAAGVPVGAGTDATRVASYN HHHHCCCCEEEEEHHHHCHHHHHHHHCCHHHHCCCHHHHHHHCCCCCCCCCCCCEEECCC PWVALSWLVTGRTVGGLALYGDENLLEREQALRLWTQGSAWFSGDEDKKGTLAPGQLADF CCEEEEEEEECCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE IVLSDDYFRVDDAAIADITSVLTVLGGTVVHGDGDFAALAPSLPPAMPEWSPVNRFGGYH EEECCCCEECCCHHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCCCCCCCHHHCCCEE VGGAVSGLASVAHAHGPGCRTHGTHGHAAHHAAPSDDLRGFWGALGCACFAF CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA