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The map label for this gene is yciR [C]

Identifier: 77761155

GI number: 77761155

Start: 1900852

End: 1903215

Strand: Direct

Name: yciR [C]

Synonym: XC_1582

Alternate gene names: 77761155

Gene position: 1900852-1903215 (Clockwise)

Preceding gene: 66767905

Following gene: 66767907

Centisome position: 36.92

GC content: 65.95

Gene sequence:

>2364_bases
ATGAAGGCGATGCGACTGCATACGCGCATCGCGGCGCTGCTGGTGCTGGTGGTGCTCGGCACCCAGGCGCTGACCTTCAT
TGCCGTGCAGGTGGCCACCGAGCGCAGCGTCAAGGCGCAACTCGGCGAAGAGCTGCTGATTGGCGAGCGGGTCTGGCAAC
GCATCAACCAGCGCCGCGATGAACAACTGCTGCAATCGGCCTCGGTGCTGGCGGACGATTTCGGCTTCCGTGCAGCCGTT
GCCAGCGGCGATGTGCCAACGATGCAGTCGGCGTTGCGCAACCACGCCGCGCGCATGGATGCGCAGACGGCGGTGCTGCT
GTCGCCTGAAGGCGATTTTCTGACCGGGCTGGCGGATCTGCCGCAGGCCGAGCAGCTGCGTGCCGTGCAGGCCTTGCTGC
AACAGGCCCAGCACGACGGGCGTGCCGTCGGTGTGGTGGCCTTGGATCAACACATCGTGCGCCTGGCAGTCGTGCAGGTA
CTGGCGCCGAGCCGGGTGGGCTGGATTGCGATCGGTAATGAATCCGGCGACAGCCTTGCGCAGGATTTCCGCAGCACCAC
GGGTCTGGATGCCACCTTCTTCATCGACGGTGCGCCGCCGCGCGTACTGGCGTCCACGCTGCAACCAGCCGAACGCACGG
AATTCGCGCAGCAATTGCGCACCGCCGAACACGCGCAGGGCGCTGCAATCCCGCTGACCCTGGGGGACTCGCGTTACCTG
GTGAAGTTGCAGTCCATCCAGGGCGATACCCGCGTGCGGGTTGCCTTGCAGGCGTCGTTGGACCGCGCGGTGGCGCCGTA
CCGCACACTCAAGTTACGGATTTTGCTGCTGGCTGGCCTGGCCACCGCCGCCGCACTGGGCGTGTCGATTTTTCTCGCGC
GCAGCGTCAGTAAGCCGGTGGCGCTGCTGGTGCAGGCAGCACGCCGCATCCAGCGCGGTGATTACCACACCACCGTGCAA
TTGCCGCCCGGGCGCGAATTGGCGGAGCTGGCCGACAGCTTCGGGCGCATGCAGCAGCAGATCGCCACGCGCGAGCAGCA
CATCCTGCACCAGGCACGCCACGACGCACTCACTGGCTTGCCCAACCGCATCTGGCTGCTGGAGCAGCTGCAGCAGGTGG
TGGATCAGACCGTGGCCTCGGGCGGCACCGCAGCGGTGTTGATCCTGGACCTGGAGCGCTTCAAGGAACTCAACGACAGC
CTGGGCCACGACTTCGCAGATCAGGTCTTGGTCGAAGCCGGGCGCAGGCTTGCCGACGTGGTGCAGGCGCCCAACATCGT
CGGGCGCCTTGGCAGCGACGAATTCATGGTGGTGGTGGCGCATGCCGACCCGGCCACCGTGCAGGAGGAAGCCCAACGCC
TGCTGCTGCAATTGCGCAGCCCGCTGGCGCTGCCGCAGGCGCGCATCCAGCTCGAAGCCAGCATCGGCATTGCGTTGATT
CCCGAACATGGCGCCGACCCGGACACGCTGCTGCGTCGCGCCGATATCGCGCGCGGCCAGGTCGGCGACACCGCCAGTGG
CGCCAGCGTGTACCGGCTTGGCCAGGACGAGCAGCATCTGCGCCGGCTGCGTCTCACCGGCGATCTGCGCCAGGCCATCG
GTGGCAACGAGCTGACCTTGCGTTTCCAGCCCAAGATCAGCCTGCGTACCGATCAGGTGGAGCAGGTCGAGGTGCTCGTG
CGCTGGCATCACCCGGTGCTGGGGCCGATCGGCCCGGACGAATTCATTCCGTTGGCCGAGCATTCCGGCGTCATCCATCC
GCTCACCCGCTTCGTGCTGGACGAGGCCTTGCACTGCCAGTCGCAATGGCGAGCGCAAGGATTGGAACTGGGCATGGCGA
TCAATCTGTCGGCCCTGGATCTGTCCGACCCCGGCCTGCCGGACTTCGTGCGCGGCTGCCTGCAGCGTCATGCGGTGCCG
GCCACCTCGGTCACGCTGGAACTGACCGAAAGCGCATTGATGCGCGATGTCGAATTTGCGCTGCACATGTTGCATCAACT
CCGCAATGTGGGCGTACGGCTGTCGGTCGACGACTTCGGCACCGGCTATTCCTCGCTGGCCCAGCTCAAGCGCATGCCGG
TGAACGAATTGAAGATCGACAAGAGCTTTGTCATGCAGCTTGCCGAAGGCACCGACGATGCCTTCATCGTGCGCAGCACG
ATCGATCTGGGGCACAACCTCGGCCTGAGCGTGATTGCCGAGGGCGTGGAAAACGACACTGCGCTGGCGCTGCTGCGCGG
CTACGGCTGCGACATGGTGCAGGGCTATCTGTATTCGCCGCCACTGGAAGAAAAGCCGCTGCTGGCATGGTGCATGCGCC
AGCTCGGTCGCTCGCCCGTGGCGCAGGCGGGAGGTCAACGATGA

Upstream 100 bases:

>100_bases
AGACCACCGGCACAGCGCCAGCGGTCGCGCCGCCGGATGATCGCGTGCGCGCGCTGCAGGACAAGTTCCGTCGCGCCGCC
GACCCGAAAAAGCCGTCTCC

Downstream 100 bases:

>100_bases
AGCGCGTTCCACGTACGACAGCGGCCGCAATGCTGCTTGCCGCAACGGCGCTGAACCCACTGCTGTGCATGGCGGGCGAG
GGCCGGTTGCTGGCCACCGG

Product: phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 787; Mature: 787

Protein sequence:

>787_residues
MKAMRLHTRIAALLVLVVLGTQALTFIAVQVATERSVKAQLGEELLIGERVWQRINQRRDEQLLQSASVLADDFGFRAAV
ASGDVPTMQSALRNHAARMDAQTAVLLSPEGDFLTGLADLPQAEQLRAVQALLQQAQHDGRAVGVVALDQHIVRLAVVQV
LAPSRVGWIAIGNESGDSLAQDFRSTTGLDATFFIDGAPPRVLASTLQPAERTEFAQQLRTAEHAQGAAIPLTLGDSRYL
VKLQSIQGDTRVRVALQASLDRAVAPYRTLKLRILLLAGLATAAALGVSIFLARSVSKPVALLVQAARRIQRGDYHTTVQ
LPPGRELAELADSFGRMQQQIATREQHILHQARHDALTGLPNRIWLLEQLQQVVDQTVASGGTAAVLILDLERFKELNDS
LGHDFADQVLVEAGRRLADVVQAPNIVGRLGSDEFMVVVAHADPATVQEEAQRLLLQLRSPLALPQARIQLEASIGIALI
PEHGADPDTLLRRADIARGQVGDTASGASVYRLGQDEQHLRRLRLTGDLRQAIGGNELTLRFQPKISLRTDQVEQVEVLV
RWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDEALHCQSQWRAQGLELGMAINLSALDLSDPGLPDFVRGCLQRHAVP
ATSVTLELTESALMRDVEFALHMLHQLRNVGVRLSVDDFGTGYSSLAQLKRMPVNELKIDKSFVMQLAEGTDDAFIVRST
IDLGHNLGLSVIAEGVENDTALALLRGYGCDMVQGYLYSPPLEEKPLLAWCMRQLGRSPVAQAGGQR

Sequences:

>Translated_787_residues
MKAMRLHTRIAALLVLVVLGTQALTFIAVQVATERSVKAQLGEELLIGERVWQRINQRRDEQLLQSASVLADDFGFRAAV
ASGDVPTMQSALRNHAARMDAQTAVLLSPEGDFLTGLADLPQAEQLRAVQALLQQAQHDGRAVGVVALDQHIVRLAVVQV
LAPSRVGWIAIGNESGDSLAQDFRSTTGLDATFFIDGAPPRVLASTLQPAERTEFAQQLRTAEHAQGAAIPLTLGDSRYL
VKLQSIQGDTRVRVALQASLDRAVAPYRTLKLRILLLAGLATAAALGVSIFLARSVSKPVALLVQAARRIQRGDYHTTVQ
LPPGRELAELADSFGRMQQQIATREQHILHQARHDALTGLPNRIWLLEQLQQVVDQTVASGGTAAVLILDLERFKELNDS
LGHDFADQVLVEAGRRLADVVQAPNIVGRLGSDEFMVVVAHADPATVQEEAQRLLLQLRSPLALPQARIQLEASIGIALI
PEHGADPDTLLRRADIARGQVGDTASGASVYRLGQDEQHLRRLRLTGDLRQAIGGNELTLRFQPKISLRTDQVEQVEVLV
RWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDEALHCQSQWRAQGLELGMAINLSALDLSDPGLPDFVRGCLQRHAVP
ATSVTLELTESALMRDVEFALHMLHQLRNVGVRLSVDDFGTGYSSLAQLKRMPVNELKIDKSFVMQLAEGTDDAFIVRST
IDLGHNLGLSVIAEGVENDTALALLRGYGCDMVQGYLYSPPLEEKPLLAWCMRQLGRSPVAQAGGQR
>Mature_787_residues
MKAMRLHTRIAALLVLVVLGTQALTFIAVQVATERSVKAQLGEELLIGERVWQRINQRRDEQLLQSASVLADDFGFRAAV
ASGDVPTMQSALRNHAARMDAQTAVLLSPEGDFLTGLADLPQAEQLRAVQALLQQAQHDGRAVGVVALDQHIVRLAVVQV
LAPSRVGWIAIGNESGDSLAQDFRSTTGLDATFFIDGAPPRVLASTLQPAERTEFAQQLRTAEHAQGAAIPLTLGDSRYL
VKLQSIQGDTRVRVALQASLDRAVAPYRTLKLRILLLAGLATAAALGVSIFLARSVSKPVALLVQAARRIQRGDYHTTVQ
LPPGRELAELADSFGRMQQQIATREQHILHQARHDALTGLPNRIWLLEQLQQVVDQTVASGGTAAVLILDLERFKELNDS
LGHDFADQVLVEAGRRLADVVQAPNIVGRLGSDEFMVVVAHADPATVQEEAQRLLLQLRSPLALPQARIQLEASIGIALI
PEHGADPDTLLRRADIARGQVGDTASGASVYRLGQDEQHLRRLRLTGDLRQAIGGNELTLRFQPKISLRTDQVEQVEVLV
RWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDEALHCQSQWRAQGLELGMAINLSALDLSDPGLPDFVRGCLQRHAVP
ATSVTLELTESALMRDVEFALHMLHQLRNVGVRLSVDDFGTGYSSLAQLKRMPVNELKIDKSFVMQLAEGTDDAFIVRST
IDLGHNLGLSVIAEGVENDTALALLRGYGCDMVQGYLYSPPLEEKPLLAWCMRQLGRSPVAQAGGQR

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=430, Percent_Identity=34.4186046511628, Blast_Score=264, Evalue=1e-71,
Organism=Escherichia coli, GI87081921, Length=427, Percent_Identity=33.0210772833724, Blast_Score=233, Evalue=3e-62,
Organism=Escherichia coli, GI226510982, Length=444, Percent_Identity=28.6036036036036, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=34.412955465587, Blast_Score=143, Evalue=4e-35,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=31.5789473684211, Blast_Score=132, Evalue=8e-32,
Organism=Escherichia coli, GI1786507, Length=277, Percent_Identity=32.129963898917, Blast_Score=132, Evalue=1e-31,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=32.03125, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787055, Length=480, Percent_Identity=25.2083333333333, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87081845, Length=240, Percent_Identity=34.1666666666667, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1788502, Length=255, Percent_Identity=29.4117647058824, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=31.6666666666667, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI87082096, Length=245, Percent_Identity=31.4285714285714, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=33.1168831168831, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI1788381, Length=412, Percent_Identity=24.0291262135922, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1786584, Length=172, Percent_Identity=28.4883720930233, Blast_Score=73, Evalue=8e-14,
Organism=Escherichia coli, GI145693134, Length=150, Percent_Identity=31.3333333333333, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=31.4814814814815, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI87082007, Length=151, Percent_Identity=30.4635761589404, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=26.9461077844311, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI87081881, Length=155, Percent_Identity=31.6129032258064, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 85786; Mature: 85786

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAMRLHTRIAALLVLVVLGTQALTFIAVQVATERSVKAQLGEELLIGERVWQRINQRRD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQLLQSASVLADDFGFRAAVASGDVPTMQSALRNHAARMDAQTAVLLSPEGDFLTGLADL
HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCHHCC
PQAEQLRAVQALLQQAQHDGRAVGVVALDQHIVRLAVVQVLAPSRVGWIAIGNESGDSLA
CCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
QDFRSTTGLDATFFIDGAPPRVLASTLQPAERTEFAQQLRTAEHAQGAAIPLTLGDSRYL
HHHHHHCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEE
VKLQSIQGDTRVRVALQASLDRAVAPYRTLKLRILLLAGLATAAALGVSIFLARSVSKPV
EEEECCCCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ALLVQAARRIQRGDYHTTVQLPPGRELAELADSFGRMQQQIATREQHILHQARHDALTGL
HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PNRIWLLEQLQQVVDQTVASGGTAAVLILDLERFKELNDSLGHDFADQVLVEAGRRLADV
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VQAPNIVGRLGSDEFMVVVAHADPATVQEEAQRLLLQLRSPLALPQARIQLEASIGIALI
HHCCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCEEEE
PEHGADPDTLLRRADIARGQVGDTASGASVYRLGQDEQHLRRLRLTGDLRQAIGGNELTL
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE
RFQPKISLRTDQVEQVEVLVRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDEALHCQ
EECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHH
SQWRAQGLELGMAINLSALDLSDPGLPDFVRGCLQRHAVPATSVTLELTESALMRDVEFA
HHHHHCCCEECEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHH
LHMLHQLRNVGVRLSVDDFGTGYSSLAQLKRMPVNELKIDKSFVMQLAEGTDDAFIVRST
HHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHCCCCCEEEEEEE
IDLGHNLGLSVIAEGVENDTALALLRGYGCDMVQGYLYSPPLEEKPLLAWCMRQLGRSPV
HHCCCCCCHHHHHHCCCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
AQAGGQR
HHCCCCC
>Mature Secondary Structure
MKAMRLHTRIAALLVLVVLGTQALTFIAVQVATERSVKAQLGEELLIGERVWQRINQRRD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQLLQSASVLADDFGFRAAVASGDVPTMQSALRNHAARMDAQTAVLLSPEGDFLTGLADL
HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHCHHCC
PQAEQLRAVQALLQQAQHDGRAVGVVALDQHIVRLAVVQVLAPSRVGWIAIGNESGDSLA
CCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
QDFRSTTGLDATFFIDGAPPRVLASTLQPAERTEFAQQLRTAEHAQGAAIPLTLGDSRYL
HHHHHHCCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCEEE
VKLQSIQGDTRVRVALQASLDRAVAPYRTLKLRILLLAGLATAAALGVSIFLARSVSKPV
EEEECCCCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ALLVQAARRIQRGDYHTTVQLPPGRELAELADSFGRMQQQIATREQHILHQARHDALTGL
HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PNRIWLLEQLQQVVDQTVASGGTAAVLILDLERFKELNDSLGHDFADQVLVEAGRRLADV
CHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
VQAPNIVGRLGSDEFMVVVAHADPATVQEEAQRLLLQLRSPLALPQARIQLEASIGIALI
HHCCHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHEEEEECCCEEEE
PEHGADPDTLLRRADIARGQVGDTASGASVYRLGQDEQHLRRLRLTGDLRQAIGGNELTL
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE
RFQPKISLRTDQVEQVEVLVRWHHPVLGPIGPDEFIPLAEHSGVIHPLTRFVLDEALHCQ
EECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHH
SQWRAQGLELGMAINLSALDLSDPGLPDFVRGCLQRHAVPATSVTLELTESALMRDVEFA
HHHHHCCCEECEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHH
LHMLHQLRNVGVRLSVDDFGTGYSSLAQLKRMPVNELKIDKSFVMQLAEGTDDAFIVRST
HHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHCCCCCEEEEEEE
IDLGHNLGLSVIAEGVENDTALALLRGYGCDMVQGYLYSPPLEEKPLLAWCMRQLGRSPV
HHCCCCCCHHHHHHCCCCCHHHHHHHHCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCH
AQAGGQR
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]